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List of works by Marco Ventura

A microbiome reality check: limitations of in silico-based metagenomic approaches to study complex bacterial communities

scientific article published on 11 November 2019

A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003.

scientific article

Ability of Bifidobacterium breve to grow on different types of milk: exploring the metabolism of milk through genome analysis

scientific article

Ability of bifidobacteria to metabolize chitin-glucan and its impact on the gut microbiota

scientific article published on 08 April 2019

An efficient and reproducible method for transformation of genetically recalcitrant bifidobacteria

scientific article published on 19 June 2012

Analyses of bifidobacterial prophage-like sequences

scientific article published on 15 March 2010

Analysis of bifidobacterial evolution using a multilocus approach

scientific article published in December 2006

Analysis of predicted carbohydrate transport systems encoded by Bifidobacterium bifidum PRL2010

scientific article

Analysis, characterization, and loci of the tuf genes in lactobacillus and bifidobacterium species and their direct application for species identification

scientific article

Antibiotics in early life alter the gut microbiome and increase disease incidence in a spontaneous mouse model of autoimmune insulin-dependent diabetes

scientific article published on 13 May 2015

Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol

scientific article

Bacteria as vitamin suppliers to their host: a gut microbiota perspective

scientific article published on 30 August 2012

Bifidobacteria and humans: our special friends, from ecological to genomics perspectives

scientific article published on 16 September 2013

Bifidobacteria: from ecology to genomics

scientific article published on January 2009

Bifidobacterial Transfer from Mother to Child as Examined by an Animal Model

scientific article published on 27 August 2019

Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut

scientific article

Bifidobacterium bifidum PRL2010 modulates the host innate immune response

scientific article

Bifidobacterium bifidum and the infant gut microbiota: an intriguing case of microbe-host co-evolution

scientific article published on 20 June 2019

Bifidobacterium bifidum as an example of a specialized human gut commensal

scientific article

Catching a glimpse of the bacterial gut community of companion animals: a canine and feline perspective

scientific article published on 30 August 2020

Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses

scientific article published on October 2004

Characterization of the serpin-encoding gene of Bifidobacterium breve 210B

scientific article

Claimed Effects, Outcome Variables and Methods of Measurement for Health Claims Proposed Under European Community Regulation 1924/2006 in the Framework of Maintenance of Skin Function

scientific article published on 22 December 2017

Claimed Effects, Outcome Variables and Methods of Measurement for Health Claims on Foods Related to Vision Proposed Under Regulation (EC) 1924/2006.

scientific article published on 14 February 2018

Comparative Genome Analyses of Lactobacillus crispatus Isolates from Different Ecological Niches Reveal an Adaptation of This Species to the Human Vaginal Environment

scientific article published in 2021

Comparative analyses of prophage-like elements present in bifidobacterial genomes

scientific article published on 04 September 2009

Comparative analyses of prophage-like elements present in two Lactococcus lactis strains

scientific article

Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei

scientific article

Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon

scientific article published on 03 May 2013

Comparative genomics of the Bifidobacterium breve taxon

scientific article

Comparative genomics of the genus Bifidobacterium

scientific article published on 15 July 2010

Comparative sequence analysis of the tuf and recA genes and restriction fragment length polymorphism of the internal transcribed spacer region sequences supply additional tools for discriminating Bifidobacterium lactis from Bifidobacterium animalis

scientific article published on December 2003

Complete genome sequence of Bifidobacterium animalis subsp. lactis BLC1

scientific article published on November 2011

Comprehensive insights from composition to functional microbe-based biodiversity of the infant human gut microbiota

scientific article published in 2023

Contribution of Aggregation-Promoting Factor to Maintenance of Cell Shape in Lactobacillus gasseri 4B2 ⬇️

scientific article published on June 1, 2003

Deciphering the impact of diet and host physiology on the mammalian gut microbiome by multi-omics approaches

scientific article published on 18 September 2020

Discovery of a conjugative megaplasmid in Bifidobacterium breve.

scientific article

Diversity of bifidobacteria within the infant gut microbiota

scientific article

Diversity, ecology and intestinal function of bifidobacteria

scientific article

Draft Genome Sequence and Secondary Metabolite Biosynthetic Potential of the Lysobacter niastensis Type Strain DSM 18481

scientific article published on 07 January 2021

Envisioning emerging frontiers on human gut microbiota and its applications

scientific article published on 24 September 2020

Evaluation of adhesion properties and antibacterial activities of the infant gut commensal Bifidobacterium bifidum PRL2010.

scientific article published on 22 March 2013

Evaluation of bifidobacterial community composition in the human gut by means of a targeted amplicon sequencing (ITS) protocol

scientific article

Evidence for cholesterol-lowering activity by Bifidobacterium bifidum PRL2010 through gut microbiota modulation

scientific article published on 12 April 2015

Evolutionary development and co-phylogeny of primate-associated bifidobacteria

scientific article published on 09 June 2020

Exploration of the genomic diversity and core genome of the Bifidobacterium adolescentis phylogenetic group by means of a polyphasic approach

scientific article published on 12 October 2012

Exploring the Ecological Effects of Naturally Antibiotic-Insensitive Bifidobacteria in the Recovery of the Resilience of the Gut Microbiota during and after Antibiotic Treatment

scientific article published in 2022

Exploring the diversity of the bifidobacterial population in the human intestinal tract

scientific article

Exploring the effects of COLOSTRONONI on the mammalian gut microbiota composition

scientific article published on 31 May 2019

Expression of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in response to environmental gut conditions

scientific article published on 7 July 2014

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor

scientific article

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium

scientific article published on 30 August 2011

Genetic insights into the dark matter of the mammalian gut microbiota through targeted genome reconstruction

scientific article published on 19 May 2021

Genetic strategies for mucin metabolism in Bifidobacterium bifidum PRL2010: an example of possible human-microbe co-evolution

scientific article published in May 2011

Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging

scientific article

Genome sequence of Parascardovia denticolens IPLA 20019, isolated from human breast milk

scientific article

Genome sequence of the immunomodulatory strain Bifidobacterium bifidum LMG 13195

scientific article published on December 2012

Genome-scale analyses of health-promoting bacteria: probiogenomics

scientific article

Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L.

scientific article

Genomic encyclopedia of type strains of the genus Bifidobacterium

scientific article

Genomic overview and biological functions of exopolysaccharide biosynthesis in Bifidobacterium spp.

scientific article published on 11 October 2013

Genomics and ecological overview of the genus Bifidobacterium

scientific article published on 28 December 2010

Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria.

scientific article published on 28 October 2006

Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum

scientific article

Global genome transcription profiling of Bifidobacterium bifidum PRL2010 under in vitro conditions and identification of reference genes for quantitative real-time PCR

scientific article published on 14 October 2011

Health benefits conferred by the human gut microbiota during infancy

article

Host-microbe interactions that facilitate gut colonization by commensal bifidobacteria

scientific article published on 16 August 2012

How bifidobacterial genomics could help in understanding probiotic-prebiotic functionality

article by Marco Ventura et al published January 2008 in Microbial ecology in health and disease

How high G+C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators

scientific article

How to Feed the Mammalian Gut Microbiota: Bacterial and Metabolic Modulation by Dietary Fibers

scientific article published on 12 September 2017

Human colon-derived soluble factors modulate gut microbiota composition.

scientific article

Human gut microbiota and bifidobacteria: from composition to functionality

scientific article

Identification and characterization of novel surface proteins in Lactobacillus johnsonii and Lactobacillus gasseri.

scientific article published on December 2002

Identification and tracing of Bifidobacterium species by use of enterobacterial repetitive intergenic consensus sequences.

scientific article published on July 2003

Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum

scientific article published on 14 February 2015

Insights into physiological and genetic mupirocin susceptibility in bifidobacteria

scientific article

Intercepting genomic variability of Gardnerella vaginalis species through comparative genomics analyses: evolutionary and ecological implications

scientific article published on 23 October 2020

Intestinal dysbiosis associated with systemic lupus erythematosus

scientific article

Intestinal microbiota development in preterm neonates and effect of perinatal antibiotics

scientific article

Introduction to the special issue "Probiotic bacteria and human gut microbiota"

scientific article

Investigation of the Ecological Link between Recurrent Microbial Human Gut Communities and Physical Activity

scientific article published on 04 April 2022

Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics

scientific article

Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches

scientific article published on 16 May 2019

Kefir fermented milk and kefiran promote growth of Bifidobacterium bifidum PRL2010 and modulate its gene expression

article

Lactobacillus rossiae, a vitamin B12 producer, represents a metabolically versatile species within the Genus Lactobacillus

scientific article

Lactococcus garvieae: where is it from? A first approach to explore the evolutionary history of this emerging pathogen

scientific article

Metabolism of four α-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003

scientific article published on 02 August 2013

Metabolism of sialic acid by Bifidobacterium breve UCC2003.

scientific article

Metagenomic dissection of the canine gut microbiota: insights into taxonomic, metabolic and nutritional features

scientific article published on 18 March 2019

Microbiomic analysis of the bifidobacterial population in the human distal gut.

scientific article

Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective

scientific article

Mosaic-like sequences containing transposon, phage, and plasmid elements among Listeria monocytogenes plasmids

scientific article published on 28 May 2010

Phylogenomic disentangling of the Bifidobacterium longum subsp. infantis taxon

scientific article published in 2021

Polyphasic taxonomic analysis of Bifidobacterium animalis and Bifidobacterium lactis reveals relatedness at the subspecies level: reclassification of Bifidobacterium animalis as Bifidobacterium animalis subsp. animalis subsp. nov. and [...]

scientific article

Progress in genomics, metabolism and biotechnology of bifidobacteria ⬇️

scientific article published on January 26, 2011

Rapid identification, differentiation, and proposed new taxonomic classification of Bifidobacterium lactis.

scientific article published on December 2002

Role of extracellular transaldolase from Bifidobacterium bifidum in mucin adhesion and aggregation.

scientific article

Role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions

scientific article published on 17 June 2013

Sequence and comparative genomic analysis of lactococcal bacteriophages jj50, 712 and P008: evolutionary insights into the 936 phage species

scientific article published in August 2006

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity

scientific article

The clpB gene of Bifidobacterium breve UCC 2003: transcriptional analysis and first insights into stress induction

scientific article published in September 2005

The impact of bacteriophages on probiotic bacteria and gut microbiota diversity

scientific article

The prophage sequences of Lactobacillus plantarum strain WCFS1

scientific article published on 01 November 2003

The prophages of Lactobacillus johnsonii NCC 533: comparative genomics and transcription analysis

scientific article published on March 2004

Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX

article

Transcription analysis of Streptococcus thermophilus phages in the lysogenic state

scientific article published in October 2002

Transcription mapping as a tool in phage genomics: the case of the temperate Streptococcus thermophilus phage Sfi21.

scientific article published in April 2002

Transcriptional analysis of the genetic elements involved in the lysogeny/lysis switch in the temperate lactococcal bacteriophage phiLC3, and identification of the Cro-like protein ORF76.

scientific article

Unraveling the Microbiome of Necrotizing Enterocolitis: Insights in Novel Microbial and Metabolomic Biomarkers

scientific article published on 27 October 2021

Untangling Species-Level Composition of Complex Bacterial Communities through a Novel Metagenomic Approach

scientific article published on 28 July 2020

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