List of works - Remo Sanges

A locus on mouse chromosome 2 is involved in susceptibility to congenital hypothyroidism and contains an essential gene expressed in thyroid

scientific journal article

Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs.

scientific article published on 19 February 2015

Case Report: Whole Exome Sequencing Revealed Disease-Causing Variants in Two Genes in a Patient With Autism Spectrum Disorder, Intellectual Disability, Hyperactivity, Sleep and Gastrointestinal Disturbances

publication published on 18 February 2021

Characterization of the intronic portion of cadherin superfamily members, common cancer orchestrators

scientific article published on 8 February 2012

ClusterScan: simple and generalistic identification of genomic clusters

scientific article published on 01 November 2018

Concordant morphologic and gene expression data show that a vaccine halts HER-2/neu preneoplastic lesions ⬇️

scientific article

Concordant morphologic and gene expression data show that a vaccine halts HER-2/neu preneoplastic lesions

article

De Novo Transcriptome Assembly and Gene Expression Profiling of the Copepod Calanus helgolandicus Feeding on the PUA-Producing Diatom Skeletonema marinoi

scientific article published on 27 July 2020

De novo assembly and transcriptome analysis of the Mediterranean fruit fly Ceratitis capitata early embryos

scientific article

De novo assembly of a transcriptome from the eggs and early embryos of Astropecten aranciacus

scientific article published on 5 September 2017

Diatom flagellar genes and their expression during sexual reproduction in Leptocylindrus danicus.

scientific article published on 23 October 2017

Distribution, Community Composition, and Potential Metabolic Activity of Bacterioplankton in an Urbanized Mediterranean Sea Coastal Zone.

scientific article

Erratum to: In vivo role of different domains and of phosphorylation in the transcription factor Nkx2-1.

scientific article published on 23 August 2016

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

scientific article published on 16 January 2017

Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements.

scientific article

Exploratory analysis of transposable elements expression in the C. elegans early embryo

scientific article published on 22 November 2019

Fibroblast growth factor signalling controls nervous system patterning and pigment cell formation in Ciona intestinalis

scientific article published on 5 September 2014

Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom.

scientific article published on 21 April 2017

Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus

scientific article published on October 2010

Genome-wide mapping of Myc binding and gene regulation in serum-stimulated fibroblasts.

scientific article published on 22 August 2011

Genomewide transcriptional reprogramming in the seagrass Cymodocea nodosa under experimental ocean acidification

scientific article

Genomics and transcriptomics to unravel sex determination pathway and its evolution in sand flies

Germline CDH1 deletions in hereditary diffuse gastric cancer families

scientific article published on 24 January 2009

Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi.

scientific article published on 29 March 2018

Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development

scientific article published on 7 February 2013

Identification and Expression of Protocadherin Gene Family in

article

Identification of LINE retrotransposons and long non-coding RNAs expressed in the octopus brain

scientific article published on 18 May 2022

Identification of microRNA-regulated gene networks by expression analysis of target genes

scientific article

Identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudo-nitzschia multistriata and Seminavis robusta.

scientific article published on 14 November 2015

Impact of polymorphic transposable elements on transcription in lymphoblastoid cell lines from public data

scientific article published on 22 November 2019

In vivo role of different domains and of phosphorylation in the transcription factor Nkx2-1 ⬇️

scientific article published on February 23, 2011

Insights into the transcriptome of the marine copepod Calanus helgolandicus feeding on the oxylipin-producing diatom Skeletonema marinoi.

scientific article

Intraspecific Diversity in the Cold Stress Response of Transposable Elements in the Diatom Leptocylindrus aporus

scientific article published on 20 December 2019

MRP3 is a sex determining gene in the diatom Pseudo-nitzschia multistriata

scientific article published in Nature Communications

Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions

scientific article

Meta-omics reveals genetic flexibility of diatom nitrogen transporters in response to environmental changes

scientific article published on 01 July 2019

Multisignal control of expression of the LHCX protein family in the marine diatom Phaeodactylum tricornutum.

scientific article published on 25 May 2016

Mutant SOD1 and mitochondrial damage alter expression and splicing of genes controlling neuritogenesis in models of neurodegeneration.

scientific article published on 25 January 2011

On the genome base composition of teleosts: the effect of environment and lifestyle

scientific article

Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements

scientific article

Response of the seagrass Posidonia oceanica to different light environments: Insights from a combined molecular and photo-physiological study

scientific article published on August 2014

SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation

scientific article

Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage

scientific article published on January 2006

Synechococcus: 3 billion years of global dominance

scientific article

Targeted transgene integration overcomes variability of position effects in zebrafish

scientific article published on February 2014

The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish

scientific article

The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome

scientific article published on 15 September 2016

The UniTrap resource: tools for the biologist enabling optimized use of gene trap clones.

scientific article published on 16 October 2007

The combination of transcriptomics and informatics identifies pathways targeted by miR-204 during neurogenesis and axon guidance.

scientific article published on 3 June 2014

The survey and reference assisted assembly of the Octopus vulgaris genome

scientific article published on 01 April 2019

The upstream regulatory sequence of the light harvesting complex Lhcf2 gene of the marine diatom Phaeodactylum tricornutum enhances transcription in an orientation- and distance-independent fashion

scientific article published on 25 June 2015

Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse

scientific article published on 10 September 2017

Tissue-specific transcriptomic profiling provides new insights into the reproductive ecology and biology of the iconic seagrass species Posidonia oceanica

scientific article

Trade-off between sex and growth in diatoms: Molecular mechanisms and demographic implications

scientific article published on 19 January 2022

Transcription initiation arising from E-cadherin/CDH1 intron2: a novel protein isoform that increases gastric cancer cell invasion and angiogenesis

scientific article

Transcriptome sequencing of three Pseudo-nitzschia species reveals comparable gene sets and the presence of Nitric Oxide Synthase genes in diatoms.

scientific article

oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language

scientific article published on 17 September 2007

List of works by Remo Sanges

A locus on mouse chromosome 2 is involved in susceptibility to congenital hypothyroidism and contains an essential gene expressed in thyroid

Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs.

Case Report: Whole Exome Sequencing Revealed Disease-Causing Variants in Two Genes in a Patient With Autism Spectrum Disorder, Intellectual Disability, Hyperactivity, Sleep and Gastrointestinal Disturbances

Characterization of the intronic portion of cadherin superfamily members, common cancer orchestrators

ClusterScan: simple and generalistic identification of genomic clusters

Concordant morphologic and gene expression data show that a vaccine halts HER-2/neu preneoplastic lesions ⬇️

Concordant morphologic and gene expression data show that a vaccine halts HER-2/neu preneoplastic lesions

De Novo Transcriptome Assembly and Gene Expression Profiling of the Copepod Calanus helgolandicus Feeding on the PUA-Producing Diatom Skeletonema marinoi

De novo assembly and transcriptome analysis of the Mediterranean fruit fly Ceratitis capitata early embryos

De novo assembly of a transcriptome from the eggs and early embryos of Astropecten aranciacus

Diatom flagellar genes and their expression during sexual reproduction in Leptocylindrus danicus.

Distribution, Community Composition, and Potential Metabolic Activity of Bacterioplankton in an Urbanized Mediterranean Sea Coastal Zone.

Erratum to: In vivo role of different domains and of phosphorylation in the transcription factor Nkx2-1.

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements.

Exploratory analysis of transposable elements expression in the C. elegans early embryo

Fibroblast growth factor signalling controls nervous system patterning and pigment cell formation in Ciona intestinalis

Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom.

Gene expression analysis of the emergence of epileptiform activity after focal injection of kainic acid into mouse hippocampus

Genome-wide mapping of Myc binding and gene regulation in serum-stimulated fibroblasts.

Genomewide transcriptional reprogramming in the seagrass Cymodocea nodosa under experimental ocean acidification

Genomics and transcriptomics to unravel sex determination pathway and its evolution in sand flies

Germline CDH1 deletions in hereditary diffuse gastric cancer families

Grazer-induced transcriptomic and metabolomic response of the chain-forming diatom Skeletonema marinoi.

Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development

Identification and Expression of Protocadherin Gene Family in

Identification of LINE retrotransposons and long non-coding RNAs expressed in the octopus brain

Identification of microRNA-regulated gene networks by expression analysis of target genes

Identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudo-nitzschia multistriata and Seminavis robusta.

Impact of polymorphic transposable elements on transcription in lymphoblastoid cell lines from public data

In vivo role of different domains and of phosphorylation in the transcription factor Nkx2-1 ⬇️

Insights into the transcriptome of the marine copepod Calanus helgolandicus feeding on the oxylipin-producing diatom Skeletonema marinoi.

Intraspecific Diversity in the Cold Stress Response of Transposable Elements in the Diatom Leptocylindrus aporus

MRP3 is a sex determining gene in the diatom Pseudo-nitzschia multistriata

Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions

Meta-omics reveals genetic flexibility of diatom nitrogen transporters in response to environmental changes

Multisignal control of expression of the LHCX protein family in the marine diatom Phaeodactylum tricornutum.

Mutant SOD1 and mitochondrial damage alter expression and splicing of genes controlling neuritogenesis in models of neurodegeneration.

On the genome base composition of teleosts: the effect of environment and lifestyle

Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements

Response of the seagrass Posidonia oceanica to different light environments: Insights from a combined molecular and photo-physiological study

SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation

Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage

Synechococcus: 3 billion years of global dominance

Targeted transgene integration overcomes variability of position effects in zebrafish

The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish

The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome

The UniTrap resource: tools for the biologist enabling optimized use of gene trap clones.

The combination of transcriptomics and informatics identifies pathways targeted by miR-204 during neurogenesis and axon guidance.

The survey and reference assisted assembly of the Octopus vulgaris genome

The upstream regulatory sequence of the light harvesting complex Lhcf2 gene of the marine diatom Phaeodactylum tricornutum enhances transcription in an orientation- and distance-independent fashion

Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse

Tissue-specific transcriptomic profiling provides new insights into the reproductive ecology and biology of the iconic seagrass species Posidonia oceanica

Trade-off between sex and growth in diatoms: Molecular mechanisms and demographic implications

Transcription initiation arising from E-cadherin/CDH1 intron2: a novel protein isoform that increases gastric cancer cell invasion and angiogenesis

Transcriptome sequencing of three Pseudo-nitzschia species reveals comparable gene sets and the presence of Nitric Oxide Synthase genes in diatoms.

oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language