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List of works by David Lyon

A Proteomic Workflow Using High-Throughput De Novo Sequencing Towards Complementation of Genome Information for Improved Comparative Crop Science.

scientific article published on January 2016

Accurate Quantification of Site-specific Acetylation Stoichiometry Reveals the Impact of Sirtuin Deacetylase CobB on the E. coli Acetylome

scientific article published on 2 March 2017

Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation

scientific article published on 05 March 2019

Automated protein turnover calculations from 15N partial metabolic labeling LC/MS shotgun proteomics data

scientific article

Avoiding abundance bias in the functional annotation of posttranslationally modified proteins

scientific article (publication date: 29 October 2015)

Comprehensive cell-specific protein analysis in early and late pollen development from diploid microsporocytes to pollen tube growth

scientific article published on 27 September 2013

Comprehensive tissue-specific proteome analysis of drought stress responses in Pennisetum glaucum (L.) R. Br. (Pearl millet).

scientific article

Drought and Recovery: Independently Regulated Processes Highlighting the Importance of Protein Turnover Dynamics and Translational Regulation in Medicago truncatula.

scientific article

Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny

scientific article published on 11 September 2019

Early Pleistocene enamel proteome sequences from Dmanisi resolve Stephanorhinus phylogeny

scholarly article published 10 September 2018

Granger causality in integrated GC-MS and LC-MS metabolomics data reveals the interface of primary and secondary metabolism.

scientific article

Long-term iron deficiency: Tracing changes in the proteome of different pea (Pisum sativum L.) cultivars

scientific article

Mass Western for Absolute Quantification of Target Proteins and Considerations About the Instrument of Choice

scientific article published on 01 January 2014

Medicago truncatula and Glycine max: Different Drought Tolerance and Similar Local Response of the Root Nodule Proteome

scientific article

Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls

scientific article published on 14 September 2016

Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting

scientific article published on 26 April 2018

Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting.

scientific article published on 30 March 2018

Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform.

scientific article published on 17 November 2012

Possible Role of Nutritional Priming for Early Salt and Drought Stress Responses in Medicago truncatula.

scientific article

Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells

scientific article (publication date: 30 August 2016)

Quantitative metaproteomics of medieval dental calculus reveals individual oral health status

scientific article published in Nature Communications

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

scientific article published on 22 November 2018

Site-specific characterization of endogenous SUMOylation across species and organs.

scientific article published on 25 June 2018

Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation

scientific article published on 23 January 2017

Specifying RNA-Binding Regions in Proteins by Peptide Cross-Linking and Affinity Purification

scientific article

Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation

scientific article published on 01 August 2018

Targeted quantitative analysis of a diurnal RuBisCO subunit expression and translation profile in Chlamydomonas reinhardtii introducing a novel Mass Western approach

scientific article published on 07 October 2014

The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets

scientific article published on 25 November 2020

Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments ⬇️

scientific article published on February 28, 2013

mzGroupAnalyzer--predicting pathways and novel chemical structures from untargeted high-throughput metabolomics data

scientific article (publication date: 2014)

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