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List of works by Ramiro Logares

A data mining approach to dinoflagellate clustering according to sterol composition: correlations with evolutionary history

scientific article

A ubiquitous gammaproteobacterial clade dominates expression of sulfur oxidation genes across the mesopelagic ocean

scientific article published on 24 April 2023

Abundant and rare picoeukaryotic sub-communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean

scientific article published on 21 November 2016

Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells.

scientific article published on 27 January 2017

Assessing the viral content of uncultured picoeukaryotes in the global-ocean by single cell genomics

scientific article published on 24 September 2019

Benthic protists: the under-charted majority

scientific article

Biogeography of bacterial communities exposed to progressive long-term environmental change

scientific article

Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes

article by Ramiro Logares et al published 4 May 2018 in Environmental Microbiology

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

scientific article

Delineating closely related dinoflagellate lineages using phylotranscriptomics

scientific article published on 13 June 2018

Diatom diversity through HTS-metabarcoding in coastal European seas

scientific article published in Scientific Reports

Different processes shape prokaryotic and picoeukaryotic assemblages in the sunlit ocean microbiome

Diversity of eukaryotic and prokaryotic microbiota revealed by metabarcoding in Neotropical floodplain lakes

scientific article published in 2023

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

scientific article

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria

scientific article

Ecological and evolutionary significance of novel protist lineages

scientific article

Environmental Sequencing Provides Reasonable Estimates of the Relative Abundance of Specific Picoeukaryotes

scientific article published on 27 May 2016

Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches

scientific article published on 28 July 2012

Eukaryotic versus prokaryotic marine picoplankton ecology ⬇️

scientific article published on 04 December 2012

Evidence of concurrent local adaptation and high phenotypic plasticity in a polar microeukaryote

scientific article published on 3 September 2014

Exploring the oceanic microeukaryotic interactome with metaomics approaches

scientific article published in 2017

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

scientific article

Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA.

scientific article

General Patterns of Diversity in Major Marine Microeukaryote Lineages ⬇️

scientific article published on February 21, 2013

Genetic diversity patterns in five protist species occurring in lakes

scientific article published on 21 January 2009

Global beta diversity patterns of microbial communities in the surface and deep ocean

scientific article published in 2022

Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean

scientific article published on 29 April 2019

Impact of grazing, resource availability and light on prokaryotic growth and diversity in the oligotrophic surface global ocean

scientific article published on 20 March 2019

Important contribution of macroalgae to oceanic carbon sequestration

scientific article published on 05 August 2019

Infrequent marine-freshwater transitions in the microbial world.

scientific article published on 31 August 2009

Infrequent transitions between saline and fresh waters in one of the most abundant microbial lineages (SAR11).

scientific article published on 6 October 2009

Large variability of bathypelagic microbial eukaryotic communities across the world's oceans.

scientific article published on 9 October 2015

Large-scale ocean connectivity and planktonic body size

scientific article published on 10 January 2018

Long-term patterns of an interconnected core marine microbiota

scientific article published on 07 May 2022

Low evolutionary diversification in a widespread and abundant uncultured protist (MAST-4).

scientific article published on 13 December 2011

MARINE-DERIVED DINOFLAGELLATES IN ANTARCTIC SALINE LAKES: COMMUNITY COMPOSITION AND ANNUAL DYNAMICS(1) *[link].

scientific article

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

scientific article published on 28 June 2015

Marked changes in diversity and relative activity of picoeukaryotes with depth in the world ocean ⬇️

scientific article published on 23 October 2019

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

scientific article published on 18 September 2013

Mixing of water masses caused by a drifting iceberg affects bacterial activity, community composition and substrate utilization capability in the Southern Ocean

scientific article published on 21 April 2017

Niche adaptation promoted the evolutionary diversification of tiny ocean predators

scientific article published in 2021

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

scientific article published on May 2015

Patterns of rare and abundant marine microbial eukaryotes

scientific article

Phenotypically different microalgal morphospecies with identical ribosomal DNA: a case of rapid adaptive evolution?

scientific article published on 5 April 2007

Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf

scientific article

Planktonic protistan communities in lakes along a large-scale environmental gradient

scientific article published on 7 November 2016

Polar lakes may act as ecological islands to aquatic protists

scientific article published on 7 May 2012

Primer Design for an Accurate View of Picocyanobacterial Community Structure by Using High-Throughput Sequencing

scientific article published on 22 March 2019

Probing the Rare Biosphere of the North-West Mediterranean Sea: An Experiment with High Sequencing Effort

scientific article

Protist Diversity and Seasonal Dynamics in Skagerrak Plankton Communities as Revealed by Metabarcoding and Microscopy

scientific article published on 29 November 2018

Quantifying long-term recurrence in planktonic microbial eukaryotes

scientific article published on 04 February 2019

Rarity in aquatic microbes: placing protists on the map.

scientific article published on 24 October 2015

Recent advances in environmental DNA‐based biodiversity assessment and conservation

scientific article published in 2021

Recent evolutionary diversification of a protist lineage

scientific article published on 18 February 2008

Restructuring of the sponge microbiome favors tolerance to ocean acidification.

scientific article

Role of Bacterial Community Composition as a Driver of the Small-Sized Phytoplankton Community Structure in a Productive Coastal System

scientific article published in 2022

Seasonal niche differentiation among closely related marine bacteria

scientific article published on 20 July 2021

Seasonal patterns in Arctic prasinophytes and inferred ecology of Bathycoccus unveiled in an Arctic winter metagenome

scientific article

Seasonal succession of small planktonic eukaryotes inhabiting surface waters of a coastal upwelling system

scientific article published on 01 August 2018

Single Cell Genomics Reveals Viruses Consumed by Marine Protists

scientific article published on 24 September 2020

Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems

scientific article published on 15 April 2019

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

scientific article published on 22 January 2018

Sinking particles promote vertical connectivity in the ocean microbiome

article published in the Proceedings of the National Academy of Sciences of the United States of America

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy

scientific article

The planktonic protist interactome: where do we stand after a century of research?

scientific article published on 04 November 2019

Tracing the Origin of Planktonic Protists in an Ancient Lake

scientific article published on 09 April 2020

Uncovering the genomic potential of the Amazon River microbiome to degrade rainforest organic matter

scientific article published on 30 October 2020

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

scientific article

Weak Coherence in Abundance Patterns Between Bacterial Classes and Their Constituent OTUs Along a Regulated River

scientific article

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