List of works - Eiji Nakata

A Diversity-Oriented Library of Fluorophore-Modified Receptors Constructed from a Chemical Library of Synthetic Fluorophores

scientific article

A chemical biosynthesis design for an antiatherosclerosis drug by acyclic tocopherol intermediate analogue based on "isoprenomics".

scientific article published in January 2009

A fluorescent lectin array using supramolecular hydrogel for simple detection and pattern profiling for various glycoconjugates

scientific article published on 01 August 2006

A modular zinc finger adaptor accelerates the covalent linkage of proteins at specific locations on DNA nanoscaffolds

scientific article published on 01 January 2015

A newly designed cell-permeable SNARF derivative as an effective intracellular pH indicator.

scientific article published on 8 April 2010

A peptide nucleic acid (PNA) heteroduplex probe containing an inosine-cytosine base pair discriminates a single-nucleotide difference in RNA.

scientific article published on 13 March 2013

A protein adaptor to locate a functional protein dimer on molecular switchboard

scientific article

Boron tracedrug: design, synthesis, and pharmacological activity of phenolic BODIPY-containing antioxidants as traceable next-generation drug model

scientific article published on 01 January 2012

Construction of a library of structurally diverse ribonucleopeptides with catalytic groups

scientific article

Construction of artificial signal transducers on a lectin surface by post-photoaffinity-labeling modification for fluorescent saccharide biosensors

scientific article published in August 2003

Construction of ratiometric fluorescent sensors by ribonucleopeptides.

scientific article

Coupling a natural receptor protein with an artificial receptor to afford a semisynthetic fluorescent biosensor.

scientific article

DNA Origami Scaffolds as Templates for Functional Tetrameric Kir3 K+ Channels.

scientific article published on 16 January 2018

DNA binding adaptors to assemble proteins of interest on DNA scaffold

scientific article published on 13 February 2019

Design of Modular Protein Tags for Orthogonal Covalent Bond Formation at Specific DNA Sequences.

scientific article published on 18 May 2017

Design of a hybrid biosensor for enhanced phosphopeptide recognition based on a phosphoprotein binding domain coupled with a fluorescent chemosensor

scientific article published on 19 April 2007

Design of antiangiogenic hypoxic cell radiosensitizers: 2-nitroimidazoles containing a 2-aminomethylene-4-cyclopentene-1,3-dione moiety

scientific article

Design of novel hypoxia-targeting IDO hybrid inhibitors conjugated with an unsubstituted L-TRP as an IDO affinity moiety

scientific article published in January 2010

Design, synthesis, and radiosensitizing activities of sugar-hybrid hypoxic cell radiosensitizers

scientific article published on 17 October 2007

Double-modification of lectin using two distinct chemistries for fluorescent ratiometric sensing and imaging saccharides in test tube or in cell.

scientific article

Facile conversion of RNA aptamers to modular fluorescent sensors with tunable detection wavelengths.

scientific article

Formation and regulation of fullerene-incorporation in liposomes under the phase transition temperature

scientific article published on 15 February 2011

Latent pH-responsive ratiometric fluorescent cluster based on self-assembled photoactivated SNARF derivatives

scientific article published on 2 August 2016

Luminescent saccharide biosensor by using lanthanide-bound lectin labeled with fluorescein.

scientific article

Medicinal electronomics bricolage design of hypoxia-targeting antineoplastic drugs and invention of boron tracedrugs as innovative future-architectural drugs

scientific article published on September 1, 2010

Nucleic-Acid-Templated Enzyme Cascades.

scientific article published on 2 February 2017

One-pot and sequential organic chemistry on an enzyme surface to tether a fluorescent probe at the proximity of the active site with restoring enzyme activity

scientific article

Phosphorylation regulates fibrillation of an aggregation core peptide in the second repeat of microtubule-binding domain of human tau.

scientific article published in November 2014

Positional effects of phosphorylation on the stability and morphology of tau-related amyloid fibrils

scientific article published on 7 February 2012

Prenylated acylphloroglucinol derivatives: isoprenomics-based design, syntheses and antioxidative activities

scientific article published on 01 January 2012

Protein adaptors assemble functional proteins on DNA scaffolds

scientific article published on 01 October 2019

Ratiometric fluorescence detection of a tag fused protein using the dual-emission artificial molecular probe

scientific article published on 17 August 2006

Ratiometric fluorescent biosensor for real-time and label-free monitoring of fine saccharide metabolic pathways

scientific article published in January 2008

Rational design of a DNA sequence-specific modular protein tag by tuning the alkylation kinetics

scientific article published on 20 August 2019

Recent progress in strategies for the creation of protein-based fluorescent biosensors

scientific article published in November 2009

Selective cross-linking of interacting proteins using self-labeling tags

scientific article published in December 2009

Semisynthetic fluorescent sensor proteins based on self-labeling protein tags.

scientific article published in April 2009

Simultaneous detection of ATP and GTP by covalently linked fluorescent ribonucleopeptide sensors.

scientific article

Spatially Organized Enzymes Drive Cofactor-Coupled Cascade Reactions

scientific article published on 29 February 2016

Synthesis and biological activity of 1-methyl-tryptophan-tirapazamine hybrids as hypoxia-targeting indoleamine 2,3-dioxygenase inhibitors

scientific article

Synthesis and photophysical properties of new SNARF derivatives as dual emission pH sensors

scientific article published on 27 January 2011

TX-2152: a conformationally rigid and electron-rich diyne analogue of FTY720 with in vivo antiangiogenic activity

scientific article

Target-specific chemical acylation of lectins by ligand-tethered DMAP catalysts.

scientific article published on 13 December 2007

The molecular mechanism of photochemical internalization of cell penetrating peptide-cargo-photosensitizer conjugates

scientific article

Ultrasound-dependent cytoplasmic internalization of a peptide-sonosensitizer conjugate

scientific article published on 15 June 2017

Zinc-finger proteins for site-specific protein positioning on DNA-origami structures

scientific article published on 27 January 2012

List of works by Eiji Nakata

A Diversity-Oriented Library of Fluorophore-Modified Receptors Constructed from a Chemical Library of Synthetic Fluorophores

A chemical biosynthesis design for an antiatherosclerosis drug by acyclic tocopherol intermediate analogue based on "isoprenomics".

A fluorescent lectin array using supramolecular hydrogel for simple detection and pattern profiling for various glycoconjugates

A modular zinc finger adaptor accelerates the covalent linkage of proteins at specific locations on DNA nanoscaffolds

A newly designed cell-permeable SNARF derivative as an effective intracellular pH indicator.

A peptide nucleic acid (PNA) heteroduplex probe containing an inosine-cytosine base pair discriminates a single-nucleotide difference in RNA.

A protein adaptor to locate a functional protein dimer on molecular switchboard

Boron tracedrug: design, synthesis, and pharmacological activity of phenolic BODIPY-containing antioxidants as traceable next-generation drug model

Construction of a library of structurally diverse ribonucleopeptides with catalytic groups

Construction of artificial signal transducers on a lectin surface by post-photoaffinity-labeling modification for fluorescent saccharide biosensors

Construction of ratiometric fluorescent sensors by ribonucleopeptides.

Coupling a natural receptor protein with an artificial receptor to afford a semisynthetic fluorescent biosensor.

DNA Origami Scaffolds as Templates for Functional Tetrameric Kir3 K+ Channels.

DNA binding adaptors to assemble proteins of interest on DNA scaffold

Design of Modular Protein Tags for Orthogonal Covalent Bond Formation at Specific DNA Sequences.

Design of a hybrid biosensor for enhanced phosphopeptide recognition based on a phosphoprotein binding domain coupled with a fluorescent chemosensor

Design of antiangiogenic hypoxic cell radiosensitizers: 2-nitroimidazoles containing a 2-aminomethylene-4-cyclopentene-1,3-dione moiety

Design of novel hypoxia-targeting IDO hybrid inhibitors conjugated with an unsubstituted L-TRP as an IDO affinity moiety

Design, synthesis, and radiosensitizing activities of sugar-hybrid hypoxic cell radiosensitizers

Double-modification of lectin using two distinct chemistries for fluorescent ratiometric sensing and imaging saccharides in test tube or in cell.

Facile conversion of RNA aptamers to modular fluorescent sensors with tunable detection wavelengths.

Formation and regulation of fullerene-incorporation in liposomes under the phase transition temperature

Latent pH-responsive ratiometric fluorescent cluster based on self-assembled photoactivated SNARF derivatives

Luminescent saccharide biosensor by using lanthanide-bound lectin labeled with fluorescein.

Medicinal electronomics bricolage design of hypoxia-targeting antineoplastic drugs and invention of boron tracedrugs as innovative future-architectural drugs

Nucleic-Acid-Templated Enzyme Cascades.

One-pot and sequential organic chemistry on an enzyme surface to tether a fluorescent probe at the proximity of the active site with restoring enzyme activity

Phosphorylation regulates fibrillation of an aggregation core peptide in the second repeat of microtubule-binding domain of human tau.

Positional effects of phosphorylation on the stability and morphology of tau-related amyloid fibrils

Prenylated acylphloroglucinol derivatives: isoprenomics-based design, syntheses and antioxidative activities

Protein adaptors assemble functional proteins on DNA scaffolds

Ratiometric fluorescence detection of a tag fused protein using the dual-emission artificial molecular probe

Ratiometric fluorescent biosensor for real-time and label-free monitoring of fine saccharide metabolic pathways

Rational design of a DNA sequence-specific modular protein tag by tuning the alkylation kinetics

Recent progress in strategies for the creation of protein-based fluorescent biosensors

Selective cross-linking of interacting proteins using self-labeling tags

Semisynthetic fluorescent sensor proteins based on self-labeling protein tags.

Simultaneous detection of ATP and GTP by covalently linked fluorescent ribonucleopeptide sensors.

Spatially Organized Enzymes Drive Cofactor-Coupled Cascade Reactions

Synthesis and biological activity of 1-methyl-tryptophan-tirapazamine hybrids as hypoxia-targeting indoleamine 2,3-dioxygenase inhibitors

Synthesis and photophysical properties of new SNARF derivatives as dual emission pH sensors

TX-2152: a conformationally rigid and electron-rich diyne analogue of FTY720 with in vivo antiangiogenic activity

Target-specific chemical acylation of lectins by ligand-tethered DMAP catalysts.

The molecular mechanism of photochemical internalization of cell penetrating peptide-cargo-photosensitizer conjugates

Ultrasound-dependent cytoplasmic internalization of a peptide-sonosensitizer conjugate

Zinc-finger proteins for site-specific protein positioning on DNA-origami structures