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List of works by Jan Vrána

A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies

scientific article published on 5 April 2014

A chromosome conformation capture ordered sequence of the barley genome

scientific article

Advances in plant chromosome genomics

scientific article published on 07 January 2014

An Increasing Need for Productive and Stress Resilient Festulolium Amphiploids: What Can Be Learnt from the Stable Genomic Composition of Festuca pratensis subsp. apennina (De Not.) Hegi?

article

An advanced reference genome of Trifolium subterraneum L. reveals genes related to agronomic performance

scientific article published on 23 January 2017

Analysis and sorting of rye (Secale cereale L.) chromosomes using flow cytometry.

scientific article published in October 2003

BioNano genome mapping of individual chromosomes supports physical mapping and sequence assembly in complex plant genomes

scientific article published in July 2016

Challenges of flow-cytometric estimation of nuclear genome size in orchids, a plant group with both whole-genome and progressively partial endoreplication

scientific article

Chromosomal Allocation of DNA Sequences in Wheat Using Flow-Sorted Chromosomes

scientific article published on 01 January 2016

Chromosome sorting and PCR-based physical mapping in pea (Pisum sativum L.).

scientific article published on 01 January 2002

Chromosome-based survey sequencing reveals the genome organization of wild wheat progenitor Triticum dicoccoides

scientific article published on 13 June 2018

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

scientific article published on 18 March 2021

Chromosome-specific sequencing reveals an extensive dispensable genome component in wheat

scientific article

Chromosomes in the flow to simplify genome analysis

scientific article

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L

scientific article

Creation of a BAC resource to study the structure and evolution of the banana (Musa balbisiana) genome

scientific article published on 01 December 2004

Development of flow cytogenetics and physical genome mapping in chickpea (Cicer arietinum L.).

scientific article

Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat

scientific article

Dissecting the U, M, S and C genomes of wild relatives of bread wheat (Aegilops spp.) into chromosomes and exploring their synteny with wheat

scientific article published on 12 July 2016

Divergence between bread wheat and Triticum militinae in the powdery mildew resistance QPm.tut-4A locus and its implications for cloning of the resistance gene.

scientific article published on 7 December 2018

Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5M(g) of Aegilops geniculata

scientific article

Features of the organization of bread wheat chromosome 5BS based on physical mapping

scientific article published on 9 February 2018

Flow Analysis and Sorting of Plant Chromosomes.

scientific article published on 10 October 2016

Flow Sorting Plant Chromosomes

scientific article

Flow cytometric chromosome sorting from diploid progenitors of bread wheat, T. urartu, Ae. speltoides and Ae. tauschii

scientific article published on 20 February 2014

Flow cytometric chromosome sorting in plants: the next generation

scientific article published on 14 March 2012

Flow karyotyping and chromosome sorting in bread wheat ( Triticum aestivum L.).

scientific article

Flow sorting and sequencing meadow fescue chromosome 4F.

scientific article published on 4 October 2013

Flow sorting of C-genome chromosomes from wild relatives of wheat Aegilops markgrafii, Ae. triuncialis and Ae. cylindrica, and their molecular organization

scientific article published on 4 June 2015

Genomic imprinting mediates dosage compensation in a young plant XY system

scientific article published on 13 August 2018

Identification of Plant Nuclear Proteins Based on a Combination of Flow Sorting, SDS-PAGE, and LC-MS/MS Analysis

scientific article published in January 2018

Identification of Plet-1 as a specific marker of early thymic epithelial progenitor cells

scholarly article

Identification of a novel retrotransposon with sex chromosome-specific distribution in Silene latifolia

scientific article

Intact DNA purified from flow-sorted nuclei unlocks the potential of next-generation genome mapping and assembly in Solanum species

scientific article published on 10 April 2018

Integration of Genetic and Cytogenetic Maps and Identification of Sex Chromosome in Garden Asparagus ( L.)

scientific article published in 2018

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome

scientific article

Large-Scale Structural Variation Detection in Subterranean Clover Subtypes Using Optical Mapping

scientific article published on 17 July 2018

Localisation of DNA sequences on plant chromosomes using PRINS and C-PRINS

scientific article published on 01 January 2001

Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides

scientific article published on 18 June 2015

Multiple displacement amplification of the DNA from single flow-sorted plant chromosome

scientific article published on 24 September 2015

Nanog safeguards pluripotency and mediates germline development

scientific article (publication date: 20 December 2007)

Physical Map of the Short Arm of Bread Wheat Chromosome 3D.

scientific article published on July 2017

Pm21 from Haynaldia villosa Encodes a CC-NBS-LRR Protein Conferring Powdery Mildew Resistance in Wheat

scientific article published on 20 March 2018

Proteomic Analysis of Barley Cell Nuclei Purified by Flow Sorting

article

Rapid Gene Isolation Using MutChromSeq

scientific article published in January 2017

Rapid cloning of genes in hexaploid wheat using cultivar-specific long-range chromosome assembly

scientific article

Rapid gene isolation in barley and wheat by mutant chromosome sequencing

scientific article (publication date: 31 October 2016)

Reticulate evolution of the rye genome

scientific article published on 8 October 2013

Rht18 Semi-Dwarfism in Wheat is Due to Increased Expression of GA 2-oxidaseA9 and Lower GA Content

scientific article published on 15 March 2018

Rye B chromosomes encode a functional Argonaute-like protein with in vitro slicer activities similar to its A chromosome paralog

scientific article published on 28 July 2016

SNP Discovery for mapping alien introgressions in wheat

scientific article

Sequence divergence between spelt and common wheat

scientific article published on 9 February 2018

Sequencing chromosome 5D of Aegilops tauschii and comparison with its allopolyploid descendant bread wheat (Triticum aestivum).

scientific article published on 16 December 2014

Sequencing flow-sorted short arm of Haynaldia villosa chromosome 4V provides insights into its molecular structure and virtual gene order

scientific article published on 16 October 2017

Shifting the limits in wheat research and breeding using a fully annotated reference genome

scientific article

Syntenic relationships between the U and M genomes of Aegilops, wheat and the model species Brachypodium and rice as revealed by COS markers

scientific article

The Agropyron cristatum karyotype, chromosome structure and cross-genome homoeology as revealed by fluorescence in situ hybridization with tandem repeats and wheat single-gene probes

article

The Enigma of Progressively Partial Endoreplication: New Insights Provided by Flow Cytometry and Next-Generation Sequencing

scientific article published on 19 June 2016

The in silico identification and characterization of a bread wheat/Triticum militinae introgression line

scientific article published on 11 August 2016

The utility of flow sorting to identify chromosomes carrying a single copy transgene in wheat

scientific article published on 25 April 2016

Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat

scientific article published on 13 April 2018

UNcleProt (Universal Nuclear Protein database of barley): The first nuclear protein database that distinguishes proteins from different phases of the cell cycle

scientific article

Uncovering homeologous relationships between tetraploid Agropyron cristatum and bread wheat genomes using COS markers

scientific article published on 16 July 2019

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