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List of works by Valmir Carneiro Barbosa

A graph model for the evolution of specificity in humoral immunity

scientific article published on 01 August 2004

A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom

scientific article

A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics

scientific article published on 26 April 2019

A scoring model for phosphopeptide site localization and its impact on the question of whether to use MSA.

scientific article published on 23 January 2015

A string-matching algorithm for the CREW PRAM

Analyzing marginal cases in differential shotgun proteomics ⬇️

scientific article published on November 11, 2010

Analyzing shotgun proteomic data with PatternLab for proteomics

scientific article

Are Gastric Cancer Resection Margin Proteomic Profiles More Similar to Those from Controls or Tumors? ⬇️

scientific article published on November 13, 2012

Can the false-discovery rate be misleading?

scientific article published on 6 September 2011

Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins.

scientific article published in February 2018

Charge prediction machine: tool for inferring precursor charge states of electron transfer dissociation tandem mass spectra

scientific article published on March 2009

Descents and nodal load in scale-free networks

scientific article published on 17 April 2008

DiagnoProt: a tool for discovery of new molecules by mass spectrometry

scientific article

Differential proteomic comparison of breast cancer secretome using a quantitative paired analysis workflow

scientific article published on 18 April 2019

Dissemination strategy for immunizing scale-free networks

scientific article published on 06 November 2006

Dynamic proteomic overview of glioblastoma cells (A172) exposed to perillyl alcohol

scientific article

Early appraisal of the fixation probability in directed networks ⬇️

scientific article published on October 22, 2010

Early detection of epilepsy seizures based on a weightless neural network.

scientific article published on August 2015

Effectively addressing complex proteomic search spaces with peptide spectrum matching

scientific article published on 27 February 2013

Emergence of scale-free networks from local connectivity and communication trade-offs.

scientific article

Exploring the proteomic landscape of a gastric cancer biopsy with the shotgun imaging analyzer

scientific article

GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data

scientific article

Improving the TFold test for differential shotgun proteomics ⬇️

scientific article published on April 26, 2012

Information Integration from Distributed Threshold-Based Interactions ⬇️

Information-theoretic signatures of biodiversity in the barcoding gene

scientific article published on 08 May 2018

Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0.

scientific article

Learning in the combinatorial neural model

scientific article published in January 1998

Mixed-data acquisition: Next-generation quantitative proteomics data acquisition

scientific article published on 05 May 2020

Network algorithmics and the emergence of information integration in cortical models ⬇️

scientific article published on July 8, 2011

Network algorithmics and the emergence of the cortical synaptic-weight distribution

scientific article

Network conduciveness with application to the graph-coloring and independent-set optimization transitions

scientific article

Network growth for enhanced natural selection

scientific article published on 14 August 2009

On best practices in the development of bioinformatics software

scientific article published on 2 July 2014

PatternLab for proteomics: a tool for differential shotgun proteomics

scientific article

PatternLab: From Mass Spectra to Label‐Free Differential Shotgun Proteomics ⬇️

scientific article published on 01 December 2012

PepExplorer: a similarity-driven tool for analyzing de novo sequencing results

scientific article published on 30 May 2014

Quasispecies dynamics with network constraints

scientific article published on 09 August 2012

SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis

scientific article

Search engine processor: Filtering and organizing peptide spectrum matches

scientific article published in April 2012

The conduciveness of CA-rule graphs

scientific article published on 20 March 2013

Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectra

scientific article published on 01 September 2019

Using PepExplorer to Filter and Organize De Novo Peptide Sequencing Results

scientific article published on 3 September 2015

V-like Formations in Flocks of Artificial Birds

XDIA: improving on the label-free data-independent analysis

scientific article

YADA: a tool for taking the most out of high-resolution spectra.

scientific article

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