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List of works by Matthew G. Johnson

A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life

scientific article published on 01 February 2022

A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta).

scientific article published on 23 January 2016

Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta).

scientific article

Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above

scientific article published on 17 July 2018

Differential gene expression associated with a floral scent polymorphism in the evening primrose Oenothera harringtonii (Onagraceae)

scientific article published on 12 February 2022

Evolution of niche preference in Sphagnum peat mosses

scientific article published on 16 December 2014

Exploring Angiosperms353: An open, community toolkit for collaborative phylogenomic research on flowering plants

scientific article

Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics

scientific article

HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment

scientific article published on 12 July 2016

Insights into mammalian TE diversity through the curation of 248 genome assemblies ⬇️

Interploidal hybridization and mating patterns in the Sphagnum subsecundum complex.

scientific article published in July 2011

Karyotypic diversity and cryptic speciation: Have we vastly underestimated moss species diversity?

scientific article

Local adaptations in bryophytes revisited: the genetic structure of the calcium-tolerant peatmoss Sphagnum warnstorfii along geographic and pH gradients

scientific article published on 19 December 2014

Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery

scientific article published on 13 July 2016

Morphologically cryptic biological species within the liverwort Frullania asagrayana

scientific article

On the potential of Angiosperms353 for population genomic studies

scientific article

Origins, genetic structure, and systematics of the narrow endemic peatmosses (Sphagnum): S. guwassanense and S. triseriporum (Sphagnaceae).

scientific article published on 29 May 2013

Phylogenomic delineation of Physcomitrium (Bryophyta: Funariaceae) based on targeted sequencing of nuclear exons and their flanking regions rejects the retention of Physcomitrella , Physcomitridium and Aphanorrhegma ⬇️

scientific article published in July 2019

Practical considerations for plant phylogenomics.

scientific article

Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes

scientific article published on 02 April 2019

Strategies for reducing per-sample costs in target capture sequencing for phylogenomics and population genomics in plants

scientific article published on 14 April 2020

Target enrichment and extensive population sampling help untangle the recent, rapid radiation of Oenothera sect. Calylophus

Target sequence capture of nuclear-encoded genes for phylogenetic analysis in ferns

scientific article published on 17 May 2018

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