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List of works by Pingzhao Hu

A Novel Graph-based Algorithm to Infer Recurrent Copy Number Variations in Cancer

scientific article published on 9 October 2016

A census of human soluble protein complexes

scientific article

A deep neural network based regression model for triglyceride concentrations prediction using epigenome-wide DNA methylation profiles

scientific article published on 17 September 2018

A genotype resource for postmortem brain samples from the Autism Tissue Program

scientific article

A high-resolution copy-number variation resource for clinical and population genetics

scientific article published on 11 December 2014

A machine learning-based clinical tool for diagnosing myopathy using multi-cohort microarray expression profiles

scientific article published on 30 November 2020

A pathway-based association analysis model using common and rare variants.

scientific article

An OpenMP-based tool for finding longest common subsequence in bioinformatics

scientific article published on 11 April 2019

An integrative deep learning framework for classifying molecular subtypes of breast cancer

scientific article published on 11 August 2020

An integrative network-based approach to identify novel disease genes and pathways: a case study in the context of inflammatory bowel disease

article

Association Analysis of Deep Genomic Features Extracted by Denoising Autoencoders in Breast Cancer.

scientific article

Association Analysis of Somatic Copy Number Alteration Burden With Breast Cancer Survival

scientific article published on 01 October 2018

Associations between genetic variants in immunoregulatory genes and risk of non-Hodgkin lymphoma in a Chinese population.

scientific article published on 02 January 2017

Automated Counting of Cancer Cells by Ensembling Deep Features

scientific article published on 02 September 2019

Brain-expressed exons under purifying selection are enriched for de novo mutations in autism spectrum disorder

scientific article

Chlamydia trachomatis ChxR is a transcriptional regulator of virulence factors that function in in vivo host-pathogen interactions.

scientific article published on 22 March 2017

Chlamydial Protease-Like Activity Factor and Type III Secreted Effectors Cooperate in Inhibition of p65 Nuclear Translocation

scientific article published on 27 September 2016

Chromatin organization of transcribed genes in chicken polychromatic erythrocytes

scientific article published on 08 March 2019

Computational drug repurposing for inflammatory bowel disease using genetic information

scientific article published on 07 January 2019

Computational prediction of cancer-gene function

scientific article published on 14 December 2006

Copy number variation-based gene set analysis reveals cytokine signalling pathways associated with psychiatric comorbidity in patients with inflammatory bowel disease

scientific article published on 07 May 2019

DJ-1/PARK7 Impairs Bacterial Clearance in Sepsis.

scientific article published on 13 October 2016

DTF: Deep Tensor Factorization for Predicting Anticancer Drug Synergy

scientific article published on 05 May 2020

Data integration in genetics and genomics: methods and challenges

scientific article (publication date: 12 January 2009)

Deep graph embedding for prioritizing synergistic anticancer drug combinations

scientific article published on 15 February 2020

Deep learning-driven prediction of drug mechanism of action from large-scale chemical-genetic interaction profiles

scientific article published on 12 March 2022

Differential gene profiling in acute lung injury identifies injury-specific gene expression.

scientific article published on March 2008

Discovering MicroRNA-Regulatory Modules in Multi-Dimensional Cancer Genomic Data: A Survey of Computational Methods

scientific article

Dynamic pathway analysis of genes associated with blood pressure using whole genome sequence data

scientific article

Epigenetic Profiling in Severe Sepsis: A Pilot Study of DNA Methylation Profiles in Critical Illness

scientific article published on 11 December 2019

Epigenetics of Sepsis

scientific article published on 20 February 2020

Epigenome-wide DNA methylation profiling of periprostatic adipose tissue in prostate cancer patients with excess adiposity-a pilot study.

scientific article

Evidence of linkage to chromosome 1 for early age of onset of rheumatoid arthritis and HLA marker DRB1 genotype in NARAC data

scientific article

Gene and miRNA expression profiles in autism spectrum disorders

scientific article published on 21 September 2010

Gene expression changes associated with resistance to intravenous corticosteroid therapy in children with severe ulcerative colitis

scientific article

Gene expression in "young adult type" breast cancer: a retrospective analysis.

scientific article

Gene expression using microarrays in transplant recipients at risk of EBV lymphoproliferation after organ transplantation: preliminary proof-of-concept.

scientific article

Genome-wide analysis identifies rare copy number variations associated with inflammatory bowel disease.

scientific article published on 11 June 2019

Genome-wide association study of bipolar disorder in Canadian and UK populations corroborates disease loci including SYNE1 and CSMD1

scientific article

Genome-wide association study of type 2 diabetes in a sample from Mexico City and a meta-analysis of a Mexican-American sample from Starr County, Texas

scientific article published on 15 May 2011

Genome-wide copy number variant data for inflammatory bowel disease in a caucasian population

scientific article published on 02 July 2019

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins

scientific article

Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling

scientific journal article

IL-23R polymorphisms in patients with ankylosing spondylitis in Korea.

scientific article published on 15 April 2009

Identification of genomic signatures in circulating tumor cells from breast cancer

scientific article published on 12 January 2015

Identifying cis- and trans-acting single-nucleotide polymorphisms controlling lymphocyte gene expression in humans

scientific article

Identity-by-descent mapping for diastolic blood pressure in unrelated Mexican Americans

scientific article

Impact of normalization and filtering on linkage analysis of gene expression data

scientific article

Integrative Analysis Reveals Subtype-Specific Regulatory Determinants in Triple Negative Breast Cancer

scientific article published on 10 April 2019

Integrative Data Augmentation with U-Net Segmentation Masks Improves Detection of Lymph Node Metastases in Breast Cancer Patients

scientific article published on 12 October 2020

Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models

scientific article

Isolation and characterization of a new basal-like luminal progenitor in human breast tissue

scientific article published on 23 August 2019

Long Non-Coding RNA H19 Acts as an Estrogen Receptor Modulator that is Required for Endocrine Therapy Resistance in ER+ Breast Cancer Cells

scientific article published on 29 November 2018

Markers of survival and metastatic potential in childhood CNS primitive neuro-ectodermal brain tumours: an integrative genomic analysis

scientific article published on 11 June 2012

Mesenchymal Stem/Stromal Cells Increase Cardiac MIR-187-3P Expression in Polymicrobial Animal Model of Sepsis

scientific article published on 29 December 2020

Metaphyseal dysplasia with maxillary hypoplasia and brachydactyly is caused by a duplication in RUNX2.

scientific article published on 3 January 2013

MicroRNA-144 is a circulating effector of remote ischemic preconditioning

scientific article published on 25 July 2014

Microarray Meta-Analysis and Cross-Platform Normalization: Integrative Genomics for Robust Biomarker Discovery

scientific article published on 21 August 2015

Microarray meta-analysis identifies acute lung injury biomarkers in donor lungs that predict development of primary graft failure in recipients

scientific article

Modeling Gene-Environment Interaction for the Risk of Non-hodgkin Lymphoma

article

NADPH oxidase complex and IBD candidate gene studies: identification of a rare variant in NCF2 that results in reduced binding to RAC2

scientific article (publication date: July 2012)

Network analysis of transcriptional responses induced by mesenchymal stem cell treatment of experimental sepsis.

scientific article published in November 2012

Neuregulin 1-alpha regulates phosphorylation, acetylation, and alternative splicing in lymphoblastoid cells

scientific article published on 20 July 2013

Obesity and prostate cancer: gene expression signature of human periprostatic adipose tissue.

scientific article

Patch-based deep learning models for breast mammographic mass classification

scientific article published on 07 November 2023

Pathway-based analysis of a genome-wide case-control association study of rheumatoid arthritis.

scientific article

Pathway-based joint effects analysis of rare genetic variants using Genetic Analysis Workshop 17 exon sequence data ⬇️

scientific article published on November 29, 2011

Polygenic risk and causal inference of psychiatric comorbidity in inflammatory bowel disease among patients with European ancestry

scientific article published in 2022

Predicting drug-target interaction network using deep learning model

scientific article published on 25 March 2019

Predicting protein functions by relaxation labelling protein interaction network

scientific article

Prenatal exposure to maternal cigarette smoking and DNA methylation: epigenome-wide association in a discovery sample of adolescents and replication in an independent cohort at birth through 17 years of age.

scientific article

Prkar1a is an osteosarcoma tumor suppressor that defines a molecular subclass in mice

scientific article

Proteomic Approaches to Defining Remission and the Risk of Relapse in Rheumatoid Arthritis

scientific article published on 18 November 2021

RNA-Seq analysis of the parietal cortex in Alzheimer's disease reveals alternatively spliced isoforms related to lipid metabolism

scientific article published on 07 January 2013

Ras Signaling Is a Key Determinant for Metastatic Dissemination and Poor Survival of Luminal Breast Cancer Patients.

scientific article published on 23 September 2015

Recurrent copy number alterations in young women with breast cancer.

scientific article published on 29 January 2018

SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data

scientific article

Salutary effect of resveratrol on sepsis-induced myocardial depression

scientific article published on June 2012

Self-supervised deep learning model for COVID-19 lung CT image segmentation highlighting putative causal relationship among age, underlying disease and COVID-19

scientific article published in 2021

Sex, age and generation effects on genome-wide linkage analysis of gene expression in transformed lymphoblasts.

scientific article

Tests for differential gene expression using weights in oligonucleotide microarray experiments

scientific article published on 22 February 2006

The Histone Methyltransferase Enzyme Enhancer of Zeste Homolog 2 Protects against Podocyte Oxidative Stress and Renal Injury in Diabetes

scientific article

The genetic diversity of Epstein-Barr virus in the setting of transplantation relative to non-transplant settings: A feasibility study.

scientific article published on 18 November 2015

Tightly integrated multiomics-based deep tensor survival model for time-to-event prediction

scientific article published in 2022

Transcriptomic analysis of dystrophin RNAi knockdown reveals a central role for dystrophin in muscle differentiation and contractile apparatus organization

scientific article

Transcriptomic analysis reveals abnormal muscle repair and remodeling in survivors of critical illness with sustained weakness

scientific article published on 14 July 2016

Tumor-Infiltrating CD8 T Cells Predict Clinical Breast Cancer Outcomes in Young Women

scientific article published on 26 April 2020

Using a higher criticism statistic to detect modest effects in a genome-wide study of rheumatoid arthritis.

scientific article

Using the ratio of means as the effect size measure in combining results of microarray experiments.

scientific article

YOLO-LOGO: A transformer-based YOLO segmentation model for breast mass detection and segmentation in digital mammograms

scientific article published on 23 May 2022

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