List of works by Brenton R. Graveley

A regulator of Dscam mutually exclusive splicing fidelity.

scientific article

A systematic analysis of the factors that determine the strength of pre-mRNA splicing enhancers.

scientific article

Alternative splicing: increasing diversity in the proteomic world

scientific article (publication date: February 2001)

Alternative splicing: regulation without regulators

scientific article published on January 2009

Arginine/serine repeats are sufficient to constitute a splicing activation domain

scientific article published on November 2003

Assessing long-distance RNA sequence connectivity via RNA-templated DNA-DNA ligation

scientific article published on 13 April 2015

Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes

scholarly article

Author Correction: Perspectives on ENCODE

scholarly article

Circuitous route to transcription regulation

scientific article published on September 2013

Codon optimality is a major determinant of mRNA stability

scientific article published on March 2015

Comparative analysis of the transcriptome across distant species

scientific article

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

scientific article

Competing RNA secondary structures are required for mutually exclusive splicing of the Dscam exon 6 cluster.

scientific article

Conservation of an RNA regulatory map between Drosophila and mammals

scientific article

Coordinated control of splicing and translation

scientific article published in December 2005

DNA copy number evolution in Drosophila cell lines

scientific article

Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea

scientific article published on 24 June 2009

Determining exon connectivity in complex mRNAs by nanopore sequencing

scientific article

Diversity and dynamics of the Drosophila transcriptome

scientific article

Dynamic integration of splicing within gene regulatory pathways

scientific article

Effects of cocaine and withdrawal on the mouse nucleus accumbens transcriptome.

scientific article published on 27 November 2012

Enhancer-dependent 5'-splice site control of fruitless pre-mRNA splicing.

scientific article published on 19 March 2003

Essential features and rational design of CRISPR RNAs that function with the Cas RAMP module complex to cleave RNAs.

scientific article

Evolution of splicing regulatory networks in Drosophila

scientific article

Exon-specific RNAi: a tool for dissecting the functional relevance of alternative splicing

scientific article published on June 2002

Expanded encyclopaedias of DNA elements in the human and mouse genomes

scientific article published on 29 July 2020

Gene expression analysis of human induced pluripotent stem cell-derived neurons carrying copy number variants of chromosome 15q11-q13.1.

scientific article

Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation

scientific article

Genome-wide analysis of promoter architecture in Drosophila melanogaster.

scientific article

Genome-wide identification of zero nucleotide recursive splicing in Drosophila

scientific article published on 13 May 2015

Genomewide characterization of non-polyadenylated RNAs

scientific article

Genomic imprinting absent in Drosophila melanogaster adult females.

scientific article published on 20 July 2012

Getting in the loop: new insights into the mechanism of poly(A) site recognition.

scientific article published in March 2011

Getting the message out.

scientific article published on July 2008

Global analysis of trans-splicing in Drosophila.

scientific article

Global patterns of tissue-specific alternative polyadenylation in Drosophila

scientific article

Identification of alternative splicing regulators by RNA interference in Drosophila

scholarly article

Identification of neoblast- and regeneration-specific miRNAs in the planarian Schmidtea mediterranea.

scientific article published on 23 August 2013

Massive expansions of Dscam splicing diversity via staggered homologous recombination during arthropod evolution

scientific article

MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology

scientific article published on 18 July 2006

Molecular Mechanisms and Evolutionary Processes Contributing to Accelerated Divergence of Gene Expression on the Drosophila X Chromosome

scientific article

Molecular biology: power sequencing.

scientific article published in June 2008

Musings on 20 years of RNA.

scientific article published on April 2015

Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures

scientific article published on October 2005

New insights from existing sequence data: generating breakthroughs without a pipette

scientific article

Probabilistic splicing of Dscam1 establishes identity at the level of single neurons.

scientific article

RNA structure and the mechanisms of alternative splicing.

scientific article

RS domains contact the pre-mRNA throughout spliceosome assembly

scientific article

Regulation of alternative splicing in Drosophila by 56 RNA binding proteins

scientific article

Regulatory divergence in Drosophila revealed by mRNA-seq.

scientific article

Restoration of both structure and function to a defective poly(A) site by in vitro selection

scientific article published in December 1996

Sex, AGility, and the regulation of alternative splicing

scientific article (publication date: 17 May 2002)

Sixty years of genome biology

scientific article published on 25 April 2013

Small molecule control of pre-mRNA splicing

scientific article published on 20 January 2005

Sorting out the complexity of SR protein functions

scientific article

Splicing bioinformatics to biology

scientific article published on 26 May 2006

Splicing from the outside in.

scientific article

Splicing up pluripotency.

scientific article published in September 2011

Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing

scientific article

TFIIS binds to mouse RNA polymerase I and stimulates transcript elongation and hydrolytic cleavage of nascent rRNA

scientific article published on 01 September 1996

Tempo and mode of regulatory evolution in Drosophila

scientific article

The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians.

scientific article published on 2 May 2008

The genome of Anopheles darlingi, the main neotropical malaria vector

scientific article published on 12 June 2013

The iStem, a long-range RNA secondary structure element required for efficient exon inclusion in the Drosophila Dscam pre-mRNA.

scientific article

The majority of transcripts in the squid nervous system are extensively recoded by A-to-I RNA editing

scientific article

The role of U2AF35 and U2AF65 in enhancer-dependent splicing

scientific article

The three major types of CRISPR-Cas systems function independently in CRISPR RNA biogenesis in Streptococcus thermophilus

scientific article published on 4 June 2014

The transcriptional diversity of 25 Drosophila cell lines

scientific article

Three CRISPR-Cas immune effector complexes coexist in Pyrococcus furiosus.

scientific article published on 22 April 2015

Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea

scientific article (publication date: 2012)

Use of RNA interference to dissect the roles of trans-acting factors in alternative pre-mRNA splicing

scientific article

Vex-seq: high-throughput identification of the impact of genetic variation on pre-mRNA splicing efficiency.

scientific article published in June 2018

microRNA-Seq reveals cocaine-regulated expression of striatal microRNAs

scientific article

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