List of works - Matthew P Blakeley

"To Be or Not to Be" Protonated: Atomic Details of Human Carbonic Anhydrase-Clinical Drug Complexes by Neutron Crystallography and Simulation.

scientific article published on 29 January 2018

A molecular mechanism for transthyretin amyloidogenesis

scientific article published on 25 February 2019

A preliminary neutron crystallographic study of an A-DNA crystal.

scientific article published on 12 February 2009

A preliminary neutron crystallographic study of proteinase K at pD 6.5.

scientific article published on 31 January 2009

A preliminary neutron diffraction study of rasburicase, a recombinant urate oxidase enzyme, complexed with 8-azaxanthin

scientific article published on 28 February 2006

An extended N-H bond, driven by a conserved second-order interaction, orients the flavin N5 orbital in cholesterol oxidase

scientific article published on 18 January 2017

Back-exchange of deuterium in neutron crystallography: characterization by IR spectroscopy.

scientific article published on 24 March 2017

Binding site asymmetry in human transthyretin: insights from a joint neutron and X-ray crystallographic analysis using perdeuterated protein

scientific article

Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography

scientific article published on 23 June 2019

Combined neutron and X-ray diffraction studies of DNA in crystals and solutions

article

Comparison of hydrogen determination with X-ray and neutron crystallography in a human aldose reductase–inhibitor complex

scientific article published on 19 April 2006

Direct visualization of a Fe(IV)-OH intermediate in a heme enzyme

scientific article

Direct visualization of critical hydrogen atoms in a pyridoxal 5'-phosphate enzyme

scientific article published on 16 October 2017

Elucidation of hydrogen bonding patterns in ligand-free, lactose- and glycerol-bound galectin-3C by neutron crystallography to guide drug design.

scientific article published on 19 April 2018

Heme enzymes. Neutron cryo-crystallography captures the protonation state of ferryl heme in a peroxidase

scientific article

Heme peroxidase-Trapping intermediates by cryo neutron crystallography

scientific article published on 13 February 2020

High-resolution neutron and X-ray diffraction room-temperature studies of an H-FABP-oleic acid complex: study of the internal water cluster and ligand binding by a transferred multipolar electron-density distribution

scientific article

High-resolution neutron protein crystallography with radically small crystal volumes: application of perdeuteration to human aldose reductase.

scientific article

Identification of the elusive hydronium ion exchanging roles with a proton in an enzyme at lower pH values

scientific article

Incorporation of methyl-protonated valine and leucine residues into deuterated ocean pout type III antifreeze protein: expression, crystallization and preliminary neutron diffraction studies.

scientific article

Inorganic pyrophosphatase crystals from Thermococcus thioreducensfor X-ray and neutron diffraction

scientific article

Joint X-ray/Neutron Crystallographic Study of HIV-1 Protease with Clinical Inhibitor Amprenavir: Insights for Drug Design ⬇️

scientific article published on June 28, 2013

L-Arabinose binding, isomerization, and epimerization by D-xylose isomerase: X-ray/neutron crystallographic and molecular simulation study

scientific article

Large crystal growth by thermal control allows combined X-ray and neutron crystallographic studies to elucidate the protonation states in Aspergillus flavus urate oxidase.

scientific article

Long-Range Electrostatics-Induced Two-Proton Transfer Captured by Neutron Crystallography in an Enzyme Catalytic Site

scientific article published on 09 March 2016

Metal Ion Roles and the Movement of Hydrogen during Reaction Catalyzed by D-Xylose Isomerase: A Joint X-Ray and Neutron Diffraction Study

scientific article

Near-atomic resolution neutron crystallography on perdeuterated Pyrococcus furiosus rubredoxin: implication of hydronium ions and protonation state equilibria in redox changes

scientific article

Neutron Crystallography Detects Differences in Protein Dynamics: Structure of the PKG II Cyclic Nucleotide Binding Domain in Complex with an Activator.

scientific article

Neutron Laue macromolecular crystallography.

scientific article published on 3 August 2006

Neutron crystallography aids in drug design

scientific article published on 31 August 2016

Neutron crystallography reveals mechanisms used by Pseudomonas aeruginosa for host-cell binding

scientific article published on 11 January 2022

Neutron crystallography: opportunities, challenges, and limitations

scientific article published on 07 August 2008

Neutron diffraction reveals hydrogen bonds critical for cGMP-selective activation: insights for cGMP-dependent protein kinase agonist design.

scientific article

Neutron diffraction studies of a class A beta-lactamase Toho-1 E166A/R274N/R276N triple mutant

scientific article

Neutron macromolecular crystallography with LADI-III.

scientific article published on 20 October 2010

Neutron structures of <i>Leishmania mexicana</i> triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps

scientific article published on 03 June 2021

Perdeuteration, crystallization, data collection and comparison of five neutron diffraction data sets of complexes of human galectin-3C

scientific article

Perdeuteration, large crystal growth and neutron data collection of Leishmania mexicana triose-phosphate isomerase E65Q variant

scientific article published on 02 April 2019

Perdeuteration, purification, crystallization and preliminary neutron diffraction of an ocean pout type III antifreeze protein.

scientific article published on 26 March 2009

Perdeuteration: improved visualization of solvent structure in neutron macromolecular crystallography

scientific article

Preliminary neutron crystallographic study of human transthyretin ⬇️

scientific article published on October 27, 2011

Production of perdeuterated fucose from glyco-engineered bacteria

scientific article published on 27 June 2020

Production, crystallization and neutron diffraction of fully deuterated human myelin peripheral membrane protein P2.

scientific article published on 23 October 2015

Protein kinase A in the neutron beam: Insights for catalysis from directly observing protons

scientific article published on 17 January 2020

Proton transfer and drug binding details revealed in neutron diffraction studies of wild-type and drug resistant HIV-1 protease

scientific article published on 10 January 2020

Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase

scientific article

Rapid visualization of hydrogen positions in protein neutron crystallographic structures

scientific article

Room Temperature Neutron Crystallography of Drug Resistant HIV-1 Protease Uncovers Limitations of X-ray Structural Analysis at 100 K.

scientific article published on 14 February 2017

Sub-atomic resolution X-ray crystallography and neutron crystallography: promise, challenges and potential

scientific article (publication date: July 2015)

Sweet neutron crystallography

scientific article published on October 20, 2010

Synchrotron and neutron techniques in biological crystallography.

scientific article published on 16 September 2004

Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA

scientific article published on 20 September 2018

The active site protonation states of perdeuterated Toho-1 β-lactamase determined by neutron diffraction support a role for Glu166 as the general base in acylation

scientific article

The neutron structure of urate oxidase resolves a long-standing mechanistic conundrum and reveals unexpected changes in protonation

scientific article

Unambiguous determination of H-atom positions: comparing results from neutron and high-resolution X-ray crystallography

scientific article

Using neutron crystallography to elucidate the basis of selective inhibition of carbonic anhydrase by saccharin and a derivative

scientific article published on 11 January 2019

Visualizing the protons in a metalloenzyme electron proton transfer pathway

scientific article published on 09 March 2020

Zooming in on protons: Neutron structure of protein kinase A trapped in a product complex

scientific article published on 20 March 2019

List of works by Matthew P Blakeley

"To Be or Not to Be" Protonated: Atomic Details of Human Carbonic Anhydrase-Clinical Drug Complexes by Neutron Crystallography and Simulation.

A molecular mechanism for transthyretin amyloidogenesis

A preliminary neutron crystallographic study of an A-DNA crystal.

A preliminary neutron crystallographic study of proteinase K at pD 6.5.

A preliminary neutron diffraction study of rasburicase, a recombinant urate oxidase enzyme, complexed with 8-azaxanthin

An extended N-H bond, driven by a conserved second-order interaction, orients the flavin N5 orbital in cholesterol oxidase

Back-exchange of deuterium in neutron crystallography: characterization by IR spectroscopy.

Binding site asymmetry in human transthyretin: insights from a joint neutron and X-ray crystallographic analysis using perdeuterated protein

Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography

Combined neutron and X-ray diffraction studies of DNA in crystals and solutions

Comparison of hydrogen determination with X-ray and neutron crystallography in a human aldose reductase–inhibitor complex

Direct visualization of a Fe(IV)-OH intermediate in a heme enzyme

Direct visualization of critical hydrogen atoms in a pyridoxal 5'-phosphate enzyme

Elucidation of hydrogen bonding patterns in ligand-free, lactose- and glycerol-bound galectin-3C by neutron crystallography to guide drug design.

Heme enzymes. Neutron cryo-crystallography captures the protonation state of ferryl heme in a peroxidase

Heme peroxidase-Trapping intermediates by cryo neutron crystallography

High-resolution neutron and X-ray diffraction room-temperature studies of an H-FABP-oleic acid complex: study of the internal water cluster and ligand binding by a transferred multipolar electron-density distribution

High-resolution neutron protein crystallography with radically small crystal volumes: application of perdeuteration to human aldose reductase.

Identification of the elusive hydronium ion exchanging roles with a proton in an enzyme at lower pH values

Incorporation of methyl-protonated valine and leucine residues into deuterated ocean pout type III antifreeze protein: expression, crystallization and preliminary neutron diffraction studies.

Inorganic pyrophosphatase crystals from Thermococcus thioreducensfor X-ray and neutron diffraction

Joint X-ray/Neutron Crystallographic Study of HIV-1 Protease with Clinical Inhibitor Amprenavir: Insights for Drug Design ⬇️

L-Arabinose binding, isomerization, and epimerization by D-xylose isomerase: X-ray/neutron crystallographic and molecular simulation study

Large crystal growth by thermal control allows combined X-ray and neutron crystallographic studies to elucidate the protonation states in Aspergillus flavus urate oxidase.

Long-Range Electrostatics-Induced Two-Proton Transfer Captured by Neutron Crystallography in an Enzyme Catalytic Site

Metal Ion Roles and the Movement of Hydrogen during Reaction Catalyzed by D-Xylose Isomerase: A Joint X-Ray and Neutron Diffraction Study

Near-atomic resolution neutron crystallography on perdeuterated Pyrococcus furiosus rubredoxin: implication of hydronium ions and protonation state equilibria in redox changes

Neutron Crystallography Detects Differences in Protein Dynamics: Structure of the PKG II Cyclic Nucleotide Binding Domain in Complex with an Activator.

Neutron Laue macromolecular crystallography.

Neutron crystallography aids in drug design

Neutron crystallography reveals mechanisms used by Pseudomonas aeruginosa for host-cell binding

Neutron crystallography: opportunities, challenges, and limitations

Neutron diffraction reveals hydrogen bonds critical for cGMP-selective activation: insights for cGMP-dependent protein kinase agonist design.

Neutron diffraction studies of a class A beta-lactamase Toho-1 E166A/R274N/R276N triple mutant

Neutron macromolecular crystallography with LADI-III.

Neutron structures of <i>Leishmania mexicana</i> triosephosphate isomerase in complex with reaction-intermediate mimics shed light on the proton-shuttling steps

Perdeuteration, crystallization, data collection and comparison of five neutron diffraction data sets of complexes of human galectin-3C

Perdeuteration, large crystal growth and neutron data collection of Leishmania mexicana triose-phosphate isomerase E65Q variant

Perdeuteration, purification, crystallization and preliminary neutron diffraction of an ocean pout type III antifreeze protein.

Perdeuteration: improved visualization of solvent structure in neutron macromolecular crystallography

Preliminary neutron crystallographic study of human transthyretin ⬇️

Production of perdeuterated fucose from glyco-engineered bacteria

Production, crystallization and neutron diffraction of fully deuterated human myelin peripheral membrane protein P2.

Protein kinase A in the neutron beam: Insights for catalysis from directly observing protons

Proton transfer and drug binding details revealed in neutron diffraction studies of wild-type and drug resistant HIV-1 protease

Quantum model of catalysis based on a mobile proton revealed by subatomic x-ray and neutron diffraction studies of h-aldose reductase

Rapid visualization of hydrogen positions in protein neutron crystallographic structures

Room Temperature Neutron Crystallography of Drug Resistant HIV-1 Protease Uncovers Limitations of X-ray Structural Analysis at 100 K.

Sub-atomic resolution X-ray crystallography and neutron crystallography: promise, challenges and potential

Sweet neutron crystallography

Synchrotron and neutron techniques in biological crystallography.

Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA

The active site protonation states of perdeuterated Toho-1 β-lactamase determined by neutron diffraction support a role for Glu166 as the general base in acylation

The neutron structure of urate oxidase resolves a long-standing mechanistic conundrum and reveals unexpected changes in protonation

Unambiguous determination of H-atom positions: comparing results from neutron and high-resolution X-ray crystallography

Using neutron crystallography to elucidate the basis of selective inhibition of carbonic anhydrase by saccharin and a derivative

Visualizing the protons in a metalloenzyme electron proton transfer pathway

Zooming in on protons: Neutron structure of protein kinase A trapped in a product complex