List of works by Jüri Reimand

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins

scientific article published on 8 November 2017

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

scientific article published on 05 February 2020

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

Comprehensive identification of mutational cancer driver genes across 12 tumor types

scientific article

Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets

scientific article

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development

scientific article

Computational approaches to identify functional genetic variants in cancer genomes

scientific article published on August 2013

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

Disruption of Abi1/Hssh3bp1 expression induces prostatic intraepithelial neoplasia in the conditional Abi1/Hssh3bp1 KO mice

scientific article

Divergent clonal selection dominates medulloblastoma at recurrence

scientific article published on 13 January 2016

Domain-mediated protein interaction prediction: From genome to network

scientific article published on 3 May 2012

EAG2 potassium channel with evolutionarily conserved function as a brain tumor target

scientific article

EP-03MOLECULAR CLASSIFICATION OF EPENDYMAL TUMORS ACROSS ALL CNS COMPARTMENTS, HISTOPATHOLOGICAL GRADES AND AGE GROUPS.

scientific article published on 21 April 2015

Evolutionary constraint and disease associations of post-translational modification sites in human genomes

scientific article

Frequent mutations in acetylation and ubiquitination sites suggest novel driver mechanisms of cancer

scientific article published on 12 May 2016

Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

scientific article

Functional and genetic determinants of mutation rate variability in regulatory elements of cancer genomes

scientific article published on 03 May 2021

Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition

scientific article

Global phosphoproteomic analysis identifies SRMS-regulated secondary signaling intermediates

scholarly article by Raghuveera Kumar Goel published in January 2018

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance

scientific article published on 06 May 2008

Human phospho-signaling networks of SARS-CoV-2 infection are rewired by population genetic variants

scientific article published on 01 May 2022

HyperModules: identifying clinically and phenotypically significant network modules with disease mutations for biomarker discovery

scientific article published on 8 April 2014

Impact of outdated gene annotations on pathway enrichment analysis

scientific article

Integrative pathway enrichment analysis of multivariate omics data

scientific article published on 05 February 2020

Intertumoral Heterogeneity within Medulloblastoma Subgroups

scientific article published on June 2017

KEGGanim: pathway animations for high-throughput data

scientific article

MIMP: predicting the impact of mutations on kinase-substrate phosphorylation.

scientific article published on 4 May 2015

Mid-gestational gene expression profile in placenta and link to pregnancy complications

scientific article

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

scientific article published on 4 December 2009

Molecular Classification of Ependymal Tumors across All CNS Compartments, Histopathological Grades, and Age Groups

scientific article

New Brain Tumor Entities Emerge from Molecular Classification of CNS-PNETs

scientific article

Notch1 regulates the initiation of metastasis and self-renewal of Group 3 medulloblastoma

scientific article published in Nature Communications

Pathogenic Germline Variants in 10,389 Adult Cancers.

scientific article published in April 2018

Pathway and network analysis of cancer genomes

scientific article (publication date: July 2015)

Pathway and network analysis of more than 2,500 whole cancer genomes

Pathway and network analysis of more than 2500 whole cancer genomes

scientific article published on 05 February 2020

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

scientific article published on 01 February 2019

Phosphoproteomics analysis identifies novel candidate substrates of the non-receptor tyrosine kinase, SRMS ⬇️

scientific article published in March 2018

Ranking genes by their co-expression to subsets of pathway members.

scientific article published in March 2009

Relicensing of transcriptionally inactivated replication origins in budding yeast

scientific article published on 20 October 2010

Research resource: interactome of human embryo implantation: identification of gene expression pathways, regulation, and integrated regulatory networks

scientific article

Single allele loss-of-function mutations select and sculpt conditional cooperative networks in breast cancer

scientific article published on 02 September 2021

Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity

scientific article

Spatial heterogeneity in medulloblastoma

scientific article published on 10 April 2017

SubID, a non-median dichotomization tool for heterogeneous populations, reveals the pan-cancer significance of INPP4B and its regulation by EVI1 in AML.

scientific article published on 7 February 2018

Subgroup-specific structural variation across 1,000 medulloblastoma genomes

scientific article

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

scientific article

Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers

scientific article

Systematic analysis of somatic mutations in phosphorylation signaling predicts novelcancer drivers.

scientific article published on 28 August 2014

The FunGenES database: a genomics resource for mouse embryonic stem cell differentiation

scientific article

The mutational landscape of phosphorylation signaling in cancer

scientific article published on 02 October 2013

The transcriptional landscape of Shh medulloblastoma

scientific article published on 19 March 2021

Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling

scientific article published on 20 December 2017

Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders

scientific article published on 31 August 2016

VisHiC--hierarchical functional enrichment analysis of microarray data

scientific article

g:Profiler--a web server for functional interpretation of gene lists (2011 update).

scientific article

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments

scientific article published on 03 May 2007

g:Profiler-a web server for functional interpretation of gene lists (2016 update)

scientific article

m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence

scientific article

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