List of works - Anna Vangone

A recurrent Gly43Asp substitution in coagulation Factor X rigidifies its catalytic pocket and impairs catalytic activity and intracellular trafficking

scientific article published on 21 December 2013

Analysis of the interface variability in NMR structure ensembles of protein-protein complexes

scientific article published on 8 March 2016

COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes

CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions

scientific article

CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts

article

CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts

article published in 2014

Contacts-based prediction of binding affinity in protein-protein complexes

scientific article published on 20 July 2015

Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes.

scientific article published on 9 June 2016

Fragment-based modeling of membrane protein loops: successes, failures, and prospects for the future

scientific article

Large-scale prediction of binding affinity in protein–small ligand complexes: the PRODIGY-LIG web server

scientific article published on 01 May 2019

MDcons: Intermolecular contact maps as a tool to analyze the interface of protein complexes from molecular dynamics trajectories

scientific article

PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes

scientific article published on 01 November 2019

PRODIGY: a web server for predicting the binding affinity of protein-protein complexes

scientific article published on 8 August 2016

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

scientific article

Prevention of Vγ9Vδ2 T Cell Activation by a Vγ9Vδ2 TCR Nanobody.

scientific article published on 28 November 2016

Ranking multiple docking solutions based on the conservation of inter‐residue contacts ⬇️

scientific article published on June 17, 2013

Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.

scientific article

Structural basis for the recognition in an idiotype-anti-idiotype antibody complex related to celiac disease.

scientific article

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

scientific article

Using a consensus approach based on the conservation of inter-residue contacts to rank CAPRI models

scientific article published on 17 October 2013

iSEE: Interface Structure, Evolution and Energy-based machine learning predictor of binding affinity changes upon mutations

scholarly article published 25 May 2018

iSEE: Interface structure, evolution, and energy-based machine learning predictor of binding affinity changes upon mutations

scientific article published on 03 December 2018

List of works by Anna Vangone

A recurrent Gly43Asp substitution in coagulation Factor X rigidifies its catalytic pocket and impairs catalytic activity and intracellular trafficking

Analysis of the interface variability in NMR structure ensembles of protein-protein complexes

COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes

CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions

CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts

CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts

Contacts-based prediction of binding affinity in protein-protein complexes

Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes.

Fragment-based modeling of membrane protein loops: successes, failures, and prospects for the future

Large-scale prediction of binding affinity in protein–small ligand complexes: the PRODIGY-LIG web server

MDcons: Intermolecular contact maps as a tool to analyze the interface of protein complexes from molecular dynamics trajectories

PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes

PRODIGY: a web server for predicting the binding affinity of protein-protein complexes

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

Prevention of Vγ9Vδ2 T Cell Activation by a Vγ9Vδ2 TCR Nanobody.

Ranking multiple docking solutions based on the conservation of inter‐residue contacts ⬇️

Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.

Structural basis for the recognition in an idiotype-anti-idiotype antibody complex related to celiac disease.

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

Using a consensus approach based on the conservation of inter-residue contacts to rank CAPRI models

iSEE: Interface Structure, Evolution and Energy-based machine learning predictor of binding affinity changes upon mutations

iSEE: Interface structure, evolution, and energy-based machine learning predictor of binding affinity changes upon mutations