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List of works by Ludovic C Gillet

Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis

scientific article published on 18 June 2015

An open-source computational and data resource to analyze digital maps of immunopeptidomes

scientific article

Building high-quality assay libraries for targeted analysis of SWATH MS data

scientific article

Conserved peptide fragmentation as a benchmarking tool for mass spectrometers and a discriminating feature for targeted proteomics

scientific article published on 12 March 2014

Crosslinking of the NER damage recognition proteins XPC-HR23B, XPA and RPA to photoreactive probes that mimic DNA damages

scientific article

Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness.

scientific article

High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification

scientific article published on 18 September 2019

Homologous recombination rescues mismatch-repair-dependent cytotoxicity of S(N)1-type methylating agents in S. cerevisiae

scientific article published in August 2005

In-cell selectivity profiling of serine protease inhibitors by activity-based proteomics

scientific article published on 24 March 2008

Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization

scientific article published in 2022

Molecular mechanisms of mammalian global genome nucleotide excision repair.

scientific article

OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

scientific article published in March 2014

Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast

scientific article

Preparation of C8-amine and acetylamine adducts of 2'-deoxyguanosine suitably protected for DNA synthesis

scientific article published on 01 November 2002

Processing of the ribosomal ubiquitin-like fusion protein FUBI-eS30/FAU is required for 40S maturation and depends on USP36

scientific article published in 2021

Puf6 primes 60S pre-ribosome nuclear export at low temperature

scientific article published on 04 August 2021

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system

scientific article

Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS.

scientific article

Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps

scientific article published on 2 March 2015

Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry

scientific article

Sensitive Quantitative Proteomics of Human Hematopoietic Stem and Progenitor Cells by Data-independent Acquisition Mass Spectrometry

scientific article published on 11 April 2019

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

scientific article

The GTPase Nog1 co-ordinates the assembly, maturation and quality control of distant ribosomal functional centers

scientific article published on 07 January 2020

The impact of genomic variation on protein phosphorylation states and regulatory networks

scientific article published on 01 May 2022

USP16 counteracts mono-ubiquitination of RPS27a and promotes maturation of the 40S ribosomal subunit

scientific article published on 04 March 2020

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