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List of works by Masayoshi Itoh

A Transcriptional Switch Point During Hematopoietic Stem and Progenitor Cell Ontogeny

scientific article published on 16 November 2016

A computer-based method of selecting clones for a full-length cDNA project: simultaneous collection of negligibly redundant and variant cDNAs

scientific article

A draft network of ligand-receptor-mediated multicellular signalling in human

scientific article published on 22 July 2015

A promoter-level mammalian expression atlas

scientific article

A role for YY1 in sex-biased transcription revealed through X-linked promoter activity and allelic binding analyses

article

Abstract 2897: Recurrent transcriptome alterations across multiple cancer types

An atlas of active enhancers across human cell types and tissues

scientific article

An atlas of human long non-coding RNAs with accurate 5' ends.

scientific article

Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation

scientific article published on 26 March 2014

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease.

scientific article

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

scientific article (publication date: 5 December 2002)

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage

scientific article published on 14 December 2015

Author Correction: Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

scholarly article published in Scientific Data

Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer

scientific article

Cancer-associated fibroblast migration in non-small cell lung cancers is modulated by increased integrin α11 expression

scientific article published on 25 March 2021

Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells

scientific article

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

scientific article published on July 2003

Comparative transcriptomics of primary cells in vertebrates

scientific article published on 27 July 2020

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

scientific article

Comprehensive sequence analysis of translation termination sites in various eukaryotes

scientific article published in October 2002

Computational analysis of full-length mouse cDNAs compared with human genome sequences

scientific article published in September 2001

Computer-based methods for the mouse full-length cDNA encyclopedia: real-time sequence clustering for construction of a nonredundant cDNA library.

scientific article

Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli

scientific article published on 01 August 2018

Constructing ORFeome resources with removable termination codons

scientific article published on 01 July 2006

Correction to: Relatively frequent switching of transcription start sites during cerebellar development

scientific article

Correlation of EGFR or KRAS mutation status with 18F-FDG uptake on PET-CT scan in lung adenocarcinoma

scientific article

DeepCAGE Transcriptomics Reveal an Important Role of the Transcription Factor MAFB in the Lymphatic Endothelium

scientific article published on 4 November 2015

DeepCAGE transcriptomics identify HOXD10 as a transcription factor regulating lymphatic endothelial responses to VEGF-C.

scientific article published on 19 May 2016

Detecting expressed genes using CAGE.

scientific article

Development of a Tet-On Inducible Expression System for the Anhydrobiotic Cell Line, Pv11

scientific article published on 11 November 2020

Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation

scientific article published on 27 March 2014

Discovery of Transcription Factors Novel to Mouse Cerebellar Granule Cell Development Through Laser-Capture Microdissection

scientific article published on 6 January 2018

Discovery of molecular markers to discriminate corneal endothelial cells in the human body

scientific article published on 25 March 2015

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

scientific article

Dynamic force spectroscopy of the specific interaction between the PDZ domain and its recognition peptides

scientific article

Exciton Primer-mediated SNP detection in SmartAmp2 reactions.

scientific article published in February 2010

FANTOM5 CAGE profiles of human and mouse samples

scientific article published on 29 August 2017

Functional annotation of a full-length Arabidopsis cDNA collection

scientific article

Functional annotation of a full-length mouse cDNA collection

scientific article (publication date: 8 February 2001)

Functional annotation of human long noncoding RNAs via molecular phenotyping

scientific article published on 27 July 2020

Functional annotation of the vlinc class of non-coding RNAs using systems biology approach

scientific article published on 21 March 2016

Gateways to the FANTOM5 promoter level mammalian expression atlas

scientific article

Gemin2 plays an important role in stabilizing the survival of motor neuron complex

scientific article published on 16 February 2007

High quality genome assembly of the anhydrobiotic midge provides insights on a single chromosome-based emergence of extreme desiccation tolerance

scientific article published on 05 April 2022

High-resolution promoter map of human limbal epithelial cells cultured with keratinocyte growth factor and rho kinase inhibitor

scientific article

High-throughput transcription profiling identifies putative epigenetic regulators of hematopoiesis.

scientific article published on 26 March 2014

In vitro protein phosphorylation associated with cellular differentiation of Streptomyces griseus

scientific article published in February 1998

Integration of genetics and miRNA-target gene network identified disease biology implicated in tissue specificity

article

Integrative CAGE and DNA Methylation Profiling Identify Epigenetically Regulated Genes in NSCLC.

scientific article published on 11 July 2017

Mapping of 19032 mouse cDNAs on mouse chromosomes

scientific article published in January 2002

Mechanism of Chromium(VI) Toxicity in Escherichia coli: Is Hydrogen Peroxide Essential in Cr(VI) Toxicity? ⬇️

scientific article published on April 1, 1995

Monitoring transcription initiation activities in rat and dog.

scientific article

NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements

scientific article published on 02 September 2019

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks

scientific article published on May 2009

Nanoscale elongating control of the self-assembled protein filament with the cysteine-introduced building blocks.

scientific article published on 20 May 2009

New pyrosequencing method to analyze the function of the Klenow fragment (EXO-) for unnatural nucleic acids: pyrophosphorolysis and incorporation efficiency.

scientific article

Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes

scientific article

Novel biomarkers that assist in accurate discrimination of squamous cell carcinoma from adenocarcinoma of the lung

scientific article

Promoter Usage and Dynamics in Vascular Smooth Muscle Cells Exposed to Fibroblast Growth Factor-2 or Interleukin-1β

scientific article published in Scientific Reports

Promoter-level expression clustering identifies time development of transcriptional regulatory cascades initiated by ErbB receptors in breast cancer cells

scientific article published on 16 July 2015

Promoter-level transcriptome in primary lesions of endometrial cancer identified biomarkers associated with lymph node metastasis

scientific article published on 26 October 2017

Protein-protein interactions of the hyperthermophilic archaeon Pyrococcus horikoshii OT3.

scientific article

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE).

scientific article

Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology

scientific article published on 18 February 2007

Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.

scientific article

Redefinition of the human mast cell transcriptome by deep-CAGE sequencing

scientific article

Restricted Presence of POU6F2 in Human Corneal Endothelial Cells Uncovered by Extension of the Promoter-level Expression Atlas

scientific article published on 4 November 2017

Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment

scientific article published on 17 October 2009

Role of survival motor neuron complex components in small nuclear ribonucleoprotein assembly

scientific article published on 25 March 2009

Scanning single-molecule counting system for Eprobe with highly simple and effective approach

scientific article published on 15 December 2020

Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.

scientific article published in March 2018

Specific mesothelial signature marks the heterogeneity of mesenchymal stem cells from high-grade serous ovarian cancer.

scientific article

Systematic analysis of transcription start sites in avian development

scientific article published on 5 September 2017

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia

scientific article

Technical Advance: Transcription factor, promoter, and enhancer utilization in human myeloid cells

scientific article published on 25 February 2015

The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations

scientific article published on 26 March 2014

The frequent evolutionary birth and death of functional promoters in mouse and human

scientific article published on 30 July 2015

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

scientific article

Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs

scientific article published in April 2006

Transcription and enhancer profiling in human monocyte subsets

scientific article published on 26 March 2014

Transcription start site profiling of 15 anatomical regions of the Macaca mulatta central nervous system

scientific article

Transcriptional Dynamics During Human Adipogenesis and Its Link to Adipose Morphology and Distribution.

scientific article

Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response

scientific article

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.

scientific article

Transcriptome Analysis Uncovers a Growth-Promoting Activity of Orosomucoid-1 on Hepatocytes

scientific article

Transcriptome Analysis of Recurrently Deregulated Genes across Multiple Cancers Identifies New Pan-Cancer Biomarkers

scientific article published on 9 November 2015

Transcriptome analysis of periodontitis-associated fibroblasts by CAGE sequencing identified DLX5 and RUNX2 long variant as novel regulators involved in periodontitis

scientific article published on 20 September 2016

Unamplified cap analysis of gene expression on a single-molecule sequencer.

scientific article

Use of a competitive probe in assay design for genotyping of the UGT1A1 *28 microsatellite polymorphism by the smart amplification process

scientific article published on 01 October 2007

YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses

scientific article

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