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List of works by Masami Yokota Hirai

12-oxo-phytodienoic acid-glutathione conjugate is transported into the vacuole in Arabidopsis.

scientific article

A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network

scientific article

A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis

scientific article published on 13 March 2009

A new class of plant lipid is essential for protection against phosphorus depletion

scientific article published on January 2013

A response regulator Rre37 and an RNA polymerase sigma factor SigE represent two parallel pathways to activate sugar catabolism in a cyanobacterium Synechocystis sp. PCC 6803.

scientific article

A robust omics-based approach for the identification of glucosinolate biosynthetic genes

article

A stress-inducible sulphotransferase sulphonates salicylic acid and confers pathogen resistance in Arabidopsis

scientific article published in April 2010

ACR11 is an Activator of Plastid-Type Glutamine Synthetase GS2 in Arabidopsis thaliana

scientific article published on 6 March 2017

ANGUSTIFOLIA3 signaling coordinates proliferation between clonally distinct cells in leaves.

scientific article published on 18 April 2013

Allosteric Inhibition of Phosphoenolpyruvate Carboxylases is Determined by a Single Amino Acid Residue in Cyanobacteria

scientific article published on 24 January 2017

Alteration of cyanobacterial sugar and amino acid metabolism by overexpression hik8, encoding a KaiC-associated histidine kinase.

scientific article published on 27 January 2015

Analysis of systemic sulfur metabolism in plants using integrated ‘-omics’ strategies

article

Anionic metabolite biosynthesis enhanced by potassium under dark, anaerobic conditions in cyanobacteria

scientific article published on 31 August 2016

Arabidopsis bile acid:sodium symporter family protein 5 is involved in methionine-derived glucosinolate biosynthesis

scientific article published on 24 July 2009

Arabidopsis molybdenum cofactor sulfurase ABA3 contributes to anthocyanin accumulation and oxidative stress tolerance in ABA-dependent and independent ways

scientific article published in Scientific Reports

Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches

scientific article

AtMetExpress development: a phytochemical atlas of Arabidopsis development ⬇️

article

Biochemical insight into redox regulation of plastidial 3-phosphoglycerate dehydrogenase from Arabidopsis thaliana

scientific article published on 25 August 2020

Capillary electrophoresis-mass spectrometry reveals the distribution of carbon metabolites during nitrogen starvation in Synechocystis sp. PCC 6803.

scientific article published on 25 June 2013

Changes in mRNA stability associated with cold stress in Arabidopsis cells.

scientific article

Changes in primary metabolism under light and dark conditions in response to overproduction of a response regulator RpaA in the unicellular cyanobacterium Synechocystis sp. PCC 6803.

scientific article published on 26 August 2015

Changes in trans-S-1-Propenyl-l-cysteine Sulfoxide and Related Sulfur-Containing Amino Acids during Onion Storage

scientific article published on 16 November 2016

Chemical Assignment of Structural Isomers of Sulfur-Containing Metabolites in Garlic by Liquid Chromatography-Fourier Transform Ion Cyclotron Resonance-Mass Spectrometry

scientific article

Co-ordinated Regulations of mRNA Synthesis and Decay during Cold Acclimation in Arabidopsis Cells

scientific article published on 21 April 2017

Combination of liquid chromatography-Fourier transform ion cyclotron resonance-mass spectrometry with 13C-labeling for chemical assignment of sulfur-containing metabolites in onion bulbs

scientific article

Comparative metabolomics charts the impact of genotype-dependent methionine accumulation in Arabidopsis thaliana.

scientific article published on 31 March 2010

Comprehensive Metabolite Profiling in Genetic Resources of Garlic (Allium sativum L.) Collected from Different Geographical Regions

scientific article published on 5 March 2021

Coordinated activation of metabolic pathways for antioxidants and defence compounds by jasmonates and their roles in stress tolerance in Arabidopsis

scientific article published in November 2005

Decoding genes with coexpression networks and metabolomics - 'majority report by precogs'.

scientific article published on 21 December 2007

Determination of growth stages and metabolic profiles in Brachypodium distachyon for comparison of developmental context with Triticeae crops.

scientific article published in July 2015

Differential regulation of host plant adaptive genes in Pieris butterflies exposed to a range of glucosinolate profiles in their host plants

scientific article published on 10 May 2019

Disarming the jasmonate-dependent plant defense makes nonhost Arabidopsis plants accessible to the American serpentine leafminer.

scientific article

Diversified amino acid-mediated allosteric regulation of phosphoglycerate dehydrogenase for serine biosynthesis in land plants

scientific article published on 01 June 2021

Drought Stress Responses in Context-Specific Genome-Scale Metabolic Models of Arabidopsis thaliana

scientific article published on 18 April 2020

Ectopic expression of myo-inositol 3-phosphate synthase induces a wide range of metabolic changes and confers salt tolerance in rice

scientific article published on 18 December 2014

Effects of Thiosulfate as a Sulfur Source on Plant Growth, Metabolites Accumulation and Gene Expression in Arabidopsis and Rice

scientific article published on 01 August 2019

Effects of molybdenum deficiency and defects in molybdate transporter MOT1 on transcript accumulation and nitrogen/sulphur metabolism in Arabidopsis thaliana

scientific article published on 03 December 2010

Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics

scientific article published on 2 May 2005

Engineering of cyanobacteria for the photosynthetic production of limonene from CO2.

scientific article published on 4 June 2014

Establishment of an in planta magnesium monitoring system using CAX3 promoter-luciferase in Arabidopsis

scientific article

Estimation of kinetic parameters in an S-system equation model for a metabolic reaction system using the Newton-Raphson method

scientific article published on 27 November 2013

Ethanol-Mediated Novel Survival Strategy against Drought Stress in Plants

scientific article published in 2022

Exogenous application of 5-aminolevulinic acid increases the transcript levels of sulfur transport and assimilatory genes, sulfate uptake, and cysteine and glutathione contents inArabidopsis thaliana

article

Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana

scientific article published on 24 August 2010

Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor

scientific article

Functional screening of salt tolerance genes from a halophyte Sporobolus virginicus and transcriptomic and metabolomic analysis of salt tolerant plants expressing glycine-rich RNA-binding protein

scientific article published on 29 October 2018

Genetic Variation for Seed Metabolite Levels in Brachypodium distachyon. ⬇️

scientific article published on 11 May 2019

Genetic engineering of group 2 sigma factor SigE widely activates expressions of sugar catabolic genes in Synechocystis species PCC 6803.

scientific article published on 11 July 2011

Genetic manipulation of a metabolic enzyme and a transcriptional regulator increasing succinate excretion from unicellular cyanobacterium

scientific article

Global expression profiling of sulfur-starved Arabidopsis by DNA macroarray reveals the role of O-acetyl-l-serine as a general regulator of gene expression in response to sulfur nutrition ⬇️

scientific article published in February 2003

Identification of a Unique Type of Isoflavone O-methyltransferase, GmIOMT1, based on Multi-omics Analysis of Soybean under Biotic Stress

scientific article published on 07 September 2020

Identification of a metabolic reaction network from time-series data of metabolite concentrations

scientific article

Increased bioplastic production with an RNA polymerase sigma factor SigE during nitrogen starvation in Synechocystis sp. PCC 6803.

scientific article published on 15 July 2013

Integrating transcriptome and target metabolome variability in doubled haploids of Allium cepa for abiotic stress protection

Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana

scholarly article

Interspecific Differences in the Larval Performance of Pieris Butterflies (Lepidoptera: Pieridae) Are Associated with Differences in the Glucosinolate Profiles of Host Plants

article

Investigation of kinetic-order sensitivities in metabolic reaction networks

scientific article published on 6 December 2016

Leaf Endoplasmic Reticulum Bodies Identified in Arabidopsis Rosette Leaves Are Involved in Defense against Herbivory

scientific article published on 29 January 2019

Mass spectra-based framework for automated structural elucidation of metabolome data to explore phytochemical diversity

scientific article

MassBank: a public repository for sharing mass spectral data for life sciences

scientific article (publication date: 7 July 2010)

Metabolic Control of Gametophore Shoot Formation through Arginine in the Moss Physcomitrium patens

scientific article published on 01 September 2020

Metabolome-Based Discrimination Analysis of Shallot Landraces and Bulb Onion Cultivars Associated with Differences in the Amino Acid and Flavonoid Profiles

scientific article published on 13 November 2020

Metabolome-based discrimination of chrysanthemum cultivars for the efficient generation of flower color variations in mutation breeding

scientific article published on 26 August 2019

Metabolomic analysis reveals rewiring ofSynechocystis sp. PCC 6803 primary metabolism byntcAoverexpression

scientific article published on 29 August 2014

Metabolomics-based analysis revealing the alteration of primary carbon metabolism by the genetic manipulation of a hydrogenase HoxH in Synechocystis sp. PCC 6803

Modification of photosynthetic electron transport and amino acid levels by overexpression of a circadian-related histidine kinase hik8 in Synechocystis sp. PCC 6803.

scientific article published on 20 October 2015

Molecular characterization of a novel quinolizidine alkaloid O-tigloyltransferase: cDNA cloning, catalytic activity of recombinant protein and expression analysis in Lupinus plants

scientific article published on 19 January 2005

Molecular regulation of assimilatory sulfur metabolism in plants

scientific article published in November 2003

Nicotinamide mononucleotide and related metabolites induce disease resistance against fungal phytopathogens in Arabidopsis and barley.

scientific article published on 25 July 2017

Novel Insights Into the Function of Arabidopsis R2R3-MYB Transcription Factors Regulating Aliphatic Glucosinolate Biosynthesis ⬇️

scientific article published on June 20, 2013

Novel bioresources for studies of Brassica oleracea: identification of a kale MYB transcription factor responsible for glucosinolate production

scientific article

Omics-based approaches to methionine side chain elongation in Arabidopsis: characterization of the genes encoding methylthioalkylmalate isomerase and methylthioalkylmalate dehydrogenase

scientific article published on 3 June 2009

Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis

scholarly article

One day of nitrogen starvation reveals the effect of sigE and rre37 overexpression on the expression of genes related to carbon and nitrogen metabolism in Synechocystis sp. PCC 6803.

scientific article published on 29 January 2015

Os-GIGANTEA confers robust diurnal rhythms on the global transcriptome of rice in the field

scientific article

PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation

scientific article

PRIMe: a Web site that assembles tools for metabolomics and transcriptomics.

scientific article published in January 2008

Pathway-level acceleration of glycogen catabolism by a response regulator in the cyanobacterium Synechocystis species PCC 6803.

scientific article published on 12 February 2014

Plant lipidomics based on hydrophilic interaction chromatography coupled to ion trap time-of-flight mass spectrometry

scientific article published on 31 May 2011

Pleiotropic effect of sigE over-expression on cell morphology, photosynthesis and hydrogen production in Synechocystis sp. PCC 6803.

scientific article published on 19 September 2013

Post-genomics approaches for the elucidation of plant adaptive mechanisms to sulphur deficiency

scientific article published on 18 June 2004

Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model

scientific article

Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes

article

Primary Metabolism during Biosynthesis of Secondary Wall Polymers of Protoxylem Vessel Elements

scientific article published on 6 September 2016

Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition.

scientific article published on 19 October 2006

RIKEN tandem mass spectral database (ReSpect) for phytochemicals: A plant-specific MS/MS-based data resource and database

scientific article (publication date: October 2012)

Regulation of Sugar and Storage Oil Metabolism by Phytochrome during De-etiolation

scientific article published on 20 November 2019

Retrograde sulfur flow from glucosinolates to cysteine in Arabidopsis thaliana

scientific article published in June 2021

Role of camalexin, indole glucosinolates, and side chain modification of glucosinolate-derived isothiocyanates in defense of Arabidopsis against Sclerotinia sclerotiorum

scientific article published on 27 April 2011

Rre37 stimulates accumulation of 2-oxoglutarate and glycogen under nitrogen starvation in Synechocystis sp. PCC 6803.

scientific article

SS-mPMG and SS-GA: tools for finding pathways and dynamic simulation of metabolic networks.

scientific article published on 9 April 2013

Seawater cultivation of freshwater cyanobacterium Synechocystis sp. PCC 6803 drastically alters amino acid composition and glycogen metabolism

scientific article

Succinate and Lactate Production from Euglena gracilis during Dark, Anaerobic Conditions

scientific article published on 21 December 2016

Syringic Acid Alleviates Cesium-Induced Growth Defect in <i>Arabidopsis</i>

scientific article published on 30 November 2020

The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access

scientific article

The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.

scientific article

The cytochrome P450 CYP77A4 is involved in auxin-mediated patterning of the Arabidopsis thaliana embryo

scientific article published on 12 September 2018

Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources

scientific article

Understanding Sugar Catabolism in Unicellular Cyanobacteria Toward the Application in Biofuel and Biomaterial Production

scientific article published on January 2016

Visualization of metabolite identifier information

WRKY6 is involved in the response to boron deficiency in Arabidopsis thaliana

scientific article published on 06 January 2010

Widely targeted metabolome and transcriptome landscapes of Allium fistulosum-A. cepa chromosome addition lines revealed a flavonoid hot spot on chromosome 5A

scientific article published on 05 March 2019

Widely targeted metabolomics and coexpression analysis as tools to identify genes involved in the side-chain elongation steps of aliphatic glucosinolate biosynthesis

scientific article published on 10 July 2010

Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants

scientific article

rre37 Overexpression alters gene expression related to the tricarboxylic acid cycle and pyruvate metabolism in Synechocystis sp. PCC 6803.

scientific article

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