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List of works by Bertrand Thirion

A Comparative Study of Algorithms for Intra- and Inter-subjects fMRI Decoding

scientific article published in 2012

A Comparison of Metrics and Algorithms for Fiber Clustering

A Framework for Inter-Subject Prediction of Functional Connectivity From Structural Networks.

scientific article published on 6 August 2013

A Probabilistic Framework to Infer Brain Functional Connectivity from Anatomical Connections

A disconnection account of Gerstmann syndrome: functional neuroanatomy evidence

scientific article

A fully Bayesian approach to the parcel-based detection-estimation of brain activity in fMRI.

scientific article published on 26 February 2008

A novel sparse graphical approach for multimodal brain connectivity inference

scientific article published on 01 January 2012

A novel sparse group Gaussian graphical model for functional connectivity estimation

scientific article published in January 2013

A probabilistic framework to infer brain functional connectivity from anatomical connections

scientific article published in January 2011

A supervised clustering approach for fMRI-based inference of brain states

scientific article published in June 2012

Accurate Definition of Brain Regions Position through the Functional Landmark Approach

scientific article published on 01 January 2010

An automatic valuation system in the human brain: evidence from functional neuroimaging

scientific article

An empirical comparison of surface-based and volume-based group studies in neuroimaging

scientific article published on 22 June 2012

Analysis of a large fMRI cohort: Statistical and methodological issues for group analyses

scientific article

Assessing and tuning brain decoders: Cross-validation, caveats, and guidelines ⬇️

scientific article

Atlases of cognition with large-scale human brain mapping

Bayesian estimation of probabilistic atlas for anatomically-informed functional MRI group analyses

scientific article published on 01 January 2013

Benchmarking functional connectome-based predictive models for resting-state fMRI

scientific article published on 02 March 2019

Benchmarking solvers for TV-ℓ 1 least-squares and logistic regression in brain imaging

scientific article published in June 2014

Best practices in data analysis and sharing in neuroimaging using MRI.

scientific article

Beyond Brain Reading: Randomized Sparsity and Clustering to Simultaneously Predict and Identify

scientific article published in 2012

Bootstrapped Permutation Test for Multiresponse Inference on Brain Behavior Associations

scientific article published on January 2015

Brain covariance selection: better individual functional connectivity models using population prior ⬇️

Brain-based ranking of cognitive domains to predict schizophrenia

scientific article published on 16 July 2019

Challenging the estimation of cortical activity from MEG with simulated fMRI-constrained retinotopic maps

scientific article published in August 2007

Cohort-level brain mapping: learning cognitive atoms to single out specialized regions

scientific article

Combined permutation test and mixed-effect model for group average analysis in fMRI.

scientific article published in May 2006

Connectivity-Informed fMRI Activation Detection

scientific article published on 01 January 2011

Connectivity-based parcellation of the cortical mantle using q-ball diffusion imaging

scientific article published in January 2008

Connectivity-based parcellation: Critique and implications

scientific article

Connectivity-informed Sparse Classifiers for fMRI Brain Decoding

Data-driven HRF estimation for encoding and decoding models ⬇️

scientific article

Dealing with the shortcomings of spatial normalization: multi-subject parcellation of fMRI datasets

scientific article published in August 2006

Deciphering cortical number coding from human brain activity patterns

scientific article published on 24 September 2009

Decoding Visual Percepts Induced by Word Reading with fMRI

scientific article published in July 2012

Decoding fMRI activity in the time domain improves classification performance

scientific article published on 08 August 2017

Deriving a Multi-subject Functional-Connectivity Atlas to Inform Connectome Estimation

scientific article published on 01 January 2014

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example ⬇️

scientific article

Detecting Outlying Subjects in High-Dimensional Neuroimaging Datasets with Regularized Minimum Covariance Determinant

scientific article published on 01 January 2011

Detecting outliers in high-dimensional neuroimaging datasets with robust covariance estimators

scientific article published on 24 May 2012

Detection of Brain Functional-Connectivity Difference in Post-stroke Patients Using Group-Level Covariance Modeling

scientific article published on 01 January 2010

Detection of signal synchronizations in resting-state fMRI datasets

scientific article published on 29 August 2005

Different shades of default mode disturbance in schizophrenia: Subnodal covariance estimation in structure and function.

scientific article published on 3 November 2017

Discriminative Network Models of Schizophrenia ⬇️

scientific article published in January 2009

Distinct alterations in Parkinson's medication-state and disease-state connectivity

scientific article published on 6 September 2017

Dynamical components analysis of fMRI data

article published in 2002

Dynamical components analysis of fMRI data through kernel PCA ⬇️

scientific article published on September 1, 2003

Early maturation of the linguistic dorsal pathway in human infants.

scientific article published in January 2011

Enhancing the Reproducibility of Group Analysis with Randomized Brain Parcellations

scientific article published on 01 January 2013

Exploring the Early Organization and Maturation of Linguistic Pathways in the Human Infant Brain

article

Extracting brain regions from rest fMRI with total-variation constrained dictionary learning

article by Alexandre Abraham et al published 2013 in Lecture Notes in Computer Science

FReM - Scalable and stable decoding with fast regularized ensemble of models

scientific article published on 10 October 2017

Fast reproducible identification and large-scale databasing of individual functional cognitive networks

scientific article

Feature characterization in fMRI data: the Information Bottleneck approach

scientific article published in December 2004

Finding landmarks in the functional brain: detection and use for group characterization

scientific article published on 01 January 2005

Fine-grain atlases of functional modes for fMRI analysis

scientific article published on 13 July 2020

Formal Models of the Network Co-occurrence Underlying Mental Operations

scientific article

Graph-based inter-subject pattern analysis of FMRI data

scientific article

HRF Estimation Improves Sensitivity of fMRI Encoding and Decoding Models

scientific article published in June 2013

Hierarchical Region-Network Sparsity for High-Dimensional Inference in Brain Imaging.

scientific article

High level group analysis of FMRI data based on Dirichlet process mixture models.

scientific article

How machine learning is shaping cognitive neuroimaging

scientific article

Hyperfrontality and hypoconnectivity during refreshing in schizophrenia

scientific article

ICA-based sparse features recovery from fMRI datasets

Identification of Mood-Relevant Brain Connections Using a Continuous, Subject-Driven Rumination Paradigm

scientific article

Identifying Predictive Regions from fMRI with TV-L1 Prior

scientific article published in June 2013

Implications of Inconsistencies between fMRI and dMRI on Multimodal Connectivity Estimation

scientific article published on 01 January 2013

Improved Brain Pattern Recovery through Ranking Approaches

scientific article published in July 2012

Improving Accuracy and Power with Transfer Learning Using a Meta-analytic Database ⬇️

scientific article published on 01 January 2012

Individual Brain Charting dataset extension, second release of high-resolution fMRI data for cognitive mapping

scientific article published on 16 October 2020

Individual Brain Charting, a high-resolution fMRI dataset for cognitive mapping.

scientific article

Inference of a HARDI Fiber Bundle Atlas Using a Two-Level Clustering Strategy ⬇️

scientific article published on 01 January 2010

Inter-subject Registration of Functional Images: Do We Need Anatomical Images?

scientific article published on 14 February 2018

Inverse retinotopy: inferring the visual content of images from brain activation patterns

scientific article

Joint T1 and Brain Fiber Log-Demons Registration Using Currents to Model Geometry ⬇️

scientific article published on 01 January 2012

Joint prediction of multiple scores captures better individual traits from brain images

scientific article

Learning Neural Representations of Human Cognition across Many fMRI Studies ⬇️

scientific article published in January 2017

Learning brain regions via large-scale online structured sparse dictionary learning ⬇️

scientific article published in January 2016

Learning to Rank from Medical Imaging Data

scholarly article by Fabian Pedregosa et al published 2012 in Lecture Notes in Computer Science

Machine learning for neuroimaging with scikit-learn

scientific article

Machine learning patterns for neuroimaging-genetic studies in the cloud

scientific article

Mapping paradigm ontologies to and from the brain ⬇️

Mixed-effect statistics for group analysis in fMRI: a nonparametric maximum likelihood approach

scientific article published on 17 August 2007

Modeling Shared responses in Neuroimaging Studies through MultiView ICA ⬇️

Multi-scale Mining of fMRI Data with Hierarchical Structured Sparsity

scientific article published in May 2011

Multi-scale network regression for brain-phenotype associations

scientific article published on 26 March 2020

Multi-subject Dictionary Learning to Segment an Atlas of Brain Spontaneous Activity

scientific article published in 2011

Multi-subject dictionary learning to segment an atlas of brain spontaneous activity

scientific article published in January 2011

Multiclass Sparse Bayesian Regression for fMRI-Based Prediction

scientific article published on 23 June 2011

Multilayer Scattering Image Analysis Fits fMRI Activity in Visual Areas

scientific article published in July 2012

Multiscale Mining of fMRI Data with Hierarchical Structured Sparsity

scientific article published in January 2012

NeuroQuery, comprehensive meta-analysis of human brain mapping

scientific article published on 04 March 2020

Neuroimaging Research: From Null-Hypothesis Falsification to Out-of-Sample Generalization

Non-parametric Density Modeling and Outlier-Detection in Medical Imaging Datasets

scholarly article by Virgile Fritsch et al published 2012 in Lecture Notes in Computer Science

On Spatial Selectivity and Prediction across Conditions with fMRI

article published in 2012

Patterns of autism symptoms: hidden structure in the ADOS and ADI-R instruments

scientific article published on 30 July 2020

Patterns of schizophrenia symptoms: hidden structure in the PANSS questionnaire

article published in 2018

Perceptual alternations between unbound moving contours and bound shape motion engage a ventral/dorsal interplay

scientific article published on 24 July 2012

Phase delays within visual cortex shape the response to steady-state visual stimulation

scientific article published in February 2011

Population shrinkage of covariance (PoSCE) for better individual brain functional-connectivity estimation

scientific article published on 15 March 2019

Principal Component Regression Predicts Functional Responses across Individuals

article

Probabilistic anatomo-functional parcellation of the cortex: how many regions?

scientific article published on 01 January 2008

Probabilistic atlas and geometric variability estimation to drive tissue segmentation

scientific article published on 2 April 2014

PyBIDS: Python tools for BIDS datasets

scientific article published on 12 August 2019

Randomized parcellation based inference

scientific article published on 19 November 2013

Recruitment of an area involved in eye movements during mental arithmetic

scientific article published on 7 May 2009

Recursive Nearest Agglomeration (ReNA): Fast Clustering for Approximation of Structured Signals

scientific article published on 13 March 2018

Relating Brain Functional Connectivity to Anatomical Connections: Model Selection

Robust Group-Level Inference in Neuroimaging Genetic Studies

Robust regression for large-scale neuroimaging studies

scientific article published on 28 February 2015

Schizophrenia as a network disease: disruption of emergent brain function in patients with auditory hallucinations

scientific article

Scikit-learn: Machine Learning in Python ⬇️

scientific article

Second Order Scattering Descriptors Predict fMRI Activity Due to Visual Textures

scientific article published in June 2013

Seeing it all: Convolutional network layers map the function of the human visual system

scientific article

Semi-Supervised Factored Logistic Regression for High-Dimensional Neuroimaging Data ⬇️

Shared endo-phenotypes of default mode dsfunction in attention deficit/hyperactivity disorder and autism spectrum disorder

Significant correlation between a set of genetic polymorphisms and a functional brain network revealed by feature selection and sparse Partial Least Squares

scientific article published on 8 July 2012

SmartPulse, a machine learning approach for calibration-free dynamic RF shimming: Preliminary study in a clinical environment

scientific article published on 30 June 2019

Statistical Learning for Resting-State fMRI: Successes and Challenges

Statistical control for spatio-temporal MEG/EEG source imaging with desparsified mutli-task Lasso ⬇️

scientific article published in November 2020

Structural analysis of fMRI data revisited: improving the sensitivity and reliability of fMRI group studies

scientific article

Subject-specific segregation of functional territories based on deep phenotyping

scientific article published on 24 December 2020

Subspecialization within default mode nodes characterized in 10,000 UK Biobank participants

article published in the Proceedings of the National Academy of Sciences of the United States of America

The functional database of the ARCHI project: Potential and perspectives

scientific article published on 04 May 2019

Total Variation Regularization Enhances Regression-Based Brain Activity Prediction

scientific article published in August 2010

Total variation regularization for fMRI-based prediction of behavior

scientific article

Transmodal Learning of Functional Networks for Alzheimer's Disease Prediction

scientific article published on 15 August 2016

Transport on Riemannian Manifold for Connectivity-Based Brain Decoding

scientific article published on 3 August 2015

Transport on Riemannian Manifold for Functional Connectivity-Based Classification

Variability in the analysis of a single neuroimaging dataset by many teams

scientific article published on 20 May 2020

Variational, geometric, and statistical methods for modeling brain anatomy and function.

scientific article

Very large fMRI study using the IMAGEN database: sensitivity-specificity and population effect modeling in relation to the underlying anatomy

scientific article published on 10 March 2012

Which fMRI clustering gives good brain parcellations?

scientific article (publication date: 2014)

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