List of works - Ricardo Henao

1330. Evaluation of Multiple Host Response-Based Strategies to Classify Acute Respiratory Illness

2012. FilmArray® Measurement of Host Response Signatures RapidLy Discriminates Viral, Bacterial, and Non-infectious Etiologies of Illness

2014. TLDA Validation of a Host Response Signature to Discriminate Bacterial, Viral, and Non-infectious Causes of Illness

2015. Host Gene Expression Identifies Infectious Triggers of Asthma Exacerbation

article

2018. Host Gene Expression Classifiers Distinguish Bacterial and Viral Infections in Sri Lankan Patients with Acute Febrile Respiratory Illness

article

2595. Murine Models for the Host Response to Typical and Atypical Pneumonia

A community approach to mortality prediction in sepsis via gene expression analysis.

scientific article published on 15 February 2018

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

scientific article published in Nature Communications

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

A flexible statistical model for alignment of label-free proteomics data--incorporating ion mobility and product ion information

scientific article

A host gene expression approach for identifying triggers of asthma exacerbations

article

A miRNA Host Response Signature Accurately Discriminates Acute Respiratory Infection Etiologies

scientific article published on 11 December 2018

A network of substrates of the E3 ubiquitin ligases MDM2 and HUWE1 control apoptosis independently of p53.

scientific article published on 07 May 2013

ALICE: Towards Understanding Adversarial Learning for Joint Distribution Matching ⬇️

scientific article published in January 2017

Adversarial Symmetric Variational Autoencoder ⬇️

scientific article published in January 2017

An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility

scientific article published on 22 December 2020

An integrated transcriptome and expressed variant analysis of sepsis survival and death

scientific article

Application of a machine learning algorithm to predict malignancy in thyroid cytopathology

scientific article published on 03 February 2020

Automated, quantitative analysis of histopathological staining in nuclei

scientific article published on 7 April 2014

Average Weighted Accuracy (AWA): Pragmatic Analysis for a RADICAL Study

scientific article published on 03 June 2019

Bayesian Nonlinear Support Vector Machines and Discriminative Factor Modeling ⬇️

scientific article published in January 2014

Bayesian Sparse Factor Models and DAGs Inference and Comparison ⬇️

Branched chain amino acid transaminase 1 (BCAT1) is overexpressed and hypomethylated in patients with non-alcoholic fatty liver disease who experience adverse clinical events: A pilot study

scientific article published in PLoS ONE

Calibration and Uncertainty in Neural Time-to-Event Modeling

scientific article published on 29 October 2020

Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin

scientific article published on 19 March 2015

Chromatin remodeling in peripheral blood cells reflects COVID-19 symptom severity

scientific article published on 05 December 2020

Convolutional neural network to identify symptomatic Alzheimer's disease using multimodal retinal imaging

scientific article published on 26 November 2020

Deconvolutional Paragraph Representation Learning ⬇️

scientific article published in January 2017

Deep Poisson Factor Modeling ⬇️

Deep Temporal Sigmoid Belief Networks for Sequence Modeling ⬇️

Differential evolution of peripheral cytokine levels in symptomatic and asymptomatic responses to experimental influenza virus challenge.

scientific article published on 28 October 2015

Down-regulation of microRNAs controlling tumourigenic factors in follicular thyroid carcinoma

scientific article

Gaussian Process Based Independent Analysis for Temporal Source Separation in fMRI

scientific article (publication date: February 2017)

Gene expression of the endolymphatic sac.

scientific article published on 23 October 2011

Hierarchical factor modeling of proteomics data

scientific article published in February 2012

Host gene expression classifiers diagnose acute respiratory illness etiology

scientific article published on January 2016

Identifying Smoking Environments From Images of Daily Life With Deep Learning

scientific article published on 02 August 2019

Improving Textual Network Learning with Variational Homophilic Embeddings ⬇️

Increased Glutaminolysis Marks Active Scarring in Nonalcoholic Steatohepatitis Progression

scientific article published on 25 December 2019

Inference of gene networks associated with the host response to infectious disease

article

Kernel Principal Component analysis through time for voice disorder classification

scientific article published in January 2006

Kernel-Based Approaches for Sequence Modeling: Connections to Neural Methods ⬇️

Laplacian Hamiltonian Monte Carlo

scientific article published in 2016

Large-Scale Bayesian Multi-Label Learning via Topic-Based Label Embeddings ⬇️

scientific article published in January 2015

Latent protein trees

scientific article published in June 2013

Machine-learning-based multiple abnormality prediction with large-scale chest computed tomography volumes

scientific article published on 09 October 2020

Molecular signatures of thyroid follicular neoplasia

scientific article

Nasopharyngeal Protein Biomarkers of Acute Respiratory Virus Infection

scientific article

PASS-GP: Predictive active set selection for Gaussian processes

Patient clustering with uncoded text in electronic medical records

scientific article published on 16 November 2013

Pilot study of myocardial ischemia-induced metabolomic changes in emergency department patients undergoing stress testing

scientific article published in PLoS ONE

Predictive active set selection methods for Gaussian processes

RAB11FIP5 Expression and Altered Natural Killer Cell Function Are Associated with Induction of HIV Broadly Neutralizing Antibody Responses

article

Reply to Kim et al.

scientific article published in May 2017

Semi-Supervised Kernel PCA ⬇️

Serum Interleukin-8, Osteopontin, and Monocyte Chemoattractant Protein 1 Are Associated With Hepatic Fibrosis in Patients With Nonalcoholic Fatty Liver Disease

TAMC: A deep-learning approach to predict motif-centric transcriptional factor binding activity based on ATAC-seq profile

scientific article published in 2022

Text Feature Adversarial Learning for Text Generation With Knowledge Transfer From GPT2

scientific article published in 2024

Towards Unifying Hamiltonian Monte Carlo and Slice Sampling ⬇️

scientific article published in January 2016

Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters.

scientific article published on 13 March 2018

VAE Learning via Stein Variational Gradient Descent ⬇️

scientific article published in January 2017

Validation of a host response test to distinguish bacterial and viral respiratory infection

scientific article published on 17 October 2019

Variational Autoencoder for Deep Learning of Images, Labels and Captions ⬇️

scientific article published in January 2016

Vitamin D is Not Associated With Severity in NAFLD: Results of a Paired Clinical and Gene Expression Profile Analysis.

scientific article published on 20 September 2016

Weakly supervised instance learning for thyroid malignancy prediction from whole slide cytopathology images

scientific article published on 25 September 2020

List of works by Ricardo Henao

1330. Evaluation of Multiple Host Response-Based Strategies to Classify Acute Respiratory Illness

2012. FilmArray® Measurement of Host Response Signatures RapidLy Discriminates Viral, Bacterial, and Non-infectious Etiologies of Illness

2014. TLDA Validation of a Host Response Signature to Discriminate Bacterial, Viral, and Non-infectious Causes of Illness

2015. Host Gene Expression Identifies Infectious Triggers of Asthma Exacerbation

2018. Host Gene Expression Classifiers Distinguish Bacterial and Viral Infections in Sri Lankan Patients with Acute Febrile Respiratory Illness

2595. Murine Models for the Host Response to Typical and Atypical Pneumonia

A community approach to mortality prediction in sepsis via gene expression analysis.

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

A flexible statistical model for alignment of label-free proteomics data--incorporating ion mobility and product ion information

A host gene expression approach for identifying triggers of asthma exacerbations

A miRNA Host Response Signature Accurately Discriminates Acute Respiratory Infection Etiologies

A network of substrates of the E3 ubiquitin ligases MDM2 and HUWE1 control apoptosis independently of p53.

ALICE: Towards Understanding Adversarial Learning for Joint Distribution Matching ⬇️

Adversarial Symmetric Variational Autoencoder ⬇️

An atlas connecting shared genetic architecture of human diseases and molecular phenotypes provides insight into COVID-19 susceptibility

An integrated transcriptome and expressed variant analysis of sepsis survival and death

Application of a machine learning algorithm to predict malignancy in thyroid cytopathology

Automated, quantitative analysis of histopathological staining in nuclei

Average Weighted Accuracy (AWA): Pragmatic Analysis for a RADICAL Study

Bayesian Nonlinear Support Vector Machines and Discriminative Factor Modeling ⬇️

Bayesian Sparse Factor Models and DAGs Inference and Comparison ⬇️

Branched chain amino acid transaminase 1 (BCAT1) is overexpressed and hypomethylated in patients with non-alcoholic fatty liver disease who experience adverse clinical events: A pilot study

Calibration and Uncertainty in Neural Time-to-Event Modeling

Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin

Chromatin remodeling in peripheral blood cells reflects COVID-19 symptom severity

Convolutional neural network to identify symptomatic Alzheimer's disease using multimodal retinal imaging

Deconvolutional Paragraph Representation Learning ⬇️

Deep Poisson Factor Modeling ⬇️

Deep Temporal Sigmoid Belief Networks for Sequence Modeling ⬇️

Differential evolution of peripheral cytokine levels in symptomatic and asymptomatic responses to experimental influenza virus challenge.

Down-regulation of microRNAs controlling tumourigenic factors in follicular thyroid carcinoma

Gaussian Process Based Independent Analysis for Temporal Source Separation in fMRI

Gene expression of the endolymphatic sac.

Hierarchical factor modeling of proteomics data

Host gene expression classifiers diagnose acute respiratory illness etiology

Identifying Smoking Environments From Images of Daily Life With Deep Learning

Improving Textual Network Learning with Variational Homophilic Embeddings ⬇️

Increased Glutaminolysis Marks Active Scarring in Nonalcoholic Steatohepatitis Progression

Inference of gene networks associated with the host response to infectious disease

Kernel Principal Component analysis through time for voice disorder classification

Kernel-Based Approaches for Sequence Modeling: Connections to Neural Methods ⬇️

Laplacian Hamiltonian Monte Carlo

Large-Scale Bayesian Multi-Label Learning via Topic-Based Label Embeddings ⬇️

Latent protein trees

Machine-learning-based multiple abnormality prediction with large-scale chest computed tomography volumes

Molecular signatures of thyroid follicular neoplasia

Nasopharyngeal Protein Biomarkers of Acute Respiratory Virus Infection

PASS-GP: Predictive active set selection for Gaussian processes

Patient clustering with uncoded text in electronic medical records

Pilot study of myocardial ischemia-induced metabolomic changes in emergency department patients undergoing stress testing

Predictive active set selection methods for Gaussian processes

RAB11FIP5 Expression and Altered Natural Killer Cell Function Are Associated with Induction of HIV Broadly Neutralizing Antibody Responses

Reply to Kim et al.

Semi-Supervised Kernel PCA ⬇️

Serum Interleukin-8, Osteopontin, and Monocyte Chemoattractant Protein 1 Are Associated With Hepatic Fibrosis in Patients With Nonalcoholic Fatty Liver Disease

TAMC: A deep-learning approach to predict motif-centric transcriptional factor binding activity based on ATAC-seq profile

Text Feature Adversarial Learning for Text Generation With Knowledge Transfer From GPT2

Towards Unifying Hamiltonian Monte Carlo and Slice Sampling ⬇️

Unsupervised Analysis of Transcriptomics in Bacterial Sepsis Across Multiple Datasets Reveals Three Robust Clusters.

VAE Learning via Stein Variational Gradient Descent ⬇️

Validation of a host response test to distinguish bacterial and viral respiratory infection

Variational Autoencoder for Deep Learning of Images, Labels and Captions ⬇️

Vitamin D is Not Associated With Severity in NAFLD: Results of a Paired Clinical and Gene Expression Profile Analysis.

Weakly supervised instance learning for thyroid malignancy prediction from whole slide cytopathology images