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List of works by Gerben Menschaert

A Role for Human N-alpha Acetyltransferase 30 (Naa30) in Maintaining Mitochondrial Integrity

scientific article published on 30 September 2016

A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome

scientific article

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites

scientific article published on 2 October 2014

An update on LNCipedia: a database for annotated human lncRNA sequences

scientific article published on 31 March 2015

An update on LNCipedia: a database for annotated human lncRNA sequences.

scientific article

Antigenic peptides: Reviving nuclear translation

scientific article published in December 2013

Beyond Genes: Re-Identifiability of Proteomic Data and Its Implications for Personalized Medicine

scientific article published on 05 September 2019

Bioinformatics solutions for MS/MS interpretation tailored to the peptidomics field.

scientific article published in January 2009

Colorado potato beetle (Coleoptera) gut transcriptome analysis: expression of RNA interference-related genes.

scientific article

Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs

scientific article

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

scientific article published on 21 February 2013

DeepRibo: a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns

article

Deletion 6q Drives T-cell Leukemia Progression by Ribosome Modulation

scientific article published on 28 September 2018

Diversity in protein glycosylation among insect species

scientific article

Fast and Reliable Quantitative Peptidomics with labelpepmatch.

scientific article published on February 2016

Identification of Small Novel Coding Sequences, a Proteogenomics Endeavor

scientific article

Improving the identification rate of endogenous peptides using electron transfer dissociation and collision-induced dissociation.

scientific article published on 3 October 2013

In Search of Lost Small Peptides

scientific article published on 31 July 2017

Interaction of the tobacco lectin with histone proteins

scientific article published on 11 January 2011

Linking mass spectrometric imaging and traditional peptidomics: a validation in the obese mouse model

scientific article

Little things make big things happen: A summary of micropeptide encoding genes

article

N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men

scientific article

Noncoding after All: Biases in Proteomics Data Do Not Explain Observed Absence of lncRNA Translation Products

scientific article

PIUS: peptide identification by unbiased search.

scientific article published on 24 May 2013

PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms

scientific article published on 30 April 2019

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration

scientific article

Peptidomics coming of age: a review of contributions from a bioinformatics angle.

scientific article published on May 2010

Proteogenomics from a bioinformatics angle: A growing field.

scientific article published on 15 December 2015

PubMeth: a cancer methylation database combining text-mining and expert annotation

scientific article

Quality evaluation of methyl binding domain based kits for enrichment DNA-methylation sequencing

scientific article

REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes

scientific article published on 31 August 2017

Spectral clustering in peptidomics studies allows homology searching and modification profiling: HomClus, a versatile tool.

scientific article

Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate

scientific article published in September 2009

The Proteomics Standards Initiative: Fifteen Years of Progress and Future Work.

scientific article

The Salivary Protein Repertoire of the Polyphagous Spider Mite Tetranychus urticae: A Quest for Effectors.

scientific article

The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data

eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs

scientific article published on 24 May 2017

proBAMconvert: A Conversion Tool for proBAM/proBed.

scientific article published on 2 June 2017

sORFs.org: a repository of small ORFs identified by ribosome profiling.

scientific article

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