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List of works by Xabier Irigoien

A bacterial community-based index to assess the ecological status of estuarine and coastal environments

scientific article published on 23 October 2016

A quantitative assessment of Arctic shipping in 2010-2014.

scientific article

A real-time PCR assay to estimate invertebrate and fish predation on anchovy eggs in the Bay of Biscay

article

Acoustics reveals the presence of a macrozooplankton biocline in the Bay of Biscay in response to hydrological conditions and predator-prey relationships

scientific article

Aldehyde-induced insidious effects cannot be considered as a diatom defence mechanism against copepods

scientific article published in 2009

Anchovy population expansion in the North Sea

scientific article published in 2012

Are Calanus spp. shifting poleward in the North Atlantic? A habitat modelling approach

scientific article published in 2013

Assessment of Zooplankton Community Composition along a Depth Profile in the Central Red Sea.

scientific article published on 17 July 2015

Bacterial and protist community changes during a phytoplankton bloom

scientific article published on 15 October 2015

Benchmarking DNA Metabarcoding for Biodiversity-Based Monitoring and Assessment

scientific article published on 10 June 2016

Biomass changes and trophic amplification of plankton in a warmer ocean

scientific article

Born small, die young: Intrinsic, size-selective mortality in marine larval fish.

scientific article

Carbon stocks and accumulation rates in Red Sea seagrass meadows

scientific article published in Scientific Reports

Carotenoid metabolic profiling and transcriptome-genome mining reveal functional equivalence among blue-pigmented copepods and appendicularia

scientific article

Changes in plankton size structure and composition, during the generation of a phytoplankton bloom, in the central Cantabrian sea

article

Climate change impacts on coastal and pelagic environments in the southeastern Bay of Biscay

Climate impacts on albacore and bluefin tunas migrations phenology and spatial distribution

Climate oscillations reflected within the microbiome of Arabian Sea sediments.

scientific article published on 20 July 2017

Climate regime shifts and biodiversity redistribution in the Bay of Biscay

scientific article published in 2022

Comparative population structure, abundance and vertical distribution of six copepod species in the North Atlantic: Evidence for intraguild predation?

scientific article published in 2006

Composition, uniqueness and connectivity across tropical coastal lagoon habitats in the Red Sea

scientific article published on 23 November 2020

Consistent variability in beta-diversity patterns contrasts with changes in alpha-diversity along an onshore to offshore environmental gradient: the case of Red Sea soft-bottom macrobenthos

scientific article published on 30 September 2017

Copepod hatching success in marine ecosystems with high diatom concentrations

scientific article published in September 2002

Decadal stability of Red Sea mangroves

scholarly article by Hanan Almahasheer published in February 2016

Different measures of biodiversity (Reply)

scientific article published in January 2005

Dispersal similarly shapes both population genetics and community patterns in the marine realm

scientific article published on 27 June 2016

Dynamics of marine ecosystems: observation and experimentation

Earlier migration and distribution changes of albacore in the Northeast Atlantic

Effect of food composition on egg production and hatching success rate of two copepod species (Calanoides carinatus and Rhincalanus nasutus) in the Benguela upwelling system

scientific article published in 2005

Effects of Lugol's fixation on the size structure of natural nano-microplankton samples, analyzed by means of an automatic counting method

scientific article published in 2008

Euphausiid crustaceans in marine ecosystems: a contribution to the development of a new hypothesis about the role of depth on metabolic rates

scientific article published in 2013

Evaluating machine-learning techniques for recruitment forecasting of seven North East Atlantic fish species

scholarly article by Jose A. Fernandes et al published January 2015 in Ecological Informatics

Exploring the larval fish community of the central Red Sea with an integrated morphological and molecular approach

scientific article published on 3 August 2017

Extracellular DNA amplicon sequencing reveals high levels of benthic eukaryotic diversity in the central Red Sea.

scientific article published on 29 October 2015

Factors determining the distribution and betadiversity of mesozooplankton species in shelf and coastal waters of the Bay of Biscay

Fecundity limitation of Calanus helgolandicus, by the parasite Ellobiopsis sp

Feeding of Calanus finmarchicus and Oithona similis on the microplankton assemblage in the Irminger Sea, North Atlantic

scientific article published in 2008

Fine scale zooplankton distribution in the Bay of Biscay in spring 2004

Fish recruitment prediction, using robust supervised classification methods

scientific article published in 2010

Food from the ocean; towards a research agenda for sustainable use of our oceans’ natural resources

scientific article published in 2019

Functional differences in the allometry of the water, carbon and nitrogen content of gelatinous organisms

Genetic Diversity and Connectivity in Maurolicus muelleri in the Bay of Biscay Inferred from Thousands of SNP Markers.

scientific article published on 28 November 2017

Global beta diversity patterns of microbial communities in the surface and deep ocean

scientific article published in 2022

Global biodiversity patterns of marine phytoplankton and zooplankton

scientific article published in June 2004

Global habitat preferences of commercially valuable tuna

scholarly article by Haritz Arrizabalaga published in March 2015

Global patterns in mangrove soil carbon stocks and losses

scholarly article by Trisha B. Atwood et al published 26 June 2017 in Nature Climate Change

Global spatial risk assessment of sharks under the footprint of fisheries

scientific article published on 24 July 2019

High-Throughput Sequencing and Linkage Mapping of a Clownfish Genome Provide Insights on the Distribution of Molecular Players Involved in Sex Change.

scientific article published on 6 March 2018

Historical trends and future distribution of anchovy spawning in the Bay of Biscay

scholarly article by Maite Erauskin-Extramiana published in September 2018

How well does the Continuous Plankton Recorder (CPR) sample zooplankton? A comparison with the Longhurst Hardy Plankton Recorder (LHPR) in the northeast Atlantic

IN-SITU GRAZING ACTIVITY OF PLANKTONIC COPEPODS IN THE GIRONDE ESTUARY ⬇️

scientific article published in 1993

Identifying main interactions in marine predator–prey networks of the Bay of Biscay

scientific article published in 2019

Impact of suspended particulate matter on egg production of the estuarine copepod, Eurytemora affinis

scholarly article

Implementation of the European Marine Strategy Framework Directive: a methodological approach for the assessment of environmental status, from the Basque Country (Bay of Biscay).

scientific article published on 19 April 2011

Improving semiautomated zooplankton classification using an internal control and different imaging devices

scientific article published in 2012

Intraguild predation between small pelagic fish in the Bay of Biscay: impact on anchovy (Engraulis encrasicolus L.) egg mortality

scientific article published in 2015

Large deep-sea zooplankton biomass mirrors primary production in the global ocean

scientific article published on 27 November 2020

Large mesopelagic fishes biomass and trophic efficiency in the open ocean

scientific article

Large scale patterns in vertical distribution and behaviour of mesopelagic scattering layers.

scientific article

Large-scale ocean connectivity and planktonic body size

scientific article published on 10 January 2018

Latitudinal phytoplankton distribution and the neutral theory of biodiversity

scholarly article by Guillem Chust et al published 16 November 2012 in Global Ecology and Biogeography

Leaf Nutrient Resorption and Export Fluxes of Avicennia marina in the Central Red Sea Area

scientific article published on 13 June 2018

Light penetration structures the deep acoustic scattering layers in the global ocean.

scientific article

Low Carbon sink capacity of Red Sea mangroves.

scientific article

Macrozooplankton predation impact on anchovy (Engraulis encrasicolus) eggs mortality at the Bay of Biscay shelf break spawning centre

scientific article published in 2014

Marine microplankton diversity database

scientific article published on 11 July 2013

Marine water environmental DNA metabarcoding provides a comprehensive fish diversity assessment and reveals spatial patterns in a large oceanic area

scientific article published on 23 June 2020

Metabarcoding Reveals Seasonal and Temperature-Dependent Succession of Zooplankton Communities in the Red Sea

scientific article published on 2 August 2017

Microbial planktonic communities in the Red Sea: high levels of spatial and temporal variability shaped by nutrient availability and turbulence

scientific article published on 26 July 2017

Modelling growth of larval anchovies including diel feeding patterns, temperature and body size

scientific article published in 2008

Modelling the future biogeography of North Atlantic zooplankton communities in response to climate change

article

Modelling the influence of abiotic and biotic factors on plankton distribution in the Bay of Biscay, during three consecutive years (2004-06)

Multiple SNP markers reveal fine-scale population and deep phylogeographic structure in European anchovy (Engraulis encrasicolus L.).

scientific article

Nutrient Limitation in Central Red Sea Mangroves

scholarly article by Hanan Almahasheer et al published 22 December 2016 in Frontiers in Marine Science

Nycthemeral variations of the dissolved oxygen concentration in the turbidity maximum of three European estuaries: biological vs. physical processes ⬇️

scholarly article

On the absence of genetic differentiation between morphotypes of the ballan wrasse Labrus bergylta (Labridae)

scientific article published in 2016

Optimizing the number of classes in automated zooplankton classification

Pan-regional marine benthic cryptobiome biodiversity patterns revealed by metabarcoding Autonomous Reef Monitoring Structures

scientific article published on 15 October 2020

Permanent genetic resources added to Molecular Ecology Resources Database 1 October 2011-30 November 2011.

scientific article

Phenology and Growth dynamics of Avicennia marina in the Central Red Sea

scientific article

Phytoplankton blooms: a ‘loophole’ in microzooplankton grazing impact?

scholarly article by X. Irigoien et al published 1 April 2005 in Journal of Plankton Research

Phytoplankton pigment chemotaxonomy of the northeastern Atlantic ⬇️

scholarly article

Picocyanobacteria Community and Cyanophage Infection Responses to Nutrient Enrichment in a Mesocosms Experiment in Oligotrophic Waters

scientific article published on 03 June 2020

Plankton digital twins—a new research tool

scientific article published in 2022

Plankton: A Guide to Their Ecology and Monitoring for Water Quality 2nd edn ⬇️

scholarly article

Plastic accumulation in the Mediterranean sea.

scientific article

Plastic debris in the open ocean.

Scientific article, 2014

Please mind the gap - Visual census and cryptic biodiversity assessment at central Red Sea coral reefs

scientific article published on 26 April 2016

Population structure of Atlantic mackerel inferred from RAD-seq-derived SNP markers: effects of sequence clustering parameters and hierarchical SNP selection

scientific article

Predicting marine phytoplankton community size structure from empirical relationships with remotely sensed variables

scholarly article by Carolyn Barnes et al published 19 August 2010 in Journal of Plankton Research

Pushing the limits of photoreception in twilight conditions: The rod-like cone retina of the deep-sea pearlsides

scientific article published on 8 November 2017

RAD-seq derived genome-wide nuclear markers resolve the phylogeny of tunas.

scientific article published on 7 June 2016

Regional and temporal variation of Oithona spp. biomass, stage structure and productivity in the Irminger Sea, North Atlantic

scientific article published on 9 October 2007

Remobilization of Heavy Metals by Mangrove Leaves

scholarly article

Reply to Horizons Article ‘Castles built on sand: dysfunctionality in plankton models and the inadequacy of dialogue between biologists and modellers’ Flynn (2005). Shiny mathematical castles built on grey biological sands

scientific article published in 2006

Response of copepod communities to ocean warming in three time-series across the North Atlantic and Mediterranean Sea

scientific article published in 2020

Scaling of species distribution explains the vast potential marine prokaryote diversity

scientific article published on 10 December 2019

Scaling the metabolic balance of the oceans

scientific article

Seasonal variability and vertical distribution of autotrophic and heterotrophic picoplankton in the Central Red Sea

scientific article published on 24 February 2020

Selective feeding of Eurytemora affinis (Copepoda, Calanoida) in temperate estuaries: model and field observations

article published in 2003

Sequencing Effort Dictates Gene Discovery in Marine Microbial Metagenomes

scientific article published on 02 August 2020

Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis.

scientific article published on 17 October 2016

Spatial demography of Calanus finmarchicus in the Irminger Sea

scholarly article by M.R. Heath et al published January 2008 in Progress in Oceanography

Spring zooplankton distribution in the Bay of Biscay from 1998 to 2006 in relation with anchovy recruitment

article

Subseafloor Archaea reflect 139 kyrs of paleodepositional changes in the northern Red Sea

scientific article published on 03 December 2020

Supervised pre-processing approaches in multiple class variables classification for fish recruitment forecasting

article published in 2013

Target Strength and swimbladder morphology of Mueller's pearlside (Maurolicus muelleri)

scientific article published on 21 November 2019

The Arctic Ocean as a dead end for floating plastics in the North Atlantic branch of the Thermohaline Circulation

scientific article

The contribution of migratory mesopelagic fishes to neuston fish assemblages across the Atlantic, Indian and Pacific Oceans

scholarly article by M. Pilar Olivar published in January 2016

The effect of food on the determination of sex ratio in Calanus spp.: evidence from experimental studies and field data

article

The global network of ports supporting high seas fishing

scientific article

The oceans' twilight zone must be studied now, before it is too late

scientific article published on 01 April 2020

The potential use of a Gadget model to predict stock responses to climate change in combination with Bayesian networks: the case of Bay of Biscay anchovy

article

The role of intraguild predation in the population dynamics of small pelagic fish

scientific article published in 2011

Variation in the transfer of energy in marine plankton along a productivity gradient in the Atlantic Ocean

scientific article published on 01 July 2010

Zooplankton communities

Zooplankton communities and oceanographic structures in a high-resolution grid in the south-eastern corner of the Bay of Biscay

scientific article published in 2007

Zooplankton diversity across three Red Sea reefs using pyrosequencing

scientific article published on 30 July 2014

Comparative metagenomics of phytoplankton blooms after nutrient enrichment of oligotrophic marine waters

scientific article published in 2022

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