List of works by Yves Vigouroux

A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives.

scientific article published on 4 August 2016

A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in monocotyledons

scientific article

A single domestication for maize shown by multilocus microsatellite genotyping

scientific article

A western Sahara centre of domestication inferred from pearl millet genomes

scientific article published on 06 August 2018

Adaptive Introgression: An Untapped Evolutionary Mechanism for Crop Adaptation

scientific article published in 2019

Adaptive introgression from maize has facilitated the establishment of teosinte as a noxious weed in Europe

scientific article published on 28 September 2020

Adaptive introgression: an untapped evolutionary mechanism for crop adaptation

An analysis of genetic diversity across the maize genome using microsatellites

scientific article

An extensive analysis of the African rice genetic diversity through a global genotyping

scientific article

Assessing fitness parameters of hybrids between weed beets and transgenic sugar beets

article by Yves Vigouroux et al published 2 November 2017 in Plant Breeding

Association mapping, patterns of linkage disequilibrium and selection in the vicinity of the PHYTOCHROME C gene in pearl millet.

scientific article

Association studies identify natural variation at PHYC linked to flowering time and morphological variation in pearl millet

scientific article published on 11 May 2009

Association studies including genotype by environment interactions: prospects and limits

scientific article

Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

scientific article published in 2022

Biodiversity, evolution and adaptation of cultivated crops

scientific article

Changes in the diversity and geographic distribution of cultivated millet (Pennisetum glaucum (L.) R. Br.) and sorghum (Sorghum bicolor (L.) Moench) varieties in Niger between 1976 and 2003

Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots

scientific article published on 13 June 2016

Chloroplast sequence of treegourd (Crescentia cujete, Bignoniaceae) to study phylogeography and domestication

scientific article published on 18 October 2016

Clonal diversity and estimation of relative clone age: application to agrobiodiversity of yam (Dioscorea rotundata).

scientific article

Close Genetic Proximity Between Cultivated and Wild Bactris gasipaes Kunth Revealed by Microsatellite Markers in Western Ecuador

scholarly article by T. L. P. Couvreur et al published 15 December 2005 in Genet Resour Crop Evol

Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude

scientific article published on 20 December 2019

Complete plastome sequences of 14 African yam species (Dioscorea spp.)

Construction of a genetic map for pearl millet, Pennisetum glaucum (L.) R. Br., using a genotyping-by-sequencing (GBS) approach

Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies

scientific article

Crop domestication as a step toward reproductive isolation

scientific article published in 2023

Crop wild relative conservation: Wild yams are not that wild

DNA Metabarcoding of Amazonian Ichthyoplankton Swarms

scientific article

Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

scientific article published on 7 January 2013

Development of a pearl millet Striga-resistant genepool: Response to five cycles of recurrent selection under Striga-infested field conditions in West Africa

Development of nuclear microsatellite markers for the fonio, Digitaria exilis (Poaceae), an understudied West African cereal

scientific article

Digestion and fermentation of proteins in rats fed keratin, albumin, cooked casein and antibiotics

scientific article published on January 1994

Directional evolution for microsatellite size in maize

scientific article published on 27 June 2003

Divergent expression patterns of miR164 and CUP-SHAPED COTYLEDON genes in palms and other monocots: implication for the evolution of meristem function in angiosperms

scientific article

Diversity of Algerian oases date palm (Phoenix dactylifera L., Arecaceae): Heterozygote excess and cryptic structure suggest farmer management had a major impact on diversity

scientific article

Diversity of Treegourd (Crescentia cujete) Suggests Introduction and Prehistoric Dispersal Routes into Amazonia

scientific article published in 2017

Diversity of wild and cultivated pearl millet accessions (Pennisetum glaucum [L.] R. Br.) in Niger assessed by microsatellite markers

scientific article published on 18 October 2006

Does agriculture conflict with in situ conservation? a case study on the use of wild relatives by yam farmers in Benin

scholarly article

EST-SSR development for Digitaria exilis and its relatives D. iburua and D. longiflora from transcriptome sequences

article

Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments

scholarly article published in Nature Biotechnology

Evolutionary forces affecting synonymous variations in plant genomes.

scientific article

Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication

scientific article published on 22 November 2011

FROM ADVANCED TO UNDERUTILIZED CROPS: MAKING FONIO BENEFIT FROM RESEARCH ON MAJOR CEREALS IN AFRICA

article published in 2013

Farmers' use of wild relative and sexual reproduction in a vegetatively propagated crop. The case of yam in Benin

scientific article published on August 2006

Fonio (Digitaria exilis (Kippist) Stapf): A Socially Embedded Cereal for Food and Nutrition Security in Senegal

Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate

scientific article published on 08 September 2020

Genetic basis of pearl millet adaptation along an environmental gradient investigated by a combination of genome scan and association mapping

scientific article published on 3 November 2010

Genetic diversity and population structure in a collection of roselle (Hibiscus sabdariffa L.) from Niger

Genetic diversity and population structure of teosinte

scientific article

Genetic structure of farmer-managed varieties in clonally-propagated crops

scientific article published on 01 August 2011

Genome scan reveals selection acting on genes linked to stress response in wild pearl millet

scientific article published on 24 September 2016

Genotyping-by-Sequencing SNP Identification for Crops without a Reference Genome: Using Transcriptome Based Mapping as an Alternative Strategy

scientific article published on 15 June 2016

Glutaredoxin regulation of primary root growth is associated with early drought stress tolerance in pearl millet

scientific article published in 2024

Guinea yam (Dioscorea spp., Dioscoreaceae) wild relatives identified using whole plastome phylogenetic analyses

scholarly article by Jacqueline Magwé-Tindo et al published 17 October 2018 in Taxon

High selfing rate inferred for white fonio [Digitaria exilis (Kippist.) Stapf] reproductive system opens up opportunities for breeding programs

article by Adeline Barnaud et al published 19 June 2017 in Genet Resour Crop Evol

Human management and hybridization shape treegourd fruits in the Brazilian Amazon Basin

scientific article

Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication

scientific article

Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?

scientific article published on 3 September 2015

Long-fragment targeted capture for long-read sequencing of plastomes

scientific article published on 08 May 2019

McSwan: a joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes

scientific article published on 22 November 2018

Metabarcoding by capture using a single COI probe (MCSP) to identify and quantify fish species in ichthyoplankton swarms

scientific article published in PLoS ONE

Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes

scientific article published on 12 October 2017

Myosin XI is associated with fitness and adaptation to aridity in wild pearl millet.

scientific article published on 15 March 2017

New Genetic Insights into Pearl Millet Diversity As Revealed by Characterization of Early- and Late-Flowering Landraces from Senegal

scientific article

Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers

scientific article

No Excess of Cis-Regulatory Variation Associated with Intraspecific Selection in Wild Pearl Millet (Cenchrus americanus).

scientific article published on 30 January 2017

Pearl Millet Genetic Traits Shape Rhizobacterial Diversity and Modulate Rhizosphere Aggregation

scientific article published on 27 July 2017

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

scientific article

Pearl millet genomic vulnerability to climate change in West Africa highlights the need for regional collaboration

scientific article published on 19 October 2020

Phylogenetics and diversification history of African rattans (Calamoideae, Ancistrophyllinae)

scholarly article by Adama Faye et al published 5 July 2016 in Botanical Journal of the Linnean Society

Phylogeny and origin of pearl millet (Pennisetum glaucum [L.] R. Br) as revealed by microsatellite loci

scientific article published on 27 May 2008

Phylogeography of the genus Podococcus (Palmae/Arecaceae) in Central African rain forests: Climate stability predicts unique genetic diversity.

scientific article

Population structure and genetic diversity of New World maize races assessed by DNA microsatellites

scientific article published on October 2008

Rate and Pattern of Mutation at Microsatellite Loci in Maize

article

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

scientific article published on 29 April 2019

Response to early drought stress and identification of QTLs controlling biomass production under drought in pearl millet

Role of seed flow on the pattern and dynamics of pearl millet (Pennisetum glaucum [L.] R. Br.) genetic diversity assessed by AFLP markers: a study in south-western Niger

scientific article published on 9 September 2007

Selection for earlier flowering crop associated with climatic variations in the Sahel

scientific article

Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples.

scientific article published on 3 March 2017

Spatial and Temporal Variation in Selection of Genes Associated with Pearl Millet Varietal Quantitative Traits In situ

scientific article published on 26 July 2016

Spatio-temporal dynamics of genetic diversity in Sorghum bicolor in Niger

scientific article

Structure of sweet potato (Ipomoea batatas) diversity in West Africa covaries with a climatic gradient

scientific article

The Discovery of Wild Date Palms in Oman Reveals a Complex Domestication History Involving Centers in the Middle East and Africa

scientific article

The Empirical Distribution of Singletons for Geographic Samples of DNA Sequences

scientific article published on 29 September 2017

The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes

scientific article published on 05 July 2018

The origin of the naked grains of maize

scientific article

Towards conservation and sustainable use of an indigenous crop: A large partnership network enabled the genetic diversity assessment of 1539 fonio (<scp><i>Digitaria exilis</i></scp>) accessions

scientific article published in 2023

Transgene escape in sugar beet production fields: data from six years farm scale monitoring

scientific article

Two disjunct Pleistocene populations and anisotropic postglacial expansion shaped the current genetic structure of the relict plant Amborella trichopoda

scientific article

Wild crop relative populations hot-spots of diversity are hot-spots of introgression in the case of pearl millet

miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species

scientific article

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