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List of works by Gemma L. Holliday

A global analysis of function and conservation of catalytic residues in enzymes

scientific article published on 03 December 2019

A global view of structure-function relationships in the tautomerase superfamily.

scientific article published on 28 November 2017

Addressing sex bias in biological databases worldwide

Atlas of the Radical SAM Superfamily: Divergent Evolution of Function Using a “Plug and Play” Domain

scientific article published on 24 July 2018

Biocuration in the structure-function linkage database: the anatomy of a superfamily

scientific article

Biocuration in the structure-function linkage database: the anatomy of a superfamily.

scientific article

CMLSnap: Animated Reaction Mechanisms ⬇️

scientific article from 2004

Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis.

scientific article published on 13 June 2011

ChemInform Abstract: Evolution of Enzymes and Pathways for the Biosynthesis of Cofactors

Chemical Markup, XML, and the World Wide Web. 6. CMLReact, an XML Vocabulary for Chemical Reactions

scientific article

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

scientific article

EC-BLAST: a tool to automatically search and compare enzyme reactions

scientific article

Evaluating Functional Annotations of Enzymes Using the Gene Ontology

scientific article published on January 2017

Evolution of enzymes and pathways for the biosynthesis of cofactors

scientific article published on 12 September 2007

Exploring the biological and chemical complexity of the ligases

scientific article

Exploring the evolution of novel enzyme functions within structurally defined protein superfamilies

scientific article

First examples of M–Se–P–N–N heterocycles

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies

scientific article

InterPro in 2017-beyond protein family and domain annotations

scientific article

Key challenges for the creation and maintenance of specialist protein resources

scientific article

MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms

scientific article (publication date: 3 January 2007)

MACiE: a database of enzyme reaction mechanisms

scientific article (publication date: December 2005)

MACiE: exploring the diversity of biochemical reactions

scientific article

Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites

scientific article published on 2 November 2017

Metal ions in biological catalysis: from enzyme databases to general principles

scientific article published on 5 July 2008

Metal-MACiE: a database of metals involved in biological catalysis

scholarly article by Claudia Andreini et al published 15 April 2009 in Bioinformatics

Reaction Decoder Tool (RDT): extracting features from chemical reactions

scientific article (publication date: July 2016)

Small Molecule Subgraph Detector (SMSD) toolkit

scientific article

The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes

scientific article

The CoFactor database: organic cofactors in enzyme catalysis

scientific article

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

scientific article

The EBI enzyme portal

scientific article

The NAD Binding Domain and the Short-Chain Dehydrogenase/Reductase (SDR) Superfamily

The Structure-Function Linkage Database

scientific article

The chemistry of protein catalysis.

scientific article

The geometry of interactions between catalytic residues and their substrates

scientific article

The structures and physicochemical properties of organic cofactors in biocatalysis

scientific article published on 17 September 2010

Understanding the functional roles of amino acid residues in enzyme catalysis.

scientific article published on 15 May 2009

Using reaction mechanism to measure enzyme similarity.

scientific article published on 2 March 2007

[FeFe]-hydrogenase maturation: insights into the role HydE plays in dithiomethylamine biosynthesis

scientific article published on 2 March 2015

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