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List of works by Dirk Walther

Analysis of Arabidopsis natural variation in biomass accumulation and metabolism

Assessment of drought tolerance and its potential yield penalty in potato

scientific article published on 01 June 2015

Basecalling with LifeTrace

scientific article

Brownian dynamics simulation of the lateral distribution of charged membrane components

scientific article published in January 1996

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

scientific article

Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana

scientific article

Characterization and identification of cis-regulatory elements in Arabidopsis based on single-nucleotide polymorphism information.

scientific article

Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply

scientific article published on 29 November 2017

ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii

scientific article

Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis

scientific article published in May 2003

Co-evolution of proteins with their interaction partners

scientific article published on June 2000

Comparative analysis of miRNAs and their targets across four plant species

scientific article

Computational phosphorylation network reconstruction: methods and resources.

scientific article

Conducting molecular biomarker discovery studies in plants

scientific article published on January 2012

Control of retrograde signalling by protein import and cytosolic folding stress

scientific article published on 06 May 2019

Decision tree supported substructure prediction of metabolites from GC-MS profiles

scientific article

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

scientific article

Dynamic transcriptional and metabolic responses in yeast adapting to temperature stress

scientific article published on June 2010

Editorial: Metabolome Informatics and Statistics: Current State and Emerging Trends

scientific article published on 19 July 2016

Effect of Senescence Phenotypes and Nitrate Availability on Wheat Leaf Metabolome during Grain Filling

scientific article published on 11 June 2019

Emergence of novel RNA editing sites by changes in the binding affinity of a conserved PPR protein

scientific article published in 2022

Endogenous Arabidopsis messenger RNAs transported to distant tissues

scientific article published on 23 March 2015

Erratum to: 'The orientation of transcription factor binding site motifs in gene promoter regions: does it matter?'.

scientific article published on 28 April 2016

Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

scholarly article published in Metabolomics

Expression profiling of rice cultivars differing in their tolerance to long-term drought stress

scientific article published on 19 October 2008

Gene expression profiles and B-type natriuretic peptide elevation in heart transplantation: more than a hemodynamic marker

scientific article published in July 2006

Genome-Wide Approach to Identify Quantitative Trait Loci for Drought Tolerance in Tetraploid Potato (Solanum tuberosum L.)

scientific article published in 2021

Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5'-Position Alone

scientific article published on 7 December 2012

Graph-based models of the <i>Oenothera</i> mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization

scientific article published on 31 March 2022

Growth under Fluctuating Light Reveals Large Trait Variation in a Panel of Arabidopsis Accessions

scientific article published on 03 March 2020

Helix-helix packing angle preferences for finite helix axes

scientific article published in December 1998

Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves

scientific article published on 12 March 2019

Identification and classification of ncRNA molecules using graph properties

scientific article published in April 2009

Identification of a prion protein epitope modulating transmission of bovine spongiform encephalopathy prions to transgenic mice ⬇️

scientific article published on December 23, 1997

Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana

scientific article published on 26 May 2021

Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing

scientific article published on 22 May 2009

Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks

scientific article published in January 2011

Intrahelical side chain-side chain contacts: the consequences of restricted rotameric states and implications for helix engineering and design

scientific article published on 01 June 1996

Limited Phosphate: Mobile RNAs convey the message.

scientific article

Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding Sites ⬇️

scientific article published on June 23, 2011

Mass Spectral Search and Analysis Using the Golm Metabolome Database

Matapax: an online high-throughput genome-wide association study pipeline.

scientific article

Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs.

scientific article

Metabolic pathway relationships revealed by an integrative analysis of the transcriptional and metabolic temperature stress-response dynamics in yeast

scientific article published on June 2010

Metabolite and transcript markers for the prediction of potato drought tolerance.

scientific article published on 20 September 2017

Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii

scientific article published on May 2008

Modeling RNA loops using sequence homology and geometric constraints

scientific article

MolSurfer: A macromolecular interface navigator

scientific article

MolSurfer: two-dimensional maps for navigating three-dimensional structures of proteins

scientific article published on 01 July 1999

Multiple RNA processing defects and impaired chloroplast function in plants deficient in the organellar protein-only RNase P enzyme

scientific article published on 20 March 2015

Noninvasive discrimination of rejection in cardiac allograft recipients using gene expression profiling.

scientific article

PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

scientific article published on 4 November 2007

Physicochemical characteristics of structurally determined metabolite-protein and drug-protein binding events with respect to binding specificity.

scientific article published on 15 September 2015

Plant temperature acclimation and growth rely on cytosolic ribosome biogenesis factor homologs.

scientific article

Principles of helix-helix packing in proteins: the helical lattice superposition model

scientific article published in January 1996

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites

scientific article

Progress in Chemometrics and Biostatistics for Plant Applications, or: A Good Red Wine is a Bad White Wine

article

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana

scientific article

Ratio-dependent significance thresholds in reciprocal 15N-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment

scientific article published in April 2009

Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana

scientific article published on 24 December 2013

Reconstruction of low-resolution three-dimensional density maps from one-dimensional small-angle X-ray solution scattering data for biomolecules

article by Dirk Walther et al published 1 April 2000 in Journal of Applied Crystallography

Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis

scientific article

Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling

scientific article published on 18 November 2009

Serine 171, a conserved residue in the gamma-aminobutyric acid type A (GABAA) receptor gamma2 subunit, mediates subunit interaction and cell surface localization

scientific article published on 21 January 2004

Similar Yet Different-Structural and Functional Diversity among Arabidopsis thaliana LEA_4 Proteins

scientific article published on 17 April 2020

Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana

scientific article

Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein

scientific article published in July 2000

Solution structure of the spectrin repeat: a left-handed antiparallel triple-helical coiled-coil

scientific article

Spatial proximity statistics suggest a regulatory role of protein phosphorylation on compound binding.

scientific article

Substantial reprogramming of the Eutrema salsugineum (Thellungiella salsuginea) transcriptome in response to UV and silver nitrate challenge

scientific article published on 12 June 2015

The Golm Metabolome Database: a database for GC-MS based metabolite profiling

scholarly article by Jan Hummel et al published 2007 in Topics in current genetics

The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information

scientific article published in January 2016

The Metabolic Interplay between Plants and Phytopathogens

scientific article published on 8 January 2013

The complexity of gene expression dynamics revealed by permutation entropy.

scientific article

The drought response of potato reference cultivars with contrasting tolerance

scientific article

The influence of the local sequence environment on RNA loop structures

scientific article

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles

scientific article

The orientation of transcription factor binding site motifs in gene promoter regions: does it matter?

scientific article

The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana

scientific article

The roles of post-translational modifications in the context of protein interaction networks

scientific article

The sucrose-trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P.

scientific article published on 13 January 2014

WebMol--a Java-based PDB viewer.

scientific article published on July 1997

pcaMethods--a bioconductor package providing PCA methods for incomplete data

scientific article

tRNA-Related Sequences Trigger Systemic mRNA Transport in Plants.

scientific article

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