List of works - Silvia G. Acinas

A holistic approach to marine eco-systems biology

scientific article

A metagenomic assessment of microbial eukaryotic diversity in the global ocean

scientific article published on 17 February 2020

A(r)Ray of hope in analysis of the function and diversity of microbial communities.

scientific article

Abundant deep ocean heterotrophic bacteria are culturable

scientific article published on 19 December 2022

Author Correction: Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 12 November 2020

Closing the gaps on the viral photosystem-I psaDCAB gene organization

scientific article published on 26 August 2015

Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

scientific article

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

scientific article

Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes

scientific article published on 16 October 2015

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

scientific article

Delineation of ecologically distinct units of marine Bacteroidetes in the Northwestern Mediterranean Sea

scientific article published on 17 May 2019

Description of prokaryotic biodiversity along the salinity gradient of a multipond solar saltern by direct PCR amplification of 16S rDNA

article published in 1996

Different processes shape prokaryotic and picoeukaryotic assemblages in the sunlit ocean microbiome

Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.

scientific article published on May 2004

Diversity and distribution of marine heterotrophic bacteria from a large culture collection

scientific article published on 13 July 2020

Diversity and phylogeny of Baltic Sea picocyanobacteria inferred from their ITS and phycobiliprotein operons

scientific article

Diversity of nitrogen-fixing bacteria in cyanobacterial mats

scientific article

Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

scientific article

Ecology of marine Bacteroidetes: a comparative genomics approach

scientific article published on 10 January 2013

Evaluation of 23S rRNA PCR primers for use in phylogenetic studies of bacterial diversity

scientific article

Evaluation of marine bacteroidetes-specific primers for microbial diversity and dynamics studies

scientific article published on 18 July 2012

Expansion of the global RNA virome reveals diverse clades of bacteriophages

scientific article published in October 2022

Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes

scientific article published on 25 July 2017

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

scientific article

Fine-scale phylogenetic architecture of a complex bacterial community.

scientific article published in July 2004

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

scientific article published on 01 November 2019

Global Trends in Marine Plankton Diversity across Kingdoms of Life

scientific article published on 01 November 2019

Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis

scientific article published on 25 September 2015

Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

scientific article published on 06 July 2021

Global diversity and biogeography of deep-sea pelagic prokaryotes

scientific article published on 7 August 2015

Global genetic capacity for mixotrophy in marine picocyanobacteria

scientific article

Heterotrophic bacteria, activity and bacterial diversity in two coastal lagoons as detected by culture and 16S rRNA genes PCR amplification and partial sequencing

article

Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean

scientific article published on 29 April 2019

Important contribution of macroalgae to oceanic carbon sequestration

scientific article published on 05 August 2019

Large variability of bathypelagic microbial eukaryotic communities across the world's oceans.

scientific article published on 9 October 2015

Large-scale ocean connectivity and planktonic body size

scientific article published on 10 January 2018

Life-style and genome structure of marine Pseudoalteromonas siphovirus B8b isolated from the northwestern Mediterranean Sea

scientific article

Mesonia oceanica sp. nov., isolated from oceans during the Tara oceans expedition, with a preference for mesopelagic waters

scientific article published on 26 June 2020

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

scientific article published on 18 September 2013

Ocean plankton. Determinants of community structure in the global plankton interactome

scientific article published on May 2015

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport

scientific article

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

scientific article published on May 2015

Ocean plankton. Patterns and ecological drivers of ocean viral communities

scientific article published on May 2015

Ocean plankton. Structure and function of the global ocean microbiome

scientific article published on May 2015

PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.

scientific article published in December 2005

Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes.

scientific article

Parvicella tangerina gen. nov., sp. nov. (Parvicellaceae fam. nov., Flavobacteriales), first cultured representative of the marine clade UBA10066, and Lysobacter luteus sp. nov., from activated sludge of a seawater-processing wastewater treatment… ⬇️

scientific article published on 22 August 2022

Patterns and architecture of genomic islands in marine bacteria

scientific article

Phenotypic and genetic diversification of Pseudanabaena spp. (cyanobacteria).

scientific article

Phenotypic plasticity in freshwater picocyanobacteria

scientific article

Plankton networks driving carbon export in the oligotrophic ocean

scientific article

Prevalence and microdiversity of Alteromonas macleodii-like microorganisms in different oceanic regions.

scientific article

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

scientific article published on 25 June 2013

Prokaryotic functional gene diversity in the sunlit ocean: Stumbling in the dark

scientific article published on 6 April 2015

Roadmap for naming uncultivated Archaea and Bacteria

scientific article published on 08 June 2020

Sequencing Effort Dictates Gene Discovery in Marine Microbial Metagenomes

scientific article published on 02 August 2020

Spatial and temporal variability among marine Bacteroidetes populations in the NW Mediterranean Sea.

scientific article

Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA

scientific article published in 2006

Tara Oceans: towards global ocean ecosystems biology

scientific article published on 12 May 2020

Thalassocella blandensis gen. nov., sp. nov., a novel member of the family Cellvibrionaceae

scientific article published on 3 December 2019

The phylogenetic and ecological context of cultured and whole genome-sequenced planktonic bacteria from the coastal NW Mediterranean Sea.

scientific article published on 23 January 2014

Transcriptome Fingerprinting Analysis: An Approach to Explore Gene Expression Patterns in Marine Microbial Communities ⬇️

scientific article published on August 9, 2011

Unifying the known and unknown microbial coding sequence space

scientific article published on 31 March 2022

Use of the 16S–23S ribosomal genes spacer region in studies of prokaryotic diversity

article

Validation of a new catalysed reporter deposition-fluorescence in situ hybridization probe for the accurate quantification of marine Bacteroidetes populations

scientific article

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

scientific article

List of works by Silvia G. Acinas

A holistic approach to marine eco-systems biology

A metagenomic assessment of microbial eukaryotic diversity in the global ocean

A(r)Ray of hope in analysis of the function and diversity of microbial communities.

Abundant deep ocean heterotrophic bacteria are culturable

Author Correction: Roadmap for naming uncultivated Archaea and Bacteria

Closing the gaps on the viral photosystem-I psaDCAB gene organization

Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

Delineation of ecologically distinct units of marine Bacteroidetes in the Northwestern Mediterranean Sea

Description of prokaryotic biodiversity along the salinity gradient of a multipond solar saltern by direct PCR amplification of 16S rDNA

Different processes shape prokaryotic and picoeukaryotic assemblages in the sunlit ocean microbiome

Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.

Diversity and distribution of marine heterotrophic bacteria from a large culture collection

Diversity and phylogeny of Baltic Sea picocyanobacteria inferred from their ITS and phycobiliprotein operons

Diversity of nitrogen-fixing bacteria in cyanobacterial mats

Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

Ecology of marine Bacteroidetes: a comparative genomics approach

Evaluation of 23S rRNA PCR primers for use in phylogenetic studies of bacterial diversity

Evaluation of marine bacteroidetes-specific primers for microbial diversity and dynamics studies

Expansion of the global RNA virome reveals diverse clades of bacteriophages

Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

Fine-scale phylogenetic architecture of a complex bacterial community.

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

Global Trends in Marine Plankton Diversity across Kingdoms of Life

Global distribution and vertical patterns of a prymnesiophyte-cyanobacteria obligate symbiosis

Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

Global diversity and biogeography of deep-sea pelagic prokaryotes

Global genetic capacity for mixotrophy in marine picocyanobacteria

Heterotrophic bacteria, activity and bacterial diversity in two coastal lagoons as detected by culture and 16S rRNA genes PCR amplification and partial sequencing

Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean

Important contribution of macroalgae to oceanic carbon sequestration

Large variability of bathypelagic microbial eukaryotic communities across the world's oceans.

Large-scale ocean connectivity and planktonic body size

Life-style and genome structure of marine Pseudoalteromonas siphovirus B8b isolated from the northwestern Mediterranean Sea

Mesonia oceanica sp. nov., isolated from oceans during the Tara oceans expedition, with a preference for mesopelagic waters

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

Ocean plankton. Determinants of community structure in the global plankton interactome

Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean

Ocean plankton. Patterns and ecological drivers of ocean viral communities

Ocean plankton. Structure and function of the global ocean microbiome

PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.

Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes.

Parvicella tangerina gen. nov., sp. nov. (Parvicellaceae fam. nov., Flavobacteriales), first cultured representative of the marine clade UBA10066, and Lysobacter luteus sp. nov., from activated sludge of a seawater-processing wastewater treatment… ⬇️

Patterns and architecture of genomic islands in marine bacteria

Phenotypic and genetic diversification of Pseudanabaena spp. (cyanobacteria).

Phenotypic plasticity in freshwater picocyanobacteria

Plankton networks driving carbon export in the oligotrophic ocean

Prevalence and microdiversity of Alteromonas macleodii-like microorganisms in different oceanic regions.

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

Prokaryotic functional gene diversity in the sunlit ocean: Stumbling in the dark

Roadmap for naming uncultivated Archaea and Bacteria

Sequencing Effort Dictates Gene Discovery in Marine Microbial Metagenomes

Spatial and temporal variability among marine Bacteroidetes populations in the NW Mediterranean Sea.

Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA

Tara Oceans: towards global ocean ecosystems biology

Thalassocella blandensis gen. nov., sp. nov., a novel member of the family Cellvibrionaceae

The phylogenetic and ecological context of cultured and whole genome-sequenced planktonic bacteria from the coastal NW Mediterranean Sea.

Transcriptome Fingerprinting Analysis: An Approach to Explore Gene Expression Patterns in Marine Microbial Communities ⬇️

Unifying the known and unknown microbial coding sequence space

Use of the 16S–23S ribosomal genes spacer region in studies of prokaryotic diversity

Validation of a new catalysed reporter deposition-fluorescence in situ hybridization probe for the accurate quantification of marine Bacteroidetes populations

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition