List of works by Christophe Plomion

"Contrasting patterns of selection at Pinus pinaster Ait. Drought stress candidate genes as revealed by genetic differentiation analyses".

scientific article

(Not) Keeping the stem straight: a proteomic analysis of maritime pine seedlings undergoing phototropism and gravitropism.

scientific article

A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study.

scientific article

A linkage disequilibrium perspective on the genetic mosaic of speciation in two hybridizing Mediterranean white oaks

scientific article

A micromethod for high throughput RNA extraction in forest trees

scientific article published in January 2007

A sample view of the pedunculate oak (Quercus robur) genome from the sequencing of hypomethylated and random genomic libraries

A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation

scientific article

Adaptation of forest trees to climate change

scientific article

Adaptive introgression as a driver of local adaptation to climate in European white oaks

scientific article published on 08 August 2019

Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding.

scientific article published on 20 December 2016

Advances in forest tree genomics. Forest Trees Workshop, Plant and Animal Genome XIII Conference, San Diego, CA, USA, January 2005

scientific article published on 01 June 2005

Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

scientific article

Annotated genetic linkage maps of Pinus pinaster Ait. from a Central Spain population using microsatellite and gene based markers.

scientific article

Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences

scientific article published in February 2004

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

scientific article

Candidate genes and QTLs for sugar and organic acid content in peach [ Prunus persica (L.) Batsch].

scientific article published on July 2002

Combining proteomic and genetic studies in plants.

scientific article

Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs)

scientific article published on 16 October 2003

Comparative mapping in the Fagaceae and beyond with EST-SSRs.

scientific article

Comprehensive genetic dissection of wood properties in a widely-grown tropical tree: Eucalyptus

scientific article

Compression wood-responsive proteins in developing xylem of maritime pine (Pinus pinaster ait.).

scientific article published on 01 July 2000

Copper stress-induced changes in leaf soluble proteome of Cu-sensitive and tolerant Agrostis capillaris L. populations

scientific article published on 22 February 2016

Correction: Linkage and Association Mapping for Two Major Traits Used in the Maritime Pine Breeding Program: Height Growth and Stem Straightness

scientific article published on 30 January 2017

Cross-species transferability and mapping of genomic and cDNA SSRs in pines

article

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology.

scientific article

Deciphering cork formation in Quercus suber.

scientific article

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

scientific article

Detection of genes involved in bud phenology in sessile oak (Quercus petraea Matt. Liebl) combining digital expression analysis and Q-PCR.

scientific article

Detection of quantitative trait loci controlling bud burst and height growth in Quercus robur L.

scientific article published on 13 October 2004

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

scientific article

Development of Target Sequence Capture and Estimation of Genomic Relatedness in a Mixed Oak Stand

scientific article published on 13 July 2018

Development of highly-multiplexed SNP arrays in maritime pine for multi-objective genetic applications.

scientific article

Differential accumulation of soluble proteins in roots of metallicolous and nonmetallicolous populations of Agrostis capillaris L. exposed to Cu.

scientific article published on 16 June 2014

Distribution of genomic regions differentiating oak species assessed by QTL detection

scientific article published on 01 January 2004

Drought differentially affects expression of a PR-10 protein, in needles of maritime pine (Pinus pinaster Ait.) seedlings.

scientific article

Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets

scientific article published in 2024

Estimation of the average effects of specific alleles detected by the pseudo-testcross QTL mapping strategy.

scientific article published on 15 September 1996

Evidence of intense chromosomal shuffling during conifer evolution

scientific article

Extensive recent secondary contacts between four European white oak species.

scientific article published on 13 January 2017

Fagaceae trees as models to integrate ecology, evolution and genomics.

scientific article published in January 2013

Forest ecosystem genomics and adaptation: EVOLTREE conference report

Forest tree genomics: 10 achievements from the past 10 years and future prospects

Functional variability of two lignification genes in Eucalyptus urophylla

scientific article

Gaining a global perspective on Fagaceae genomic diversification and adaptation.

scientific article published in May 2018

Genetic analysis using trans-dominant linked markers in an F2 family.

scientific article published in November 1996

Genetic architecture of carbon isotope composition and growth in Eucalyptus across multiple environments

scientific article

Genetic determinism of δ3-carene in maritime pine using RAPD markers

scientific article published on 01 December 1996

Genetic diversity within and among Pinus pinaster populations: comparison between AFLP and microsatellite markers

scientific article published on 01 April 2001

Genetic mapping of EST-derived simple sequence repeats (EST-SSRs) to identify QTL for leaf morphological characters in a Quercus robur full-sib family

Genetic resources in maritime pine (Pinus pinaster Aiton): molecular and quantitative measures of genetic variation and differentiation among maternal lineages

scientific article published in 2004

Genetic variation and drought response in two Populus x euramericana genotypes through 2-DE proteomic analysis of leaves from field and glasshouse cultivated plants

scientific article

Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine.

scientific article

Genome-wide evolutionary response of European oaks during the Anthropocene

publication published on 05 January 2022

Genomic Resources Notes Accepted 1 August 2015 - 31 September 2015.

scientific article published on January 2016

Genomic analysis in maritime pine (Pinus pinaster). Comparison of two RAPD maps using selfed and open-pollinated seeds of the same individual.

scientific article published on June 1995

Genomic landscape of the global oak phylogeny

scientific article published on 14 October 2019

Genomic selection in maritime pine

scientific article published on 18 August 2015

Genomics of Fagaceae

Genomics of growth traits in forest trees.

scientific article published on 29 January 2009

Geographical diversity and genetic relationships among Cedrus species estimated by AFLP

article

Hardwood Tree Genomics: Unlocking Woody Plant Biology

article

Heat induced changes in protein expression profiles of Norway spruce (Picea abies) ecotypes from different elevations

scientific article

High-Throughput DNA sequencing of ancient wood

scientific article published on 7 February 2018

High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster).

scientific article published on 10 September 2015

High-density linkage mapping and distribution of segregation distortion regions in the oak genome

scientific article published on 23 March 2016

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

scientific article

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly.

scientific article published on 10 November 2014

Higher needle anatomic plasticity is related to better water-use efficiency and higher resistance to embolism in fast-growing Pinus pinaster families under water scarcity

scientific article published on 24 September 2020

Hunting down fungal secretomes using liquid-phase IEF prior to high resolution 2-DE.

scientific article

Identification and characterization of water-stress-responsive genes in hydroponically grown maritime pine (Pinus pinaster) seedlings

scientific article

Identification of water-deficit responsive genes in maritime pine (Pinus pinaster Ait.) roots

scientific article

Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.).

scientific article published on 29 June 2016

In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?

scientific article

Inheritance and diversity of simple sequence repeat (SSR) microsatellite markers in various families of Picea abies.

scientific article

Integrated genetic mapping of 64 rat microsatellite markers from different sources

scientific article published on 01 April 1997

Integrative approach involving RNA-Seq, foliar traits and growth measurements revealed genotype-specific plasticity on Eucalyptus subjected to seasonal water shortage

scientific article

Interaction between environmental factors affects the accumulation of root proteins in hydroponically grown Eucalyptus globulus (Labill.).

scientific article

LPmerge: an R package for merging genetic maps by linear programming

scientific article published on 14 February 2014

Leaf proteome analysis of eight Populus xeuramericana genotypes: genetic variation in drought response and in water-use efficiency involves photosynthesis-related proteins

scientific article

Limited genetic variability and phenotypic plasticity detected for cavitation resistance in a Mediterranean pine

scientific article published on November 2013

Linkage and Association Mapping for Two Major Traits Used in the Maritime Pine Breeding Program: Height Growth and Stem Straightness.

scientific article

Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins

scientific article

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

article

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

scientific article published on 02 July 2019

Micro-evolutionary patterns of juvenile wood density in a pine species

article

Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue

scientific article

Molecular proxies for climate maladaptation in a long-lived tree (Pinus pinaster Aiton, Pinaceae).

scientific article

Nucleotide polymorphisms in a pine ortholog of the Arabidopsis degrading enzyme cellulase KORRIGAN are associated with early growth performance in Pinus pinaster

scientific article published on 20 June 2015

Nucleotide variation in genes involved in wood formation in two pine species

scientific article published on 01 July 2005

Oak genome reveals facets of long lifespan

scientific article published on 18 June 2018

Oak genomics takes off … and enters the ecological genomics era.

scientific article

Oak symbolism in the light of genomics

scientific article published on 10 June 2019

PROTICdb: a web-based application to store, track, query, and compare plant proteome data

scientific article

Palaeogenomics of plants: synteny-based modelling of extinct ancestors

scientific article published on 17 July 2010

Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA

article

Performance of genomic prediction within and across generations in maritime pine

scientific article

Plasticity of maritime pine (Pinus pinaster) wood-forming tissues during a growing season.

scientific article published in January 2008

Plasticity of primary and secondary growth dynamics in Eucalyptus hybrids: a quantitative genetics and QTL mapping perspective.

scientific article

Protein extraction from woody plants

scientific article published on 01 January 2007

Protein polymorphism between 2 Picea abies populations revealed by 2-dimensional gel electrophoresis and tandem mass spectrometry.

scientific article published on 15 March 2008

Proteomic analysis during ontogenesis of secondary xylem in maritime pine

scientific article published on 10 March 2014

Proteomic analysis of differentially expressed proteins in hepatocellular carcinoma developed in patients with chronic viral hepatitis C.

scientific article

Proteomic plasticity of two Eucalyptus genotypes under contrasted water regimes in the field.

scientific article

Proteomics research on forest trees, the most recalcitrant and orphan plant species

scientific article

Q(ST) < F(ST) As a signature of canalization.

scientific article published on 30 October 2012

Quantitative Proteomic and Phosphoproteomic Approaches for Deciphering the Signaling Pathway for Tension Wood Formation in Poplar.

scientific article published on 08 July 2015

Quantitative trait loci mapping for vegetative propagation in pedunculate oak

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus

scientific article

Range-wide phylogeography and gene zones in Pinus pinaster Ait. revealed by chloroplast microsatellite markers.

scientific article

Report on the forest trees workshop at the plant and animal genome conference

scientific article published on January 2003

Role of waterlogging-responsive genes in shaping interspecific differentiation between two sympatric oak species

scientific article

Seasonal variation in transcript accumulation in wood-forming tissues of maritime pine (Pinus pinaster Ait.) with emphasis on a cell wall glycine-rich protein.

scientific article published on 24 May 2003

Secretome of the free-living mycelium from the ectomycorrhizal basidiomycete Laccaria bicolor

scientific article published on 29 November 2011

Separation and characterization of needle and xylem maritime pine proteins

Separation and characterization of needle and xylem maritime pine proteins

scientific article published on 01 April 1999

Separation and characterization of needle and xylem maritime pine proteins

Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks

scientific article published on 25 March 2015

Soil water stress affects both cuticular wax content and cuticle-related gene expression in young saplings of maritime pine (Pinus pinaster Ait)

scientific article

The genetics of exapted resistance to two exotic pathogens in pedunculate oak

scientific article published on 11 November 2019

The genetics of water-use efficiency and its relation to growth in maritime pine

scientific article

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

scientific article

The proteome of maritime pine wood forming tissue

scientific article

Towards decoding the conifer giga-genome

scientific article published on 09 September 2012

Trade-offs and Trait Integration in Tree Phenotypes: Consequences for the Sustainable Use of Genetic Resources

scientific article published in 2024

Transcriptional analysis of differentially expressed genes in response to stem inclination in young seedlings of pine.

scientific article

Transcriptional changes in two types of pre-mycorrhizal roots and in ectomycorrhizas of oak microcuttings inoculated with Piloderma croceum.

scientific article published on 3 October 2006

Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing

scientific article

Transcriptome analysis of bud burst in sessile oak (Quercus petraea).

scientific article

Uniform selection as a primary force reducing population genetic differentiation of cavitation resistance across a species range

scientific article

Water-deficit-responsive proteins in maritime pine.

scientific article published on November 1998

Wood formation in trees.

scientific article

X-ray computed tomography to decipher the genetic architecture of tree branching traits: oak as a case study

scholarly article by Jialin Song et al published 14 December 2016 in Tree Genetics and Genomes

Paulina is supported by:

About Paulina

Help