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List of works by Sarath Chandra Janga

A circular RNA from the MDM2 locus controls cell cycle progression by suppressing p53 levels

scientific article published on 10 February 2020

A conserved enhancer regulates Il9 expression in multiple lineages

scientific article published in Nature Communications

A framework for identifying genotypic information from clinical records: exploiting integrated ontology structures to transfer annotations between ICD codes and Gene Ontologies.

scientific article published on 18 September 2015

A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes.

scientific article

An intricate network of conserved DNA upstream motifs and associated transcription factors regulate the expression of uromodulin gene.

scientific article published in March 2014

Bacterial regulatory networks are extremely flexible in evolution

scientific article

Bcl6 and Blimp1 reciprocally regulate ST2+ Treg cell development in the context of allergic airway inflammation

scientific article published on 13 March 2020

Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches

scientific article

Building integrated ontological knowledge structures with efficient approximation algorithms

scientific article published on 13 October 2015

CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion

scientific article published on 02 March 2022

Community-acquired rhinovirus infection is associated with changes in the airway microbiome

scientific article published on 18 March 2017

Comparative analysis of gene expression and regulation of replicative aging associated genes in S. cerevisiae.

scientific article

Comparative and temporal transcriptome analysis of peste des petits ruminants virus infected goat peripheral blood mononuclear cells

scientific article

Conservation of adjacency as evidence of paralogous operons

scientific article published on 11 October 2004

Conservation of transcriptional sensing systems in prokaryotes: a perspective from Escherichia coli.

scientific article published on 2 July 2007

Construction, structure and dynamics of post-transcriptional regulatory network directed by RNA-binding proteins

scientific article published on January 2011

Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli

scientific article published on 12 October 2007

DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes

scientific article published on July 2012

Database of RNA binding protein expression and disease dynamics (READ DB).

scientific article published on 25 July 2015

Differential Expression of miRNAs in Nontumor Liver Tissue of Patients With Hepatocellular Cancer Caused by Nonalcoholic Steatohepatitis Cirrhosis

scientific article published on 22 October 2016

Differential miRNA Expression in Cells and Matrix Vesicles in Vascular Smooth Muscle Cells from Rats with Kidney Disease

scientific article published on 26 June 2015

Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks.

scientific article

Dissecting the expression landscape of RNA-binding proteins in human cancers

scientific article

Dissecting the expression patterns of transcription factors across conditions using an integrated network-based approach.

scientific article

Dissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks

scientific article

Diversity and abundance of phosphonate biosynthetic genes in nature

scientific article published on 02 December 2013

Early transcriptome profile of goat peripheral blood mononuclear cells (PBMCs) infected with peste des petits ruminant's vaccine virus (Sungri/96) revealed induction of antiviral response in an interferon independent manner

scientific article published on 14 March 2019

Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects

scientific article published on 03 March 2020

Epitranscriptomic Code and Its Alterations in Human Disease

scientific article published on 14 August 2018

Eukaryotic gene regulation in three dimensions and its impact on genome evolution

scientific article

ExSurv: A Web Resource for Prognostic Analyses of Exons Across Human Cancers Using Clinical Transcriptomes

scientific article published on 7 August 2016

Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues.

scientific article published on 11 January 2018

Expression levels of SF3B3 correlate with prognosis and endocrine resistance in estrogen receptor-positive breast cancer.

scientific article

Extensive cross-talk and global regulators identified from an analysis of the integrated transcriptional and signaling network in Escherichia coli

scientific article published on 10 September 2012

From specific to global analysis of posttranscriptional regulation in eukaryotes: posttranscriptional regulatory networks

scientific article

Functional organisation of Escherichia coli transcriptional regulatory network

scientific article published on 29 May 2008

Genome-wide analysis of mRNA decay patterns during early Drosophila development

scientific article

Genomic analysis of host - Peste des petits ruminants vaccine viral transcriptome uncovers transcription factors modulating immune regulatory pathways

scientific article

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins

scientific article

Highlights from the Third International Society for Computational Biology Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology.

scientific article published on 20 November 2007

Human protein-RNA interaction network is highly stable across mammals

scientific article published on 30 December 2019

Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes--a genomic approach

scientific article published on 13 June 2006

Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin

scientific article

Interfacing systems biology and synthetic biology

scientific article published on 26 June 2009

Internal versus external effector and transcription factor gene pairs differ in their relative chromosomal position in Escherichia coli.

scientific article published on 12 January 2007

Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli.

scientific article

Interplay between posttranscriptional and posttranslational interactions of RNA-binding proteins

scientific article published on 09 April 2011

Knowledge Discovery Using Big Data in Biomedical Systems

scientific article published in July 2015

Lantern: an integrative repository of functional annotations for lncRNAs in the human genome

scientific article published on 26 May 2021

Long Non-Coding RNA Expression Levels Modulate Cell-Type-Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins

scientific article published on 06 August 2019

Loss of epigenetic regulator TET2 and oncogenic KIT regulate myeloid cell transformation via PI3K pathway.

scientific article published on 22 February 2018

MicroRNAs as post-transcriptional machines and their interplay with cellular networks

scientific article published on January 2011

Mutational landscape of RNA-binding proteins in human cancers

scientific article

Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons

scientific article

Network-based approaches for linking metabolism with environment

scientific article

New Twists in Detecting mRNA Modification Dynamics

scientific article published on 30 June 2020

Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data

scientific article published on 28 June 2019

OperomeDB: A Database of Condition-Specific Transcription Units in Prokaryotic Genomes

scientific article

Operons and the effect of genome redundancy in deciphering functional relationships using phylogenetic profiles

scientific article published in February 2008

PSIP1/p75 promotes tumorigenicity in breast cancer cells by promoting the transcription of cell cycle genes

scientific article published on 17 June 2017

Paracrine IL-2 Is Required for Optimal Type 2 Effector Cytokine Production.

scientific article published on 3 May 2017

Plasticity of transcriptional machinery in bacteria is increased by the repertoire of regulatory families

scientific article

Prediction and Validation of Transcription Factors Modulating the Expression of Sestrin3 Gene Using an Integrated Computational and Experimental Approach.

scientific article

Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome

scientific article

Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance

scientific article

Prognostic impact of HOTAIR expression is restricted to ER-negative breast cancers.

scientific article

RNA Editing in Pathogenesis of Cancer

scientific article

RNA-binding proteins in eye development and disease: implication of conserved RNA granule components

scientific article

Relationship between differential hepatic microRNA expression and decreased hepatic cytochrome P450 3A activity in cirrhosis

scientific article

Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans

scientific article published on 25 September 2020

Role of lncRNAs in health and disease-size and shape matter

scientific article published on 11 September 2014

SARS-CoV-2 contributes to altering the post-transcriptional regulatory networks across human tissues by sponging RNA binding proteins and micro-RNAs

scientific article published on 06 July 2020

STAT5 promotes accessibility and is required for BATF-mediated plasticity at the Il9 locus

scientific article published on 28 September 2020

Scaling relationship in the gene content of transcriptional machinery in bacteria

scientific article published on 17 July 2009

Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.

scientific article published on 23 March 2017

Splicing factor controls ER-positive breast cancer by altering metabolic pathways

scientific article published on 21 January 2019

Structure and evolution of gene regulatory networks in microbial genomes

scientific article published on 15 October 2007

Structure and organization of drug-target networks: insights from genomic approaches for drug discovery

scientific article published on 04 September 2009

Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean

scientific article

Targeting Bim via a lncRNA Morrbid Regulates the Survival of Preleukemic and Leukemic Cells

scientific article published on 01 June 2020

Ten simple rules for organizing a scientific meeting

scientific article (publication date: 27 June 2008)

The RNA-binding protein Musashi1 affects medulloblastoma growth via a network of cancer-related genes and is an indicator of poor prognosis

scientific article

The RavA-ViaA Chaperone-Like System Interacts with and Modulates the Activity of the Fumarate Reductase Respiratory Complex

scientific article published on 12 December 2016

The distinctive signatures of promoter regions and operon junctions across prokaryotes

scientific article

The human RBPome: from genes and proteins to human disease

scientific article published on 14 May 2015

The network of transcriptional interactions imposes linear constrains in the genome.

scientific article

The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons ⬇️

scientific article

Transcript stability in the protein interaction network of Escherichia coli

scientific article published on 09 December 2008

Transcriptional profiling of fetal hypothalamic TRH neurons

scientific article

Transcriptional regulation constrains the organization of genes on eukaryotic chromosomes

scholarly article

Transcriptional regulation shapes the organization of genes on bacterial chromosomes

scientific article

Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations

scientific article published on 14 September 2017

Uncovering RNA binding proteins associated with age and gender during liver maturation.

scientific article

Whole-genome sequence of sungri/96 vaccine strain of peste des petits ruminants virus

scientific article published on 13 February 2014

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