List of works - Antonio Rosato

1H and13C NMR Studies of an Oxidized HiPIP

scientific article published on 01 October 1997

A NMR study of the interaction of a three-domain construct of ATP7A with copper(I) and copper(I)-HAH1: the interplay of domains

scientific article published on 19 September 2005

A Simple Protocol for the Comparative Analysis of the Structure and Occurrence of Biochemical Pathways Across Superkingdoms

article

A further investigation of the cytochrome b5-cytochrome c complex

scientific article published on 19 July 2003

A hint to search for metalloproteins in gene banks

scientific article published on 12 February 2004

A protocol for the refinement of NMR structures using simultaneously pseudocontact shift restraints from multiple lanthanide ions

scientific article

A structural model for the adduct between cytochrome c and cytochrome c oxidase

article

A systematic investigation of multiheme c-type cytochromes in prokaryotes

scientific article published on 19 January 2010

An Italian contribution to structural genomics: Understanding metalloproteins

article

An NMR study of the interaction of the N-terminal cytoplasmic tail of the Wilson disease protein with copper(I)-HAH1.

scientific article published on 30 January 2009

An atomic-level investigation of the disease-causing A629P mutant of the Menkes protein, ATP7A.

scientific article published in September 2005

An atomistic view of the YiiP structural changes upon zinc(II) binding

scientific article published on 06 June 2019

Analysis of the structural quality of the CASD-NMR 2013 entries.

scientific article

Automated protein structure determination by NMR

scientific article published on 01 August 2015

Backbone Dynamics of Human Cu,Zn Superoxide Dismutase and of Its Monomeric F50E/G51E/E133Q Mutant: The Influence of Dimerization on Mobility and Function†

article

Bioinformatic comparison of structures and homology-models of matrix metalloproteinases

scientific article published in January 2004

Blind testing of routine, fully automated determination of protein structures from NMR data

scientific article

Browsing gene banks for Fe2S2 ferredoxins and structural modeling of 88 plant-type sequences: An analysis of fold and function

article

CASD-NMR: critical assessment of automated structure determination by NMR

scientific article

Can the axial ligand strength be monitored through spectroscopic measurements?

article published in 1996

Comparative Analysis of the ADAM and ADAMTS Families

article

Copper(I)-mediated protein-protein interactions result from suboptimal interaction surfaces

scientific article

Counting the zinc-proteins encoded in the human genome

scientific article

Evolution of mitochondrial-type cytochrome c domains and of the protein machinery for their assembly

scientific article

Exploiting Bacterial Operons To Illuminate Human Iron-Sulfur Proteins

scientific article published on 18 February 2016

From correlation to causation: analysis of metabolomics data using systems biology approaches.

scientific article published on 27 February 2018

Genome-based analysis of heme biosynthesis and uptake in prokaryotic systems

scientific article published on 23 September 2008

Hidden relationships between metalloproteins unveiled by structural comparison of their metal sites

scientific article published on 30 March 2015

Hydrogen exchange in a bacterial cytochrome c: a fingerprint of the cytochrome c fold

scientific article published in September 2003

Insights into telomeric G-quadruplex DNA recognition by HMGB1 protein

scientific article published on 01 October 2019

Investigation of the Iron(II) Release Mechanism of Human H-Ferritin as a Function of pH.

scientific article published on 30 August 2017

Learning to Identify Physiological and Adventitious Metal-Binding Sites in the Three-Dimensional Structures of Proteins by Following the Hints of a Deep Neural Network

scientific article published in 2022

Magnetic susceptibility tensor anisotropies for a lanthanide ion series in a fixed protein matrix

scientific article published in May 2001

MaxOcc: a web portal for maximum occurrence analysis

scientific article published on 26 May 2012

Menkes disease

scientific article published on 01 January 2008

MetalPDB: a database of metal sites in biological macromolecular structures

scientific article published on 15 November 2012

MetalS(3), a database-mining tool for the identification of structurally similar metal sites.

scientific article published on 4 April 2014

MetalS2: a tool for the structural alignment of minimal functional sites in metal-binding proteins and nucleic acids.

scientific article

Metalloproteomes: a bioinformatic approach.

scientific article published on October 2009

Minimal Functional Sites in Metalloproteins and Their Usage in Structural Bioinformatics

scientific article

Mitochondrial cytochromes c: a comparative analysis

article

NMR solution structure, backbone mobility, and homology modeling of c-type cytochromes from gram-positive bacteria

scientific article

Non-heme iron through the three domains of life

scientific article published on 01 May 2007

Occurrence of copper proteins through the three domains of life: a bioinformatic approach

scientific article published on 8 November 2007

Paramagnetic relaxation as a tool for solution structure determination: Clostridium pasteurianum ferredoxin as an example.

scientific article published in November 1997

Paramagnetically Induced Residual Dipolar Couplings for Solution Structure Determination of Lanthanide Binding Proteins

scientific article published on 01 May 2002

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

scholarly article by Kristian Peters et al published 7 December 2018 in GigaScience

Predicting zinc binding at the proteome level

scientific article

Principles and patterns in the interaction between mono-heme cytochrome c and its partners in electron transfer processes

scientific article published on 01 March 2011

Protein structure prediction assisted with sparse NMR data in CASP13

scientific article published on 01 December 2019

Quality assessment of protein NMR structures.

scientific article

Role of the N-Terminal Tail of Metal-Transporting P1B-type ATPases from Genome-Wide Analysis and Molecular Dynamics Simulations

article

SPINE bioinformatics and data-management aspects of high-throughput structural biology

scientific article

SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

scientific article published on 17 November 2013

Solution structure and intermolecular interactions of the third metal-binding domain of ATP7A, the Menkes disease protein.

scientific article

Solution structure calculations through self-orientation in a magnetic field of a cerium(III) substituted calcium-binding protein.

scientific article published in January 2001

Solution structure of a monoheme ferrocytochrome c from Shewanella putrefaciens and structural analysis of sequence-similar proteins: functional implications

scientific article

Solution structure of oxidized horse heart cytochrome c

scientific article

Solution structure of paramagnetic metalloproteins

Solution structure of the oxidized Fe7S8 ferredoxin from the thermophilic bacterium Bacillus schlegelii by 1H NMR spectroscopy

scientific article

Structural and Dynamical Properties of a Partially Unfolded Fe4S4Protein: Role of the Cofactor in Protein Folding†

scientific article published on 01 April 1999

The Atx1-Ccc2 complex is a metal-mediated protein-protein interaction

The Binding Mode of ATP Revealed by the Solution Structure of the N-domain of Human ATP7A

scientific article

The Da Vinci European BioBank: A Metabolomics-Driven Infrastructure

scientific article published on 22 April 2015

The DisVis and PowerFit Web Servers: Explorative and Integrative Modeling of Biomolecular Complexes.

scientific article published on 6 December 2016

The Relationship between Environmental Dioxygen and Iron-Sulfur Proteins Explored at the Genome Level

scientific article

The Solution Structure Refinement of the Paramagnetic Reduced High-Potential Iron-Sulfur Protein I from Ectothiorhodospira Halophila by Using Stable Isotope Labeling and Nuclear Relaxation

scientific article published on 01 October 1996

The annotation of full zinc proteomes

scientific article published on 05 May 2010

The different intermolecular interactions of the soluble copper-binding domains of the menkes protein, ATP7A.

scientific article published on 2 June 2007

The functions of Sco proteins from genome-based analysis

scientific article published on 15 February 2007

The future of metabolomics in ELIXIR

scientific article published in 2017

The future of metabolomics in ELIXIR.

scientific article

The human iron-proteome

scientific article published on 01 September 2018

The second round of Critical Assessment of Automated Structure Determination of Proteins by NMR: CASD-NMR-2013.

scientific article

The solution structure of paramagnetic metalloproteins

scientific article published on January 1996

The unfolding of oxidized c-type cytochromes: the instructive case of Bacillus pasteurii

scientific article

The war of tools: how can NMR spectroscopists detect errors in their structures?

scientific article

To what extent do structural changes in catalytic metal sites affect enzyme function?

scientific article published on 8 November 2017

Upgraded AMBER Force Field for Zinc-Binding Residues and Ligands for Predicting Structural Properties and Binding Affinities in Zinc-Proteins

scientific article published on 16 June 2020

Upgrading and Validation of the AMBER Force Field for Histidine and Cysteine Zinc(II)-Binding Residues in Sites with Four Protein Ligands

scientific article published on 21 August 2019

WeNMR: Structural Biology on the Grid

scientific article published on 30 November 2012

West-Life: A Virtual Research Environment for structural biology

scientific article published on 01 January 2019

Zinc proteome interaction network as a model to identify nutrient-affected pathways in human pathologies

scientific article

Zinc through the three domains of life.

scientific article

nmrML: a community supported open data standard for the description, storage, and exchange of NMR data

scientific article published on 16 October 2017

List of works by Antonio Rosato

1H and13C NMR Studies of an Oxidized HiPIP

A NMR study of the interaction of a three-domain construct of ATP7A with copper(I) and copper(I)-HAH1: the interplay of domains

A Simple Protocol for the Comparative Analysis of the Structure and Occurrence of Biochemical Pathways Across Superkingdoms

A further investigation of the cytochrome b5-cytochrome c complex

A hint to search for metalloproteins in gene banks

A protocol for the refinement of NMR structures using simultaneously pseudocontact shift restraints from multiple lanthanide ions

A structural model for the adduct between cytochrome c and cytochrome c oxidase

A systematic investigation of multiheme c-type cytochromes in prokaryotes

An Italian contribution to structural genomics: Understanding metalloproteins

An NMR study of the interaction of the N-terminal cytoplasmic tail of the Wilson disease protein with copper(I)-HAH1.

An atomic-level investigation of the disease-causing A629P mutant of the Menkes protein, ATP7A.

An atomistic view of the YiiP structural changes upon zinc(II) binding

Analysis of the structural quality of the CASD-NMR 2013 entries.

Automated protein structure determination by NMR

Backbone Dynamics of Human Cu,Zn Superoxide Dismutase and of Its Monomeric F50E/G51E/E133Q Mutant: The Influence of Dimerization on Mobility and Function†

Bioinformatic comparison of structures and homology-models of matrix metalloproteinases

Blind testing of routine, fully automated determination of protein structures from NMR data

Browsing gene banks for Fe2S2 ferredoxins and structural modeling of 88 plant-type sequences: An analysis of fold and function

CASD-NMR: critical assessment of automated structure determination by NMR

Can the axial ligand strength be monitored through spectroscopic measurements?

Comparative Analysis of the ADAM and ADAMTS Families

Copper(I)-mediated protein-protein interactions result from suboptimal interaction surfaces

Counting the zinc-proteins encoded in the human genome

Evolution of mitochondrial-type cytochrome c domains and of the protein machinery for their assembly

Exploiting Bacterial Operons To Illuminate Human Iron-Sulfur Proteins

From correlation to causation: analysis of metabolomics data using systems biology approaches.

Genome-based analysis of heme biosynthesis and uptake in prokaryotic systems

Hidden relationships between metalloproteins unveiled by structural comparison of their metal sites

Hydrogen exchange in a bacterial cytochrome c: a fingerprint of the cytochrome c fold

Insights into telomeric G-quadruplex DNA recognition by HMGB1 protein

Investigation of the Iron(II) Release Mechanism of Human H-Ferritin as a Function of pH.

Learning to Identify Physiological and Adventitious Metal-Binding Sites in the Three-Dimensional Structures of Proteins by Following the Hints of a Deep Neural Network

Magnetic susceptibility tensor anisotropies for a lanthanide ion series in a fixed protein matrix

MaxOcc: a web portal for maximum occurrence analysis

Menkes disease

MetalPDB: a database of metal sites in biological macromolecular structures

MetalS(3), a database-mining tool for the identification of structurally similar metal sites.

MetalS2: a tool for the structural alignment of minimal functional sites in metal-binding proteins and nucleic acids.

Metalloproteomes: a bioinformatic approach.

Minimal Functional Sites in Metalloproteins and Their Usage in Structural Bioinformatics

Mitochondrial cytochromes c: a comparative analysis

NMR solution structure, backbone mobility, and homology modeling of c-type cytochromes from gram-positive bacteria

Non-heme iron through the three domains of life

Occurrence of copper proteins through the three domains of life: a bioinformatic approach

Paramagnetic relaxation as a tool for solution structure determination: Clostridium pasteurianum ferredoxin as an example.

Paramagnetically Induced Residual Dipolar Couplings for Solution Structure Determination of Lanthanide Binding Proteins

PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud

Predicting zinc binding at the proteome level

Principles and patterns in the interaction between mono-heme cytochrome c and its partners in electron transfer processes

Protein structure prediction assisted with sparse NMR data in CASP13

Quality assessment of protein NMR structures.

Role of the N-Terminal Tail of Metal-Transporting P1B-type ATPases from Genome-Wide Analysis and Molecular Dynamics Simulations

SPINE bioinformatics and data-management aspects of high-throughput structural biology

SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Solution structure and intermolecular interactions of the third metal-binding domain of ATP7A, the Menkes disease protein.

Solution structure calculations through self-orientation in a magnetic field of a cerium(III) substituted calcium-binding protein.

Solution structure of a monoheme ferrocytochrome c from Shewanella putrefaciens and structural analysis of sequence-similar proteins: functional implications

Solution structure of oxidized horse heart cytochrome c

Solution structure of paramagnetic metalloproteins

Solution structure of the oxidized Fe7S8 ferredoxin from the thermophilic bacterium Bacillus schlegelii by 1H NMR spectroscopy

Structural and Dynamical Properties of a Partially Unfolded Fe4S4Protein: Role of the Cofactor in Protein Folding†

The Atx1-Ccc2 complex is a metal-mediated protein-protein interaction

The Binding Mode of ATP Revealed by the Solution Structure of the N-domain of Human ATP7A

The Da Vinci European BioBank: A Metabolomics-Driven Infrastructure

The DisVis and PowerFit Web Servers: Explorative and Integrative Modeling of Biomolecular Complexes.

The Relationship between Environmental Dioxygen and Iron-Sulfur Proteins Explored at the Genome Level

The Solution Structure Refinement of the Paramagnetic Reduced High-Potential Iron-Sulfur Protein I from Ectothiorhodospira Halophila by Using Stable Isotope Labeling and Nuclear Relaxation

The annotation of full zinc proteomes

The different intermolecular interactions of the soluble copper-binding domains of the menkes protein, ATP7A.

The functions of Sco proteins from genome-based analysis

The future of metabolomics in ELIXIR

The future of metabolomics in ELIXIR.

The human iron-proteome

The second round of Critical Assessment of Automated Structure Determination of Proteins by NMR: CASD-NMR-2013.

The solution structure of paramagnetic metalloproteins

The unfolding of oxidized c-type cytochromes: the instructive case of Bacillus pasteurii

The war of tools: how can NMR spectroscopists detect errors in their structures?

To what extent do structural changes in catalytic metal sites affect enzyme function?

Upgraded AMBER Force Field for Zinc-Binding Residues and Ligands for Predicting Structural Properties and Binding Affinities in Zinc-Proteins