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List of works by Amy A Caudy

A micrococcal nuclease homologue in RNAi effector complexes

scientific article

A new system for comparative functional genomics of Saccharomyces yeasts

scientific article

Accurate proteome-wide protein quantification from high-resolution 15N mass spectra

scientific article published on 19 December 2011

Biochemical and Structural Studies of Conserved Maf Proteins Revealed Nucleotide Pyrophosphatases with a Preference for Modified Nucleotides

scientific article

Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection

scientific article

CD25 deficiency causes an immune dysregulation, polyendocrinopathy, enteropathy, X-linked-like syndrome, and defective IL-10 expression from CD4 lymphocytes

scientific article

Comparative gene expression between two yeast species

scientific article

Computationally driven, quantitative experiments discover genes required for mitochondrial biogenesis

scientific article

Design of Custom Oligonucleotide Microarrays for Single Species or Interspecies Hybrids Using Array Oligo Selector

scientific article published on 01 January 2011

Directing experimental biology: a case study in mitochondrial biogenesis

scientific article

Dissection of genetically complex traits with extremely large pools of yeast segregants

scientific article published on April 2010

Element 1360 and RNAi components contribute to HP1-dependent silencing of a pericentric reporter

scientific article

Fragile X-related protein and VIG associate with the RNA interference machinery

scientific article published on October 2002

Functional Divergence between Histone Deacetylases in Fission Yeast by Distinct Cellular Localization and In Vivo Specificity.

scientific article published in July 2002

Functional divergence between histone deacetylases in fission yeast by distinct cellular localization and in vivo specificity

scientific article published on April 2002

Genetic and functional analyses of membrane cofactor protein (CD46) mutations in atypical hemolytic uremic syndrome

scientific article

Induction and biochemical purification of RNA-induced silencing complex from Drosophila S2 cells

scientific article published on January 2004

Interspecies systems biology uncovers metabolites affecting C. elegans gene expression and life history traits

scientific article

Mapping the pericentric heterochromatin by comparative genomic hybridization analysis and chromosome deletions in Drosophila melanogaster

scientific article

Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

scientific article

Metabolic cycling without cell division cycling in respiring yeast

scientific article published on 7 November 2011

Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer

scientific article

Nucleotide degradation and ribose salvage in yeast

scientific article

PRMT5 inhibition disrupts splicing and stemness in glioblastoma

scientific article published on 12 February 2021

Post-transcriptional gene silencing by double-stranded RNA

scientific article (publication date: February 2001)

Predicting cellular growth from gene expression signatures

scientific article

Predicting gene function in a hierarchical context with an ensemble of classifiers

scientific article published on 27 June 2008

Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS.

scientific article

Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system

scientific article

Regulation of transcriptional activation domain function by ubiquitin

scientific article published on 19 July 2001

Rhodoquinone biosynthesis in requires precursors generated by the kynurenine pathway

scientific article published on 24 June 2019

Riboneogenesis in Yeast

scientific article

Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells

scientific article (publication date: 15 April 2002)

Short hairpin activated gene silencing in mammalian cells

scientific article published in January 2004

Stable suppression of gene expression by RNAi in mammalian cells

scientific article

System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae

scientific article

Systematic analysis of complex genetic interactions.

scientific article

Systematic planning of genome-scale experiments in poorly studied species

scientific article

The future of deciphering personal genomes? The flies (and yeast and worms) still have it.

scientific article published on 27 September 2012

The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction

scientific article published on 26 June 2009

Uniform nomenclature for the mitochondrial contact site and cristae organizing system

scientific article published on March 2014

Xenopus ribosomal RNA gene intergenic spacer elements conferring transcriptional enhancement and nucleolar dominance-like competition in oocytes

scientific article published on 21 June 2002

Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes

scientific article published on 28 October 2013

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