List of works - Fernando Rojo

A Mutation in the C-terminal domain of the RNA polymerase alpha subunit that destabilizes the open complexes formed at the phage phi 29 late A3 promoter

scientific article

A complex genetic switch involving overlapping divergent promoters and DNA looping regulates expression of conjugation genes of a gram-positive plasmid

scientific article

A novel site-specific recombinase encoded by the Streptococcus pyogenes plasmid pSM19035

scientific article published on 01 April 1994

A positive feedback mechanism controls expression of AlkS, the transcriptional regulator of the Pseudomonas oleovorans alkane degradation pathway

scientific article published on 01 February 2000

Are nonlethal targets useful for developing novel antimicrobials?

scientific article published in June 2011

Bacteria Viability in Sol−Gel Materials Revisited: Cryo-SEM as a Suitable Tool To Study the Structural Integrity of Encapsulated Bacteria

article by María Luisa Ferrer et al published March 2006 in Chemistry of Materials

Bacteria incorporation in deep-eutectic solvents through freeze-drying

scientific article published in March 2010

Binding of phage phi29 protein p4 to the early A2c promoter: recruitment of a repressor by the RNA polymerase

scientific article published on 01 October 1998

Biocompatible MWCNT scaffolds for immobilization and proliferation of E. coli

Biocompatible Sol−Gel Route for Encapsulation of Living Bacteria in Organically Modified Silica Matrixes

Biofuels from microbes: a comprehensive view

scientific article (publication date: May 2008)

Carbon catabolite repression in Pseudomonas : optimizing metabolic versatility and interactions with the environment.

scientific article published on 10 March 2010

Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis

scientific article published in March 2004

Cohabitation of two different lexA regulons in Pseudomonas putida.

scientific article

Combining electrokinetic transport and bioremediation for enhanced removal of crude oil from contaminated marine sediments: Results of a long-term, mesocosm-scale experiment

scientific article published on 03 April 2019

Complex regulation of the synthesis of the compatible solute ectoine in the halophilic bacterium Chromohalobacter salexigens DSM 3043T.

scientific article published in September 2004

Controlled formation of the anhydrous polymorph of ciprofloxacin crystals embedded within chitosan scaffolds: study of the kinetic release dependence on crystal size

Deep eutectic solvent-assisted synthesis of biodegradable polyesters with antibacterial properties.

scientific article published on 15 July 2013

Degradation of alkanes by bacteria.

scientific article published on October 2009

Differential expression of the components of the two alkane hydroxylases from Pseudomonas aeruginosa

scientific article

Differential expression of the three Alcanivorax borkumensis SK2 genes coding for the P450 cytochromes involved in the assimilation of hydrocarbons

scientific article

Effect of Crc and Hfq proteins on the transcription, processing, and stability of the Pseudomonas putida CrcZ sRNA.

scientific article

Expression of the Pseudomonas putida OCT plasmid alkane degradation pathway is modulated by two different global control signals: evidence from continuous cultures

scientific article published on August 2003

Features of pseudomonads growing at low temperatures: another facet of their versatility

scientific article

Genomic analysis of the role of RNase R in the turnover of Pseudomonas putida mRNAs

scientific article published on 18 July 2008

Glass-(nAg, nCu) biocide coatings on ceramic oxide substrates

scientific article

Glucose uptake in Azotobacter vinelandii occurs through a GluP transporter that is under the control of the CbrA/CbrB and Hfq-Crc systems.

scientific article published on 12 April 2017

Green Synthesis of Hierarchically Structured Silver-Polymer Nanocomposites with Antibacterial Activity

scientific article published on 25 July 2016

Growth of Pseudomonas putida at low temperature: global transcriptomic and proteomic analyses

scientific article published on 5 January 2011

Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray.

scientific article

Hydrogel Scaffolds with Immobilized Bacteria for 3D Cultures

article

Inactivation of cytochrome o ubiquinol oxidase relieves catabolic repression of the Pseudomonas putida GPo1 alkane degradation pathway

scientific article published on July 2002

Inactivation of the Pseudomonas putida cytochrome o ubiquinol oxidase leads to a significant change in the transcriptome and to increased expression of the CIO and cbb3-1 terminal oxidases

scientific article published on 01 October 2006

Influence of the Crc global regulator on substrate uptake rates and the distribution of metabolic fluxes in Pseudomonas putida KT2440 growing in a complete medium

scientific article published on 18 October 2019

Influence of the Crc regulator on the hierarchical use of carbon sources from a complete medium in Pseudomonas.

scientific article published on 16 November 2015

Influence of the Hfq and Crc global regulators on the control of iron homeostasis in Pseudomonas putida

scientific article published on 05 August 2018

Levels and activity of the Pseudomonas putida global regulatory protein Crc vary according to growth conditions

scientific article published on June 2005

Marine hydrocarbonoclastic bacteria as whole-cell biosensors for n-alkanes

scientific article published on 15 April 2015

Mechanism of calcium lixiviation in soda-lime glasses with a strong biocide activity

Metabolic regulation of antibiotic resistance.

scientific article published on 28 June 2011

Mutational analysis of a site-specific recombinase: characterization of the catalytic and dimerization domains of the beta recombinase of pSM19035.

scientific article published in August 1997

Nanocomposites of silver nanoparticles embedded in glass nanofibres obtained by laser spinning

scientific article

Novel regulatory mechanism of establishment genes of conjugative plasmids

article

Overexpression of the multidrug efflux pumps MexCD-OprJ and MexEF-OprN is associated with a reduction of type III secretion in Pseudomonas aeruginosa

scientific article published on February 2005

Overproduction of the multidrug efflux pump MexEF-OprN does not impair Pseudomonas aeruginosa fitness in competition tests, but produces specific changes in bacterial regulatory networks.

scientific article published on 15 March 2012

Phage phi 29 regulatory protein p4 stabilizes the binding of the RNA polymerase to the late promoter in a process involving direct protein-protein contacts ⬇️

scientific article published on December 1, 1992

Plasmid rolling circle replication and its control.

scientific article published on August 1995

Poly(vinyl alcohol) Scaffolds with Tailored Morphologies for Drug Delivery and Controlled Release

Population structure of Pseudomonas aeruginosa from five Mediterranean countries: evidence for frequent recombination and epidemic occurrence of CC235.

scientific article

Pseudomonas putida KT2440 metabolism undergoes sequential modifications during exponential growth in a complete medium as compounds are gradually consumed

scientific article published on 21 April 2019

Pseudomonas putida growing at low temperature shows increased levels of CrcZ and CrcY sRNAs, leading to reduced Crc-dependent catabolite repression

scientific article published on 23 February 2012

Purification of the beta product encoded by the Streptococcus pyogenes plasmid pSM19035. A putative DNA recombinase required to resolve plasmid oligomers.

scientific article

Requirement for an A-tract structure at the binding site of phage phi 29 transcriptional activator

scientific article published on 01 March 1994

Residues of the Bacillus subtilis phage phi 29 transcriptional activator required both to interact with RNA polymerase and to activate transcription

scientific article published on 01 October 1993

Role of the crc gene in catabolic repression of the Pseudomonas putida GPo1 alkane degradation pathway.

scientific article published on November 2001

Short N-terminal deletions in the phage phi 29 transcriptional activator protein impair its DNA-binding ability

scientific article published on 01 November 1990

Site-specific recombination by the beta protein from the streptococcal plasmid pSM19035: minimal recombination sequences and crossing over site

scientific article published on July 1996

Site-specific recombination in gram-positive theta-replicating plasmids

scientific article

Specificity at the end of the tunnel: understanding substrate length discrimination by the AlkB alkane hydroxylase

scientific article published in January 2005

Structural and functional analysis of SmeT, the repressor of the Stenotrophomonas maltophilia multidrug efflux pump SmeDEF

scientific article

Structure of Pseudomonas aeruginosa populations analyzed by single nucleotide polymorphism and pulsed-field gel electrophoresis genotyping. ⬇️

scientific article

Substitution of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit by that from Bacillus subtilis makes the enzyme responsive to a Bacillus subtilis transcriptional activator

scientific article published on 01 January 1998

Synapsis and strand exchange in the resolution and DNA inversion reactions catalysed by the beta recombinase

scientific article

Taxonomic and functional metagenomic profiling of the microbial community in the anoxic sediment of a sub-saline shallow lake (Laguna de Carrizo, Central Spain).

scientific article

The Bacillus subtilis chromatin-associated protein Hbsu is involved in DNA repair and recombination.

scientific article

The Bacillus subtilis histone-like protein Hbsu is required for DNA resolution and DNA inversion mediated by the beta recombinase of plasmid pSM19035.

scientific article published in February 1995

The Crc and Hfq proteins ofPseudomonas putidacooperate in catabolite repression and formation of ribonucleic acid complexes with specific target motifs

scientific article published on 02 June 2014

The Crc global regulator inhibits the Pseudomonas putida pWW0 toluene/xylene assimilation pathway by repressing the translation of regulatory and structural genes.

scientific article published on 07 June 2010

The Crc protein inhibits the production of polyhydroxyalkanoates in Pseudomonas putida under balanced carbon/nitrogen growth conditions

scientific article published on 06 November 2013

The Crc/CrcZ-CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism in Pseudomonas putida

scientific article published on 25 February 2015

The Mfd protein of Bacillus subtilis 168 is involved in both transcription-coupled DNA repair and DNA recombination

scientific article published on February 1996

The Pseudomonas putida Crc global regulator controls the hierarchical assimilation of amino acids in a complete medium: evidence from proteomic and genomic analyses.

scientific article

The Pseudomonas putida Crc global regulator is an RNA binding protein that inhibits translation of the AlkS transcriptional regulator.

scientific article

The Pseudomonas putida HskA hybrid sensor kinase controls the composition of the electron transport chain

scientific article published on 6 December 2012

The Pseudomonas putida HskA hybrid sensor kinase responds to redox signals and contributes to the adaptation of the electron transport chain composition in response to oxygen availability.

scientific article

The coordinate regulation of multiple terminal oxidases by the Pseudomonas putida ANR global regulator.

scientific article

The global regulator Crc modulates metabolism, susceptibility to antibiotics and virulence in Pseudomonas aeruginosa

scientific journal article

The phi29 transcriptional regulator contacts the nucleoid protein p6 to organize a repression complex

scientific article

The prokaryotic beta-recombinase catalyzes site-specific recombination in mammalian cells

scientific article published on March 1999

The role of environmental biotechnology in exploring, exploiting, monitoring, preserving, protecting and decontaminating the marine environment

scientific article published on 16 April 2014

The switch from early to late transcription in phage GA-1: characterization of the regulatory protein p4G.

scientific article published on July 1999

The target for the Pseudomonas putida Crc global regulator in the benzoate degradation pathway is the BenR transcriptional regulator

scientific article published on 21 December 2007

The translational repressor Crc controls the Pseudomonas putida benzoate and alkane catabolic pathways using a multi-tier regulation strategy.

scientific article published on 28 August 2012

Traits allowing resistance to organic solvents in Pseudomonas.

scientific article

Transcription activation by phage phi29 protein p4 is mediated by interaction with the alpha subunit of Bacillus subtilis RNA polymerase.

scientific article published on June 1996

Transcription regulation in Bacillus subtilis phage phi 29: expression of the viral promoters throughout the infection cycle

scientific article published on 01 February 1995

Transcriptional activator of phage phi 29 late promoter: mapping of residues involved in interaction with RNA polymerase and in DNA bending

scientific article published on 01 April 1996

Transcriptional and translational control through the 5′-leader region of thedmpRmaster regulatory gene of phenol metabolism

article

Two small RNAs, CrcY and CrcZ, act in concert to sequester the Crc global regulator in Pseudomonas putida, modulating catabolite repression

scientific article published on 20 November 2011

beta Recombinase catalyzes inversion and resolution between two inversely oriented six sites on a supercoiled DNA substrate and only inversion on relaxed or linear substrates

scientific article published on 01 May 1998

List of works by Fernando Rojo

A Mutation in the C-terminal domain of the RNA polymerase alpha subunit that destabilizes the open complexes formed at the phage phi 29 late A3 promoter

A complex genetic switch involving overlapping divergent promoters and DNA looping regulates expression of conjugation genes of a gram-positive plasmid

A novel site-specific recombinase encoded by the Streptococcus pyogenes plasmid pSM19035

A positive feedback mechanism controls expression of AlkS, the transcriptional regulator of the Pseudomonas oleovorans alkane degradation pathway

Are nonlethal targets useful for developing novel antimicrobials?

Bacteria Viability in Sol−Gel Materials Revisited: Cryo-SEM as a Suitable Tool To Study the Structural Integrity of Encapsulated Bacteria

Bacteria incorporation in deep-eutectic solvents through freeze-drying

Binding of phage phi29 protein p4 to the early A2c promoter: recruitment of a repressor by the RNA polymerase

Biocompatible MWCNT scaffolds for immobilization and proliferation of E. coli

Biocompatible Sol−Gel Route for Encapsulation of Living Bacteria in Organically Modified Silica Matrixes

Biofuels from microbes: a comprehensive view

Carbon catabolite repression in Pseudomonas : optimizing metabolic versatility and interactions with the environment.

Characterization of two alkane hydroxylase genes from the marine hydrocarbonoclastic bacterium Alcanivorax borkumensis

Cohabitation of two different lexA regulons in Pseudomonas putida.

Combining electrokinetic transport and bioremediation for enhanced removal of crude oil from contaminated marine sediments: Results of a long-term, mesocosm-scale experiment

Complex regulation of the synthesis of the compatible solute ectoine in the halophilic bacterium Chromohalobacter salexigens DSM 3043T.

Controlled formation of the anhydrous polymorph of ciprofloxacin crystals embedded within chitosan scaffolds: study of the kinetic release dependence on crystal size

Deep eutectic solvent-assisted synthesis of biodegradable polyesters with antibacterial properties.

Degradation of alkanes by bacteria.

Differential expression of the components of the two alkane hydroxylases from Pseudomonas aeruginosa

Differential expression of the three Alcanivorax borkumensis SK2 genes coding for the P450 cytochromes involved in the assimilation of hydrocarbons

Effect of Crc and Hfq proteins on the transcription, processing, and stability of the Pseudomonas putida CrcZ sRNA.

Expression of the Pseudomonas putida OCT plasmid alkane degradation pathway is modulated by two different global control signals: evidence from continuous cultures

Features of pseudomonads growing at low temperatures: another facet of their versatility

Genomic analysis of the role of RNase R in the turnover of Pseudomonas putida mRNAs

Glass-(nAg, nCu) biocide coatings on ceramic oxide substrates

Glucose uptake in Azotobacter vinelandii occurs through a GluP transporter that is under the control of the CbrA/CbrB and Hfq-Crc systems.

Green Synthesis of Hierarchically Structured Silver-Polymer Nanocomposites with Antibacterial Activity

Growth of Pseudomonas putida at low temperature: global transcriptomic and proteomic analyses

Growth phase-dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome-wide DNA microarray.

Hydrogel Scaffolds with Immobilized Bacteria for 3D Cultures

Inactivation of cytochrome o ubiquinol oxidase relieves catabolic repression of the Pseudomonas putida GPo1 alkane degradation pathway

Inactivation of the Pseudomonas putida cytochrome o ubiquinol oxidase leads to a significant change in the transcriptome and to increased expression of the CIO and cbb3-1 terminal oxidases

Influence of the Crc global regulator on substrate uptake rates and the distribution of metabolic fluxes in Pseudomonas putida KT2440 growing in a complete medium

Influence of the Crc regulator on the hierarchical use of carbon sources from a complete medium in Pseudomonas.

Influence of the Hfq and Crc global regulators on the control of iron homeostasis in Pseudomonas putida

Levels and activity of the Pseudomonas putida global regulatory protein Crc vary according to growth conditions

Marine hydrocarbonoclastic bacteria as whole-cell biosensors for n-alkanes

Mechanism of calcium lixiviation in soda-lime glasses with a strong biocide activity

Metabolic regulation of antibiotic resistance.

Mutational analysis of a site-specific recombinase: characterization of the catalytic and dimerization domains of the beta recombinase of pSM19035.

Nanocomposites of silver nanoparticles embedded in glass nanofibres obtained by laser spinning

Novel regulatory mechanism of establishment genes of conjugative plasmids

Overexpression of the multidrug efflux pumps MexCD-OprJ and MexEF-OprN is associated with a reduction of type III secretion in Pseudomonas aeruginosa

Overproduction of the multidrug efflux pump MexEF-OprN does not impair Pseudomonas aeruginosa fitness in competition tests, but produces specific changes in bacterial regulatory networks.

Phage phi 29 regulatory protein p4 stabilizes the binding of the RNA polymerase to the late promoter in a process involving direct protein-protein contacts ⬇️

Plasmid rolling circle replication and its control.

Poly(vinyl alcohol) Scaffolds with Tailored Morphologies for Drug Delivery and Controlled Release

Population structure of Pseudomonas aeruginosa from five Mediterranean countries: evidence for frequent recombination and epidemic occurrence of CC235.

Pseudomonas putida KT2440 metabolism undergoes sequential modifications during exponential growth in a complete medium as compounds are gradually consumed

Pseudomonas putida growing at low temperature shows increased levels of CrcZ and CrcY sRNAs, leading to reduced Crc-dependent catabolite repression

Purification of the beta product encoded by the Streptococcus pyogenes plasmid pSM19035. A putative DNA recombinase required to resolve plasmid oligomers.

Requirement for an A-tract structure at the binding site of phage phi 29 transcriptional activator

Residues of the Bacillus subtilis phage phi 29 transcriptional activator required both to interact with RNA polymerase and to activate transcription

Role of the crc gene in catabolic repression of the Pseudomonas putida GPo1 alkane degradation pathway.

Short N-terminal deletions in the phage phi 29 transcriptional activator protein impair its DNA-binding ability

Site-specific recombination by the beta protein from the streptococcal plasmid pSM19035: minimal recombination sequences and crossing over site

Site-specific recombination in gram-positive theta-replicating plasmids

Specificity at the end of the tunnel: understanding substrate length discrimination by the AlkB alkane hydroxylase

Structural and functional analysis of SmeT, the repressor of the Stenotrophomonas maltophilia multidrug efflux pump SmeDEF

Structure of Pseudomonas aeruginosa populations analyzed by single nucleotide polymorphism and pulsed-field gel electrophoresis genotyping. ⬇️

Substitution of the C-terminal domain of the Escherichia coli RNA polymerase alpha subunit by that from Bacillus subtilis makes the enzyme responsive to a Bacillus subtilis transcriptional activator

Synapsis and strand exchange in the resolution and DNA inversion reactions catalysed by the beta recombinase

Taxonomic and functional metagenomic profiling of the microbial community in the anoxic sediment of a sub-saline shallow lake (Laguna de Carrizo, Central Spain).

The Bacillus subtilis chromatin-associated protein Hbsu is involved in DNA repair and recombination.

The Bacillus subtilis histone-like protein Hbsu is required for DNA resolution and DNA inversion mediated by the beta recombinase of plasmid pSM19035.

The Crc and Hfq proteins ofPseudomonas putidacooperate in catabolite repression and formation of ribonucleic acid complexes with specific target motifs

The Crc global regulator inhibits the Pseudomonas putida pWW0 toluene/xylene assimilation pathway by repressing the translation of regulatory and structural genes.

The Crc protein inhibits the production of polyhydroxyalkanoates in Pseudomonas putida under balanced carbon/nitrogen growth conditions

The Crc/CrcZ-CrcY global regulatory system helps the integration of gluconeogenic and glycolytic metabolism in Pseudomonas putida

The Mfd protein of Bacillus subtilis 168 is involved in both transcription-coupled DNA repair and DNA recombination

The Pseudomonas putida Crc global regulator controls the hierarchical assimilation of amino acids in a complete medium: evidence from proteomic and genomic analyses.

The Pseudomonas putida Crc global regulator is an RNA binding protein that inhibits translation of the AlkS transcriptional regulator.

The Pseudomonas putida HskA hybrid sensor kinase controls the composition of the electron transport chain

The Pseudomonas putida HskA hybrid sensor kinase responds to redox signals and contributes to the adaptation of the electron transport chain composition in response to oxygen availability.

The coordinate regulation of multiple terminal oxidases by the Pseudomonas putida ANR global regulator.

The global regulator Crc modulates metabolism, susceptibility to antibiotics and virulence in Pseudomonas aeruginosa

The phi29 transcriptional regulator contacts the nucleoid protein p6 to organize a repression complex

The prokaryotic beta-recombinase catalyzes site-specific recombination in mammalian cells