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List of works by Zheng Zheng

A cascade reaction network mimicking the basic functional steps of adaptive immune response.

scientific article

Application of the Movable Type Free Energy Method to the Caspase-Inhibitor BindingAffinity Study

scientific article published on 29 September 2019

Bringing Clarity to the Prediction of Protein-Ligand Binding Free Energies via "Blurring"

scientific article

Development of the knowledge-based and empirical combined scoring algorithm (KECSA) to score protein-ligand interactions

scientific article published on 24 April 2013

Free Energy-Based Conformational Search Algorithm Using the Movable Type Sampling Method

scientific article published on 24 November 2015

Free-Energy-Based Protein Design: Re-Engineering Cellular Retinoic Acid Binding Protein II Assisted by the Moveable-Type Approach

scientific article published on 28 February 2018

Generation of Pairwise Potentials Using Multidimensional Data Mining

scientific article published on 25 September 2018

Incorporation of side chain flexibility into protein binding pockets using MTflex.

scientific article published on 23 August 2016

KECSA-Movable Type Implicit Solvation Model (KMTISM).

scientific article

Ligand Identification Scoring Algorithm (LISA).

scientific article published on 25 May 2011

Model for the fast estimation of basis set superposition error in biomolecular systems ⬇️

scientific article published on October 14, 2011

On the fly estimation of host-guest binding free energies using the movable type method: participation in the SAMPL5 blind challenge

scientific article

Prediction of trypsin/molecular fragment binding affinities by free energy decomposition and empirical scores

scientific article published on 4 April 2012

Random Forest Refinement of Pairwise Potentials for Protein-Ligand Decoy Detection

scientific article published on 02 July 2019

Random Forest Refinement of the KECSA2 Knowledge-Based Scoring Function for Protein Decoy Detection

scientific article published on 20 February 2019

Statistics-based model for basis set superposition error correction in large biomolecules

scientific article published on 29 February 2012

The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions.

scientific article published in October 2017

The Movable Type Method Applied to Protein-Ligand Binding

scientific article published on December 2013

The Role of the Active Site Flap in Streptavidin/Biotin Complex Formation

scientific article published on 2 April 2018

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