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List of works by Nicole Stoesser

A Large, Refractory Nosocomial Outbreak of Klebsiella pneumoniae Carbapenemase-Producing Escherichia coli Demonstrates Carbapenemase Gene Outbreaks Involving Sink Sites Require Novel Approaches to Infection Control

scientific article published on 26 November 2018

A Role for Tetracycline Selection in Recent Evolution of Agriculture-Associated PCR Ribotype 078

scientific article published on 12 March 2019

A curated dataset of complete Enterobacteriaceae plasmids compiled from the NCBI nucleotide database.

scientific article

A role for tetracycline selection in the evolution ofClostridium difficilePCR-ribotype 078

Antibody Status and Incidence of SARS-CoV-2 Infection in Health Care Workers

scientific article published on 23 December 2020

Bayesian reconstruction of transmission within outbreaks using genomic variants

scientific article published on 18 April 2018

Changing Patterns of Gastrointestinal Parasite Infections in Cambodian Children: 2006-2011 ⬇️

scientific article published on June 21, 2012

Characteristics of CTX-M ESBL-producing Escherichia coli isolates from the Lao People's Democratic Republic, 2004-09 ⬇️

scientific article published on October 10, 2011

Characterization of a Novel IncHI2 Plasmid Carrying Tandem Copies of blaCTX-M-2 in a fosA6-Harboring Escherichia coli Sequence Type 410 Strain

scientific article published on 29 August 2016

Chromosomal Integration of the Klebsiella pneumoniae Carbapenemase Gene, blaKPC, in Klebsiella Species Is Elusive but Not Rare

scientific article

Clinical Clostridium difficile: clonality and pathogenicity locus diversity

scientific article

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

scientific article published on 30 August 2019

Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193.

scientific article

Complete Sequencing of Plasmids Containing blaOXA-163 and blaOXA-48 in Escherichia coli Sequence Type 131.

scientific article published on 06 September 2016

Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission. ⬇️

scientific article published on 7 August 2017

Differential occupational risks to healthcare workers from SARS-CoV-2 observed during a prospective observational study

scientific article published on 21 August 2020

Effects of control interventions on Clostridium difficile infection in England: an observational study ⬇️

scientific article published on 24 January 2017

Enhanced Klebsiella pneumoniae Carbapenemase Expression from a Novel Tn4401 Deletion

scientific article

Epidemiology of Clostridium difficile in infants in Oxfordshire, UK: Risk factors for colonization and carriage, and genetic overlap with regional C. difficile infection strains ⬇️

scientific article published on 16 August 2017

Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia

scientific article published on 16 August 2017

Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131

scientific article published on 22 March 2016

Evolutionary history of the Clostridium difficile pathogenicity locus ⬇️

scientific article

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131

scholarly article published 6 November 2015

Fidaxomicin versus vancomycin for Clostridium difficile infection: meta-analysis of pivotal randomized controlled trials.

scientific article

First Report of blaIMP-14 on a Plasmid Harboring Multiple Drug Resistance Genes in Escherichia coli Sequence Type 131.

scientific article published on 31 May 2016

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism-calling pipelines

scientific article published on 01 February 2020

Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing E. coli

Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli.

scientific article

Genomic network analysis of environmental and livestock F-type plasmid populations

scientific article published on 01 March 2021

Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients

scientific article published on 18 June 2020

High rates of human fecal carriage of mcr-1-positive multi-drug resistant Enterobacteriaceae isolates emerge in China in association with successful plasmid families.

scientific article published on 10 October 2017

Identification of Biomarkers for Differentiation of Hypervirulent Klebsiella pneumoniae from Classical K. pneumoniae ⬇️

scientific article published on 27 August 2018

Identifying lineage effects when controlling for population structure improves power in bacterial association studies

scientific article published on 04 April 2016

IncX2 and IncX1-X2 Hybrid Plasmids Coexisting in a FosA6-Producing Escherichia coli Strain.

scientific article published on 24 April 2017

Increasing incidence of Escherichia coli bacteraemia is driven by an increase in antibiotic-resistant isolates: electronic database study in Oxfordshire 1999-2011.

scientific article published on 21 March 2012

Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing

scientific article

Klebsiella quasipneumoniae Provides a Window into Carbapenemase Gene Transfer, Plasmid Rearrangements, and Patient Interactions with the Hospital Environment.

scientific article published on 24 May 2019

Molecular epidemiology and antimicrobial resistance phenotype of paediatric bloodstream infections caused by Gram-negative bacteria

scientific article published in 2022

Molecular epidemiology of Clostridium difficile strains in children compared with that of strains circulating in adults with Clostridium difficile-associated infection

scientific article published on 21 September 2011

Mortality risks associated with emergency admissions during weekends and public holidays: an analysis of electronic health records

scientific article

Mortality risks associated with empirical antibiotic activity in <i>Escherichia coli</i> bacteraemia: an analysis of electronic health records

scientific article published in 2022

Multilocus sequence typing of Clostridium difficile

scientific article

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC

scientific article published on 11 April 2016

Nested Russian Doll-like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance GeneblaKPC

article

Optimized use of Oxford Nanopore flowcells for hybrid assemblies

scientific article published on 11 November 2020

Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids

scientific article published on 9 March 2017

Paediatric Chromobacterium violaceum in Cambodia: the first documented case ⬇️

scientific article published on 01 July 2012

Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology

scientific article published on 09 February 2017

Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli

scientific article published on 23 March 2020

Reconciling the potentially irreconcilable? Genotypic and phenotypic amoxicillin-clavulanate resistance in Escherichia coli : Supplementary Materials

scholarly article published 7 January 2019

Risk Factors for Clostridium difficile Acquisition in Infants: Importance of Study Design

scientific article published on 26 February 2013

Risk factors associated with carbapenemase-producing Enterobacterales (CPE) positivity in the hospital wastewater environment

scientific article published on 11 September 2020

SARS-CoV-2 antibody prevalence, titres and neutralising activity in an antenatal cohort, United Kingdom, 14 April to 15 June 2020

scientific article published on 01 October 2020

Separate F-Type Plasmids Have Shaped the Evolution of the H30 Subclone of Escherichia coli Sequence Type 131.

scientific article published on 29 June 2016

Severity of illness and the weekend effect - Authors' reply

scientific article published on 12 October 2017

TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

scientific article published on 23 March 2018

TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data

article

Ten years of population-level genomic Escherichia coli and Klebsiella pneumoniae serotype surveillance informs vaccine development for invasive infections

scientific article published on 07 January 2021

Ten-year longitudinal molecular epidemiology study of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire, UK

scientific article published on 03 September 2021

The Hospital Water Environment as a Reservoir for Carbapenem-Resistant Organisms Causing Hospital-Acquired Infections-A Systematic Review of the Literature

scientific article

The Role of fosA in Challenges with Fosfomycin Susceptibility Testing of Multispecies Klebsiella pneumoniae Carbapenemase-Producing Clinical Isolates

scientific article published on 24 September 2019

The duration, dynamics and determinants of SARS-CoV-2 antibody responses in individual healthcare workers

scientific article published on 06 January 2021

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

scientific article published on 24 October 2019

The value of intermittent point-prevalence surveys of healthcare-associated infections for evaluating infection control interventions at Angkor Hospital for Children, Siem Reap, Cambodia ⬇️

scientific article published on February 14, 2013

Trends over time in Escherichia coli bloodstream infections, urinary tract infections, and antibiotic susceptibilities in Oxfordshire, UK, 1998-2016: a study of electronic health records

scientific article published on 17 August 2018

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