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List of works by Chaitanya Joshi

A genome-wide approach to screen for genetic variants in broilers (Gallus gallus) with divergent feed conversion ratio

scientific article

A modified enrichment protocol for adult caprine skeletal muscle stem cell.

scientific article

Acephate immunotoxicity in White Leghorn cockerel chicks upon experimental exposure.

scientific article published on 13 April 2012

Alteration in the expression of exon IIC transcripts of brain-derived neurotrophic factor gene by simvastatin [correction of simvastain] in chronic mild stress in mice: a possible link with dopaminergic pathway

scientific article published on 16 October 2014

Analysis of consequences of non-synonymous SNP in feed conversion ratio associated TGF-β receptor type 3 gene in chicken.

scientific article

Antibiotic Resistome Biomarkers associated to the Pelagic Sediments of the Gulfs of Kathiawar Peninsula and Arabian Sea

scientific article published on 21 November 2019

Assembly and variation analyses of Clarias batrachus mitogenome retrieved from WGS data and its phylogenetic relationship with other catfishes

scientific article

Assessment of goat activin receptor type IIB knockdown by short hairpin RNAs in vitro.

scientific article

Association of HLA-B*1502 allele and carbamazepine-induced Stevens-Johnson syndrome among Indians

scientific article published in November 2009

Bacterial diversity associated with feeding dry forage at different dietary concentrations in the rumen contents of Mehshana buffalo (Bubalus bubalis) using 16S pyrotags.

scientific article

Bacterial diversity dynamics associated with different diets and different primer pairs in the rumen of Kankrej cattle

scientific article

Bacterial diversity in the rumen of Indian Surti buffalo (Bubalus bubalis), assessed by 16S rDNA analysis

scientific article

Characterization of the rumen microbiome of Indian Kankrej cattle (Bos indicus) adapted to different forage diet.

scientific article

Comparative analysis of SNP candidates in disparate milk yielding river buffaloes using targeted sequencing

scientific article published on 7 July 2016

Comparative evaluation of phenobarbital-induced CYP3A and CYP2H1 gene expression by quantitative RT-PCR in Bantam, Bantamized White Leghorn and White Leghorn chicks.

scientific article

Comparative evaluation of rumen metagenome community using qPCR and MG-RAST.

scientific article published on 11 September 2013

Comparative genome-scale analysis of niche-based stress-responsive genes in Lactobacillus helveticus strains

article

Complete Genome Sequence of Escherichia Phage ADB-2 Isolated from a Fecal Sample of Poultry.

scientific article

Complete genome sequence analysis of chicken astrovirus isolate from India

scientific article published on 23 December 2016

Complete genome sequence of bluetongue virus serotype 16 of goat origin from India

scientific article

Complete mitochondrial genome of threatened mahseer Tor tor (Hamilton 1822) and its phylogenetic relationship within Cyprinidae family

scientific article

Comprehensive transcriptome profiling of squamous cell carcinoma of horn in Bos indicus

scientific article published on 06 December 2013

Culture independent assessment of human milk microbial community in lactational mastitis

scientific article published on 10 August 2017

Dasytricha dominance in Surti buffalo rumen revealed by 18S rRNA sequences and real-time PCR assay

scientific article published on 10 July 2011

De Novo Assembly and Transcriptome Characterization of Canine Retina Using High-Throughput Sequencing.

scientific article

De novo Transcriptome Sequencing to Dissect Candidate Genes Associated with Pearl Millet-Downy Mildew (Sclerospora graminicola Sacc.) Interaction

scientific article published on 22 June 2016

De novo transcriptome of Gymnema sylvestre identified putative lncRNA and genes regulating terpenoid biosynthesis pathway

scientific article published on 16 October 2019

Deciphering the microbiota of Tuwa hot spring, India using shotgun metagenomic sequencing approach

scientific article published on 20 April 2015

Deep insights into carbohydrate metabolism in the rumen of Mehsani buffalo at different diet treatments

scientific article published on 12 August 2015

Detection of theileriosis in cattle and buffaloes by polymerase chain reaction

scientific article published on 19 November 2013

Detection of virulence determinants by real time PCR in E. coli isolated from mutton

scientific article published on 24 May 2008

Development and characterization of genic SSR markers from low depth genome sequence of Clarias batrachus (magur).

scientific article

Draft Genome Sequence of Achromobacter sp. Strain DMS1, Capable of Degrading Polyaromatic Hydrocarbons Isolated from the Industrially Perturbed Environment of Amlakhadi Canal, India

scientific article published on 22 October 2015

Draft Genome Sequence of Paenibacillus sp. Strain DMB20, Isolated from Alang Ship-Breaking Yard, Which Harbors Genes for Xenobiotic Degradation

scientific article

Draft Genome Sequence of Pasteurella multocida subsp. multocida B:2 Strain VTCCBAA264 Isolated from Bubalus bubalis in North India

scientific article

Draft Genome Sequence of Petroleum Hydrocarbon-Degrading Pseudomonas aeruginosa Strain PK6, Isolated from the Saurashtra Region of Gujarat, India

scientific article published on 6 February 2014

Draft Genome Sequence of Textile Azo Dye-Decolorizing and -Degrading Pseudomonas aeruginosa Strain PFK10, Isolated from the Common Effluent Treatment Plant of the Ankleshwar Industrial Area of Gujarat, India

scientific article published on 6 February 2014

Draft genome analysis of lignocellulolytic enzymes producing Aspergillus terreus with structural insight of β-glucosidases through molecular docking approach

scientific article published on 03 December 2018

Draft genome sequence of a thermostable, alkaliphilic α-amylase and protease producing Bacillus amyloliquefaciens strain KCP2

scientific article published on 13 October 2017

Effect of Cyperus Rotundus on Cytokine Gene Expression in Experimental Inflammatory Bowel Disease

scientific article published on September 2016

Effect of roughage on rumen microbiota composition in the efficient feed converter and sturdy Indian Jaffrabadi buffalo (Bubalus bubalis).

scientific article

Effect of the pH in the enrichment of X or Y sex chromosome-bearing sperm in bovine

scientific article published on 23 August 2019

Emergence of a genotype I variant of avian infectious bronchitis virus from Northern part of India.

scientific article published on 2 April 2018

Evaluation of a topical herbal drug for its in-vivo immunomodulatory effect on cytokines production and antibacterial activity in bovine subclinical mastitis

scientific article

Evaluation of fertility status of Murrah buffalo bulls in vitro using zona-free hamster eggs

scientific article published in August 1997

Evaluation of genetic diversity and population structure of West-Central Indian cattle breeds

scientific article published on 6 December 2012

Evaluation of the effect of Punica granatum juice and punicalagin on NFκB modulation in inflammatory bowel disease.

scientific article published on 28 June 2016

Exploring genetic polymorphism in innate immune genes in Indian cattle (Bos indicus) and buffalo (Bubalus bubalis) using next generation sequencing technology

scientific article

Expression profiling revealed keratins and interleukins as potential biomarkers in squamous cell carcinoma of horn in Indian bullocks (Bos indicus)

scientific article published on 05 February 2020

Feasibility of Genome-Wide Screening for Biosafety Assessment of Probiotics: A Case Study of Lactobacillus helveticus MTCC 5463.

scientific article published in December 2015

First Draft Genome Sequence of Salmonella enterica Serovar Gallinarum Strain VTCCBAA614, Isolated from Chicken in India

scientific article

Functional Characterization Reveals Novel Putative Coding Sequences in Prevotella ruminicola Genome Extracted from Rumen Metagenomic Studies

scientific article published on 22 August 2015

Functional gene profiling through metaRNAseq approach reveals diet-dependent variation in rumen microbiota of buffalo (Bubalus bubalis).

scientific article

Genetic characterization of Indian peste des petits ruminants virus (PPRV) by sequencing and phylogenetic analysis of fusion protein and nucleoprotein gene segments

scientific article published on 11 September 2007

Genetic polymorphism of toll-like receptors 4 gene by polymerase chain reaction-restriction fragment length polymorphisms, polymerase chain reaction-single-strand conformational polymorphism to correlate with mastitic cows

scientific article published on 15 May 2015

Genome Sequence of Salt-Tolerant Bacillus safensis Strain VK, Isolated from Saline Desert Area of Gujarat, India

scientific article published on 5 September 2013

Genome Sequence of Salt-Tolerant Bacillus safensis Strain VK, Isolated from Saline Desert Area of Gujarat, India.

scientific article published on 17 April 2014

Genome sequence of Pasteurella multocida subsp. gallicida Anand1_poultry.

scientific article

Genomic analysis of dairy starter culture Streptococcus thermophilus MTCC 5461.

scientific article published in April 2013

Genomic analysis of host - Peste des petits ruminants vaccine viral transcriptome uncovers transcription factors modulating immune regulatory pathways

scientific article

Geriatric Respondents and Non-Respondents to Probiotic Intervention Can be Differentiated by Inherent Gut Microbiome Composition

scientific article

Goat activin receptor type IIB knockdown by artificial microRNAs in vitro.

scientific article published on 31 July 2014

Goat activin receptor type IIB knockdown by muscle specific promoter driven artificial microRNAs.

scientific article published on 7 August 2014

H19 gene methylation study in Indian buffalo (Bubalus bubalis).

scientific article

High potential source for biomass degradation enzyme discovery and environmental aspects revealed through metagenomics of Indian buffalo rumen

scientific article

High through put 16S rRNA gene-based pyrosequencing analysis of the fecal microbiota of high FCR and low FCR broiler growers

scientific article published on 10 October 2012

Host transcriptome and microbiome interaction modulates physiology of full-sibs broilers with divergent feed conversion ratio

scientific article published on 20 September 2019

Human leukocyte antigen alleles, genotypes and haplotypes frequencies in renal transplant donors and recipients from West Central India

scientific article published on April 2013

Identification and antibiogram of microbes associated with bovine mastitis.

scientific article published in July 2011

Identification and quantification of novel RNA isoforms in horn cancer of Bos indicus by comprehensive RNA-Seq.

scientific article

Identification of novel SNPs in differentially expressed genes and its association with horn cancer of Bos indicus bullocks by next-generation sequencing.

scientific article published on 27 January 2016

Identification of novel exons and transcripts by comprehensive RNA-Seq of horn cancer transcriptome in Bos indicus

scientific article published on 14 March 2013

Identification of novel splice variants in horn cancer by RNA-Seq analysis in Zebu cattle

scientific article published on 10 October 2012

Identification of novel transcripts deregulated in buccal cancer by RNA-seq.

scientific article published on 27 July 2012

Identification of putative SNPs in progressive retinal atrophy affected Canis lupus familiaris using exome sequencing

scientific article published on 29 October 2015

Immunomodulation of IL-1, IL-6 and IL-8 cytokines by Prosopis juliflora alkaloids during bovine sub-clinical mastitis

scientific article published on 14 September 2018

Impact of levels of total digestible nutrients on microbiome, enzyme profile and degradation of feeds in buffalo rumen.

scientific article

In silico analysis of consequences of non-synonymous SNPs of Slc11a2 gene in Indian bovines

scientific article published on 30 May 2015

In vitro expression profiling of myostatin, follistatin, decorin and muscle-specific transcription factors in adult caprine contractile myotubes.

scientific article published on 17 March 2011

In vitro osteogenic potential of canine adipose derived stem cells.

scientific article published in January 2012

In vitro silencing of myostatin gene by shRNAs in chicken embryonic myoblast cells

scientific article

Influence of Diet Composition on Cattle Rumen Methanogenesis: A Comparative Metagenomic Analysis in Indian and Exotic Cattle

scientific article published on 16 January 2017

Insight into bovine (Bos indicus) spermatozoal whole transcriptome profile

scientific article published on 12 February 2019

Insight into the Draft Genome Sequence of Human Isolate Lactobacillus rhamnosus LR231, a Bacterium with Probiotic Potential

scientific article published on 27 February 2014

Insights into resistome and stress responses genes in Bubalus bubalis rumen through metagenomic analysis

scientific article

Ion torrent next-generation sequencing reveals the complete mitochondrial genome of endangered mahseer Tor khudree (Sykes, 1839).

scientific article published on 8 July 2015

Isolation and characterization of H9N2 influenza virus isolates from poultry respiratory disease outbreak.

scientific article published on 18 April 2014

Isolation and characterization of novel multifunctional recombinant family 26 glycoside hydrolase from Mehsani buffalo rumen metagenome.

scientific article

Isolation of chitinolytic Clostridium sp. NCR from Mehsani buffalo rumen, its genomic analysis and potential role in rumen

scientific article published on 30 May 2015

Low-depth shotgun sequencing resolves complete mitochondrial genome sequence of Labeo rohita

scientific article

Metagenome of Mehsani buffalo rumen microbiota: an assessment of variation in feed-dependent phylogenetic and functional classification

scientific article

Metagenomic analysis of Surti buffalo (Bubalus bubalis) rumen: a preliminary study

scientific article published on 27 September 2011

Metagenomic analysis of buffalo rumen microbiome: Effect of roughage diet on Dormancy and Sporulation genes

scientific article published on April 2014

Metagenomic analysis of virulence-associated and antibiotic resistance genes of microbes in rumen of Indian buffalo (Bubalus bubalis).

scientific article published on 28 July 2012

Metagenomic characterisation of ruminal bacterial diversity in buffaloes from birth to adulthood using 16S rRNA gene amplicon sequencing

article

Metagenomic data of DNA viruses of poultry affected with respiratory tract infection.

scientific article

Metagenomic sequence of saline desert microbiota from wild ass sanctuary, Little Rann of Kutch, Gujarat, India

scientific article published on 15 January 2015

Methanogen diversity in the rumen of Indian Surti buffalo (Bubalus bubalis), assessed by 16S rDNA analysis.

scientific article published on 19 April 2011

Methanogenic diversity studies within the rumen of Surti buffaloes based on methyl coenzyme M reductase A (mcrA) genes point to Methanobacteriales.

scientific article

Microbial and Carbohydrate Active Enzyme profile of buffalo rumen metagenome and their alteration in response to variation in the diet

scientific article

Microbial profiles of liquid and solid fraction associated biomaterial in buffalo rumen fed green and dry roughage diets by tagged 16S rRNA gene pyrosequencing

scientific article

Microbiological profiles in clinical and subclinical cases of mastitis in milking Jafarabadi buffalo

scientific article published on 22 May 2019

Milk microbiome signatures of subclinical mastitis-affected cattle analysed by shotgun sequencing

scientific article published on 20 February 2012

Mining of Ruminant Microbial Phytase (RPHY1) from Metagenomic Data of Mehsani Buffalo Breed: Identification, Gene Cloning, and Characterization

scientific article

Molecular Genetic Diversity and Quantitation of Methanogen in Ruminal Fluid of Buffalo (Bubalus bubalis) Fed Ration (Wheat Straw and Concentrate Mixture Diet).

scientific article

Molecular analysis of the bacterial microbiome in the forestomach fluid from the dromedary camel (Camelus dromedarius).

scientific article published in January 2013

Molecular characterization and expression profiling of 17-beta-hydroxysteroid dehydrogenase 2 and spermatogenesis associated protein 2 genes in endangered catfish, Clarias magur (Hamilton, 1822)

scientific article published on 20 December 2018

Molecular identification of methanogenic archaea from surti buffaloes (bubalus bubalis), reveals more hydrogenotrophic methanogens phylotypes.

scientific article

Myostatin gene silencing by RNA interference in chicken embryo fibroblast cells

scientific article published on 15 March 2012

Myostatin knockdown and its effect on myogenic gene expression program in stably transfected goat myoblasts.

scientific article published on 28 March 2014

Pathotypic and Sequence Characterization of Newcastle Disease Viruses from Vaccinated Chickens Reveals Circulation of Genotype II, IV and XIII and in India

scientific article published on 18 November 2014

Possible involvement of altered expression of BDNF exon II gene and specific dopamine receptors in simvastatin induced beneficial effects in depression.

scientific article published on 21 January 2014

Potential functional gene diversity involved in methanogenesis and methanogenic community structure in Indian buffalo (Bubalus bubalis) rumen.

scientific article published on 8 February 2015

Qualitative and quantitative assessment of Theileria annulata in cattle and buffaloes Polymerase Chain Reaction

scientific article published on December 2014

RNA-Seq reveals the molecular mechanism of trapping and killing of root-knot nematodes by nematode-trapping fungi.

scientific article published on 4 March 2017

Serogroups, atypical biochemical characters, colicinogeny and antibiotic resistance pattern of Shiga toxin-producing Escherichia coli isolated from diarrhoeic calves in Gujarat, India

scientific article published in January 2008

Short hairpin RNA-induced myostatin gene silencing in caprine myoblast cells in vitro

scientific article published on 28 December 2012

Shotgun metagenomic sequencing based microbial diversity assessment of Lasundra hot spring, India

scientific article published on 24 March 2015

Somatotropin-mediated gene expression profiling of differentially displayed ESTs during lactation in Indian buffalo (Bubalus bubalis).

scientific article

Stable suppression of myostatin gene expression in goat fetal fibroblast cells by lentiviral vector-mediated RNAi

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Study of rumen metagenome community using qPCR under different diets

scientific article

Taxonomic and gene-centric metagenomics of the fecal microbiome of low and high feed conversion ratio (FCR) broilers.

scientific article

The effect of a high-roughage diet on the metabolism of aromatic compounds by rumen microbes: a metagenomic study using Mehsani buffalo (Bubalus bubalis).

scientific article published on 28 December 2015

The road less travelled: The efficacy of canine pluripotent stem cells

scientific article published on 20 February 2019

Tissue-specific temporal exome capture revealed muscle-specific genes and SNPs in Indian buffalo (Bubalus bubalis).

scientific article published on April 2012

Transcriptome analysis and SNP identification in SCC of horn in (Bos indicus) Indian cattle

scientific article published on 24 August 2013

Transcriptome analysis of the adult rumen fluke Paramphistomum cervi following next generation sequencing

scientific article published on 3 June 2015

Transcriptomic analysis to affirm the regulatory role of long non-coding RNA in horn cancer of Indian zebu cattle breed Kankrej (Bos indicus)

scientific article published on 31 July 2019

Transcriptomic dissection of myogenic differentiation signature in caprine by RNA-Seq.

scientific article published on 11 January 2014

Use of real-time PCR technique in determination of major fibrolytic and non fibrolytic bacteria present in Indian Surti buffaloes (Bubalus bubalis).

scientific article

VDAP-GUI: a user-friendly pipeline for variant discovery and annotation of raw next-generation sequencing data.

scientific article published on 15 February 2016

Whole-Genome Sequence of Listeria monocytogenes Strains from Clinical and Environmental Samples from Varanasi, India

scientific article published on 5 February 2015

Whole-genome based validation of the adaptive properties of Indian origin probiotic Lactobacillus helveticus MTCC 5463

scientific article published on 13 June 2014

Whole-genome sequence of sungri/96 vaccine strain of peste des petits ruminants virus

scientific article published on 13 February 2014

Whole-genome shotgun sequencing of Lactobacillus rhamnosus MTCC 5462, a strain with probiotic potential.

scientific article published on March 2012

Whole-genome shotgun sequencing of an Indian-origin Lactobacillus helveticus strain, MTCC 5463, with probiotic potential

scientific article

Whole-genome shotgun sequencing of the extremophile Alkalibacillus haloalkaliphilus C-5, of Indian origin

scientific article published on September 2012

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