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List of works by John F Thompson

A comparison of single molecule and amplification based sequencing of cancer transcriptomes

scientific article (publication date: March 2011)

A comprehensive 1,000 Genomes-based genome-wide association meta-analysis of coronary artery disease

scientific article

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

scientific article

A genome-wide association study identifies LIPA as a susceptibility gene for coronary artery disease

scientific article

A genome-wide association study reveals variants in ARL15 that influence adiponectin levels

scientific article

A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium

scientific article

An association study of 43 SNPs in 16 candidate genes with atorvastatin response

scientific article published in January 2005

Application of pooled genotyping to scan candidate regions for association with HDL cholesterol levels

scientific article

Association between single-nucleotide polymorphisms in the endothelial lipase (LIPG) gene and high-density lipoprotein cholesterol levels

scientific article published in February 2004

Association of torsades de pointes with novel and known single nucleotide polymorphisms in long QT syndrome genes

article

Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants

scientific article

Biological, clinical and population relevance of 95 loci for blood lipids

scientific article

CETP polymorphisms associated with HDL cholesterol may differ from those associated with cardiovascular disease.

scientific article published on 16 February 2005

Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway.

scientific article

Cholesterol 7 alpha hydroxylase promoter separated from cyclophilin pseudogene by Alu sequence

scientific article

Cholesteryl ester transfer protein variants have differential stability but uniform inhibition by torcetrapib.

scientific article published on 28 January 2005

Coding Variation in ANGPTL4, LPL, and SVEP1 and the Risk of Coronary Disease

scientific article published on 2 March 2016

Comprehensive whole-genome and candidate gene analysis for response to statin therapy in the Treating to New Targets (TNT) cohort

scientific article published on 12 February 2009

Control of directionality in lambda site specific recombination

scientific article published on November 1985

Crystal structure of human squalene synthase. A key enzyme in cholesterol biosynthesis

scientific article published in September 2000

Dependence of 4'-(hydroxymethyl)-4,5',8-trimethylpsoralen photoaddition on the conformation of RNA

scientific article published on 01 March 1982

Determination of the secondary structure of Drosophila melanogaster 5 S RNA by hydroxymethyltrimethylpsoralen crosslinking.

scientific article published in April 1981

Direct biomechanical induction of endogenous calcineurin inhibitor Down Syndrome Critical Region-1 in cardiac myocytes

scientific journal article

Distinct loci in the CHRNA5/CHRNA3/CHRNB4 gene cluster are associated with onset of regular smoking

scientific article

E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo

scientific article published on November 1990

Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes

scientific article published on October 1988

Expression of CETP and of splice variants induces the same level of ER stress despite secretion efficiency differences

scientific article published on 28 May 2008

Four genetic loci influencing electrocardiographic indices of left ventricular hypertrophy

scientific article published on 30 September 2011

Frequency and function of CETP variants among individuals of Asian ancestry

scientific article published on 22 March 2008

Genetic architecture of ambulatory blood pressure in the general population: insights from cardiovascular gene-centric array

scientific article

Genetic association of the CCR5 region with lipid levels in at-risk cardiovascular patients.

scientific article published on 03 February 2010

Genetic variants influencing circulating lipid levels and risk of coronary artery disease

scientific article published on 23 September 2010

Genetically determined height and coronary artery disease

scientific article

Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants

scientific article

Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls

scientific article

Genome-wide haplotype association study identifies the SLC22A3-LPAL2-LPA gene cluster as a risk locus for coronary artery disease

scientific article published on 8 February 2009

Genome-wide scan identifies variation in MLXIPL associated with plasma triglycerides

scientific article

Genomewide association analysis of coronary artery disease

scientific article

Helicos single-molecule sequencing of bacterial genomes

scientific article published in January 2011

High-density genotyping and functional SNP localization in the CETP gene

scientific article published on 15 November 2006

Highly polymorphic repeat region in the CETP promoter induces unusual DNA structure

scientific article published in August 2004

Hundreds of variants clustered in genomic loci and biological pathways affect human height

scientific article

Identification of ADAMTS7 as a novel locus for coronary atherosclerosis and association of ABO with myocardial infarction in the presence of coronary atherosclerosis: two genome-wide association studies

scientific article

Identification of IEX-1 as a biomechanically controlled nuclear factor-kappaB target gene that inhibits cardiomyocyte hypertrophy

scientific article

Identification of a site of psoralen crosslinking in E. coli 16S ribosomal RNA

scientific article published on May 1982

Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders

scientific article published on 14 April 2013

Identification of seven loci affecting mean telomere length and their association with disease

scientific article published on April 2013

Identification of the modified nucleotides produced by covalent photoaddition of hydroxymethyltrimethylpsoralen to RNA.

scientific article

Improving ancient DNA read mapping against modern reference genomes

scientific article (publication date: 10 May 2012)

Improving the performance of true single molecule sequencing for ancient DNA

scientific article (publication date: 10 May 2012)

Increased genetic vulnerability to smoking at CHRNA5 in early-onset smokers

scientific article

Lack of association between the Trp719Arg polymorphism in kinesin-like protein-6 and coronary artery disease in 19 case-control studies

scientific article

Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease

scientific article

Large-scale association analysis identifies new risk loci for coronary artery disease

scientific article published on 02 December 2012

Loss of Cardioprotective Effects at the ADAMTS7 Locus as a Result of Gene-Smoking Interactions

scientific article published on May 2017

Mapping and sequencing DNA using nanopores and nanodetectors.

scientific article

Mechanical strain induces specific changes in the synthesis and organization of proteoglycans by vascular smooth muscle cells

scientific article (publication date: 27 April 2001)

Meta-analysis and imputation refines the association of 15q25 with smoking quantity

scientific article

Mutation of a Protease-sensitive Region in Firefly Luciferase Alters Light Emission Properties ⬇️

scientific article published on July 25, 1997

Mutations in an integration host factor-binding site: effect on lambda site-specific recombination and regulatory implications

scientific article

Native molecular state of adeno-associated viral vectors revealed by single-molecule sequencing

scientific article published on 4 October 2011

New susceptibility locus for coronary artery disease on chromosome 3q22.3.

scientific article published on 08 February 2009

No Association of Coronary Artery Disease with X-Chromosomal Variants in Comprehensive International Meta-Analysis ⬇️

scientific article published on 12 October 2016

Novel lactone compounds from Mortierella verticillata that induce the human low density lipoprotein receptor gene: fermentation, isolation, structural elucidation and biological activities

article

Novel loci for adiponectin levels and their influence on type 2 diabetes and metabolic traits: a multi-ethnic meta-analysis of 45,891 individuals

scientific article

Novel variants in human and monkey CETP.

scientific article

Orthogonal NGS for High Throughput Clinical Diagnostics

scientific article published on 19 April 2016

Overexpression of eotaxin and the CCR3 receptor in human atherosclerosis: using genomic technology to identify a potential novel pathway of vascular inflammation

scientific article published on 01 October 2000

Pharmacogenomics: integration into drug discovery and development.

scientific article

Plasma HDL cholesterol and risk of myocardial infarction: a mendelian randomisation study

scientific article (publication date: 11 August 2012)

Polymorphisms in the CETP gene and association with CETP mass and HDL levels

scientific article

Protein binding to the low density lipoprotein receptor promoter in vivo is differentially affected by gene activation in primary human cells

article

Protein fusions of BPI with CETP retain functions inherent to each

scientific article published on 01 October 2006

Protein-protein interactions in a higher-order structure direct lambda site-specific recombination

scientific article published on 01 June 1987

Protocol dependence of sequencing-based gene expression measurements

scientific article (publication date: 6 May 2011)

Quantification of the yeast transcriptome by single-molecule sequencing

scientific article published on 5 July 2009

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

scientific article

Recurrent heteroplasmy for the MT-ATP6 p.Ser148Asn (m.8969G>A) mutation in patients with syndromic congenital sideroblastic anemia of variable clinical severity

scientific article published on 13 July 2018

Regulation of apoAI processing by procollagen C-proteinase enhancer-2 and bone morphogenetic protein-1.

scientific article

Repeated replication and a prospective meta-analysis of the association between chromosome 9p21.3 and coronary artery disease

scientific article published on 24 March 2008

Role of a KCNH2 polymorphism (R1047 L) in dofetilide-induced Torsades de Pointes

scientific article

Separating the mechanism-based and off-target actions of cholesteryl ester transfer protein inhibitors with CETP gene polymorphisms

scientific article

Sequence variants at CHRNB3-CHRNA6 and CYP2A6 affect smoking behavior

scientific article

Sequencing of the cholesteryl ester transfer protein 5' regulatory region using artificial transposons

scientific article published on September 1997

Single molecule sequencing with a HeliScope genetic analysis system

scientific article

Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer.

scientific article published on October 2015

Single-molecule sequencing: sequence methods to enable accurate quantitation.

scientific article published on January 2010

Single-step capture and sequencing of natural DNA for detection of BRCA1 mutations

scientific article

Structure of E. coli 16S RNA elucidated by psoralen crosslinking

scientific article published on 01 April 1983

Systematic Evaluation of Pleiotropy Identifies 6 Further Loci Associated With Coronary Artery Disease ⬇️

scientific article published on February 2017

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

scientific article

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA.

scientific article

The properties and applications of single-molecule DNA sequencing.

scientific article

Transcriptional Modulators Affect in Vivo Protein Binding to the Low Density Lipoprotein Receptor and 3-Hydroxy-3-methylglutaryl Coenzyme A Reductase Promoters

scientific article published in Journal of Biological Chemistry

Transcriptional Profile of Mechanically Induced Genes in Human Vascular Smooth Muscle Cells

article

True single-molecule DNA sequencing of a pleistocene horse bone

scientific article (publication date: October 2011)

Truncation of human squalene synthase yields active, crystallizable protein

scientific article published on February 1998

Urotensin-II system in genetic control of blood pressure and renal function

scientific article

Virtual terminator nucleotides for next-generation DNA sequencing.

scientific article published on 20 July 2009

What would you do if you could sequence everything?

scientific article

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