List of works by Hannes L. Röst

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

scientific article

A computational tool to detect and avoid redundancy in selected reaction monitoring

scientific article

A multicenter study benchmarks software tools for label-free proteome quantification

scientific article published on 03 October 2016

A repository of assays to quantify 10,000 human proteins by SWATH-MS.

scientific article

Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis

scientific article published on 18 June 2015

Amino acid and lipid metabolism in post-gestational diabetes and progression to type 2 diabetes: A metabolic profiling study

scientific article published on 20 May 2020

Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms

scientific article

Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms

BioContainers: An open-source and community-driven framework for software standardization

scientific article

DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics

scientific article published in 2022

DIANA--algorithmic improvements for analysis of data-independent acquisition MS data

scientific article

DIAlignR Provides Precise Retention Time Alignment Across Distant Runs in DIA and Targeted Proteomics

scientific article published on 31 January 2019

Deep learning adds an extra dimension to peptide fragmentation

scientific article published on 01 June 2019

Efficient visualization of high-throughput targeted proteomics experiments: TAPIR.

scientific article published on 18 March 2015

Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry

scientific article

From hype to reality: data science enabling personalized medicine

scientific article published on 27 August 2018

Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide

scientific article published on 7 June 2017

High-frequency actionable pathogenic exome variants in an average-risk cohort

scientific article published on 17 December 2018

Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry

scientific article

Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS.

scientific article

Integrative Personal Omics Profiles during Periods of Weight Gain and Loss.

scientific article published on 16 January 2018

Longitudinal multi-omics of host-microbe dynamics in prediabetes

scientific article published on 29 May 2019

Machine Learning in Mass Spectrometric Analysis of DIA Data

scientific article published on 15 February 2020

Numerical compression schemes for proteomics mass spectrometry data

scientific article

OpenMS: a flexible open-source software platform for mass spectrometry data analysis

scientific article

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

scientific article published in March 2014

PRMT5 inhibition disrupts splicing and stemness in glioblastoma

scientific article published on 12 February 2021

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

scientific article

Quantitative proteomics: challenges and opportunities in basic and applied research

scientific article published on June 2017

Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps

scientific article published on 2 March 2015

Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics

scientific article

Reproducible quantitative proteotype data matrices for systems biology

scientific article

Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses

scientific article

Statistical elimination of spectral features with large between-run variation enhances quantitative protein-level conclusions in experiments with data-independent spectral acquisition

Systems-level Proteomics of Two Ubiquitous Leaf Commensals Reveals Complementary Adaptive Traits for Phyllosphere Colonization

scientific article published on 25 July 2016

TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics

scientific article published on August 2016

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

scientific article

The Mtb proteome library: A resource of assays to quantify the complete proteome of mycobacterium tuberculosis

scientific article

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data

scientific article

diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition

scientific article published on 30 November 2020

pyOpenMS: a Python-based interface to the OpenMS mass-spectrometry algorithm library

scientific article published on January 2014

xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry

scientific article