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List of works by Swee Hoe Ong

A genomics approach to understanding host response during dengue infection

scientific article published on January 2006

A method for full genome sequencing of all four serotypes of the dengue virus

scientific article published on 30 June 2010

Accurate characterization of the IFITM locus using MiSeq and PacBio sequencing shows genetic variation in Galliformes

scientific article (publication date: 30 May 2017)

Author Correction: Optimised metrics for CRISPR-KO screens with second-generation gRNA libraries

scientific article published on 12 April 2018

Comparative analysis of the chicken IFITM locus by targeted genome sequencing reveals evolution of the locus and positive selection in IFITM1 and IFITM3

scientific article published on 05 April 2019

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

scientific article published on 13 July 2017

Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting

scientific article published on 23 July 2014

DengueInfo: A web portal to dengue information resources

scientific article

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

scientific article published in January 2018

Epidermal Tissue Adapts to Restrain Progenitors Carrying Clonal p53 Mutations

scientific article published on 27 September 2018

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing

scientific article published on 4 August 2016

Genome-wide CRISPR-KO Screen Uncovers mTORC1-Mediated Gsk3 Regulation in Naive Pluripotency Maintenance and Dissolution

scientific article published on 01 July 2018

Genomic Epidemiology of a Dengue Virus Epidemic in Urban Singapore

scientific article

IDBD: Infectious Disease Biomarker Database

scientific article

IVA: accurate de novo assembly of RNA virus genomes

scientific article

KAT7 is a genetic vulnerability of acute myeloid leukemias driven by MLL rearrangements

scientific article published on 06 August 2020

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

scientific article

Optimised metrics for CRISPR-KO screens with second-generation gRNA libraries

scientific article published on 7 August 2017

Outcompeting p53-Mutant Cells in the Normal Esophagus by Redox Manipulation

scientific article published on 18 July 2019

Patient-based transcriptome-wide analysis identify interferon and ubiquination pathways as potential predictors of influenza A disease severity

scientific article

Periodic re-emergence of endemic strains with strong epidemic potential-a proposed explanation for the 2004 Indonesian dengue epidemic

scientific article

Plasmablasts generated during repeated dengue infection are virus glycoprotein-specific and bind to multiple virus serotypes

scientific article published on 14 November 2012

RNAmut: robust identification of somatic mutations in acute myeloid leukemia using RNA-seq

scientific article published on 24 October 2019

Selection of oncogenic mutant clones in normal human skin varies with body site

scientific article published on 21 October 2020

Spatial competition shapes the dynamic mutational landscape of normal esophageal epithelium

scientific article published on 18 May 2020

Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences

scientific article

Spread, circulation, and evolution of the Middle East respiratory syndrome coronavirus

scientific article published on 18 February 2014

Systems consequences of amplicon formation in human breast cancer

scientific article

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