List of works by Robert Tibshirani

'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns

scientific article

1-norm Support Vector Machines ⬇️

scientific article published in January 2004

3'-end sequencing for expression quantification (3SEQ) from archival tumor samples

scientific article

A Framework for Feature Selection in Clustering ⬇️

scientific article published on June 1, 2010

A LASSO FOR HIERARCHICAL INTERACTIONS.

scientific article published in June 2013

A Noninvasive Molecular Clock for Fetal Development Predicts Gestational Age and Preterm Delivery

A Proteomic Clock of Human Pregnancy

scientific article published on 22 December 2017

A SIGNIFICANCE TEST FOR THE LASSO

scientific article published in April 2014

A Simple Method for Estimating Interactions between a Treatment and a Large Number of Covariates

scientific article

A fast and scalable framework for large-scale and ultrahigh-dimensional sparse regression with application to the UK Biobank

scientific article published on 23 October 2020

A fused lasso latent feature model for analyzing multi-sample aCGH data

scientific article

A method for calling gains and losses in array CGH data

scientific article

A multicentre study of primary breast diffuse large B-cell lymphoma in the rituximab era.

scientific article published on 27 January 2014

A network model of a cooperative genetic landscape in brain tumors

scientific article

A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis

scientific article published on 17 April 2009

A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions

scientific article

A simple method for analyzing matched designs with double controls: McNemar's test can be extended

scientific article

A simple method for assessing sample sizes in microarray experiments

scientific article

A tail strength measure for assessing the overall univariate significance in a dataset

scientific article published on 06 December 2005

Active idiotypic vaccination versus control immunotherapy for follicular lymphoma

scientific article

Adaptive index models for marker-based risk stratification

scientific article

Additive logistic regression: a statistical view of boosting

scientific article published in 2000

Alteration of gene expression signatures of cortical differentiation and wound response in lethal clear cell renal cell carcinomas

scientific article

Alteration of the lipid profile in lymphomas induced by MYC overexpression

scientific article

An FLT3 gene-expression signature predicts clinical outcome in normal karyotype AML

scientific article published on 28 February 2008

An Introduction to Statistical Learning

textbook

An evaluation of tumor oxygenation and gene expression in patients with early stage non-small cell lung cancers.

scientific article published in March 2006

An immune clock of human pregnancy.

scientific article published on September 2017

Analysis of factorial time-course microarrays with application to a clinical study of burn injury

scientific article

Anti-idiotype antibody response after vaccination correlates with better overall survival in follicular lymphoma

scientific article published on 03 April 2009

Are clusters found in one dataset present in another dataset?

scientific article

Array-based comparative genomic hybridization identifies localized DNA amplifications and homozygous deletions in pancreatic cancer

scientific article published on June 2005

Autoantibody epitope spreading in the pre-clinical phase predicts progression to rheumatoid arthritis

scientific article

Automated identification of stratifying signatures in cellular subpopulations

scientific article

Averaged gene expressions for regression

scientific article published on 11 May 2006

Bayesian gene set analysis for identifying significant biological pathways

scientific article published on August 2011

Big data modeling to predict platelet usage and minimize wastage in a tertiary care system

scientific article published on 9 October 2017

Blood autoantibody and cytokine profiles predict response to anti-tumor necrosis factor therapy in rheumatoid arthritis

scientific article published on 21 May 2009

Boolean implication networks derived from large scale, whole genome microarray datasets

scientific article published on 30 October 2008

Bootstrap Methods for Standard Errors, Confidence Intervals, and Other Measures of Statistical Accuracy

scientific article published in 1986

C-C chemokine receptor 1 expression in human hematolymphoid neoplasia

scientific article

CD81 protein is expressed at high levels in normal germinal center B cells and in subtypes of human lymphomas

scientific article published on 8 December 2009

CFH and ARMS2 genetic risk determines progression to neovascular age-related macular degeneration after antioxidant and zinc supplementation

scientific article published on 8 January 2018

CUSTOMIZED TRAINING WITH AN APPLICATION TO MASS SPECTROMETRIC IMAGING OF CANCER TISSUE ⬇️

Cancer characterization and feature set extraction by discriminative margin clustering

scientific article

Cardiolipins are biomarkers of mitochondria-rich thyroid oncocytic tumors

scientific article (publication date: 22 September 2016)

Cell type-specific gene expression differences in complex tissues

scientific article published on 07 March 2010

Characterization of variant patterns of nodular lymphocyte predominant hodgkin lymphoma with immunohistologic and clinical correlation

article

Chemical Space Mimicry for Drug Discovery

scientific article

Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma

scientific article published on 20 August 2018

Classification and prediction of clinical Alzheimer's diagnosis based on plasma signaling proteins

scientific article

Classification by Pairwise Coupling ⬇️

Classification by pairwise coupling

scientific article published in Annals of Statistics in 1998

Classification of patients from time-course gene expression

scientific article published on 27 August 2012

Collaborative regression

scientific article published on 17 November 2014

Comment on "The consensus coding sequences of human breast and colorectal cancers".

scientific article

Complementary hierarchical clustering

scientific article published on 18 December 2007

Correction: Autoantibody Epitope Spreading in the Pre-Clinical Phase Predicts Progression to Rheumatoid Arthritis

scholarly article by Jeremy Sokolove et al published 28 August 2012 in PLOS ONE

Corrigendum: Landscape of monoallelic DNA accessibility in mouse embryonic stem cells and neural progenitor cells.

scientific article

Covariance-regularized regression and classification for high-dimensional problems

scientific article

DR-Integrator: a new analytic tool for integrating DNA copy number and gene expression data

scientific article

DRUG-NEM: Optimizing drug combinations using single-cell perturbation response to account for intratumoral heterogeneity.

scientific article published on 13 April 2018

Data Shared Lasso: A Novel Tool to Discover Uplift

scientific article published on 12 March 2016

Defining the features and duration of antibody responses to SARS-CoV-2 infection associated with disease severity and outcome

scientific article published on 01 December 2020

Describing Health States

article

Developmental response to hypoxia

scientific article

Diagnosis of multiple cancer types by shrunken centroids of gene expression

scientific article

Diagnosis of prostate cancer by desorption electrospray ionization mass spectrometric imaging of small metabolites and lipids

scientific article

Different gene expression patterns in invasive lobular and ductal carcinomas of the breast

scientific article

Differentiation stage-specific expression of microRNAs in B lymphocytes and diffuse large B-cell lymphomas

scientific article published on December 2008

Discovery and validation of breast cancer subtypes

scientific article

Discovery and validation of breast cancer subtypes.

scientific article

Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling

scientific article

Discriminant Adaptive Nearest Neighbor Classification and Regression ⬇️

scientific article published in January 1996

Disease signatures are robust across tissues and experiments

scientific article published on 15 September 2009

Disease-specific genomic analysis: identifying the signature of pathologic biology

scientific article published on 3 February 2007

Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer

scientific article

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

scientific article (publication date: 3 February 2000)

Driving fatalities on US presidential election days

scientific article published in October 2008

Dynamic Risk Profiling Using Serial Tumor Biomarkers for Personalized Outcome Prediction

scientific article published on 04 July 2019

Early detection of breast cancer based on gene-expression patterns in peripheral blood cells

scientific article

Efficient quadratic regularization for expression arrays

scientific article published on 01 July 2004

Empirical Bayes Analysis of a Microarray Experiment

article

Empirical bayes methods and false discovery rates for microarrays

scientific article published in June 2002

Estimation of Sparse Binary Pairwise Markov Networks using Pseudo-likelihoods

scientific article

Expression and prognostic significance of a panel of tissue hypoxia markers in head-and-neck squamous cell carcinomas

scientific article published on September 2007

Expression of cytokeratins 17 and 5 identifies a group of breast carcinomas with poor clinical outcome

scientific article

Extensions of sparse canonical correlation analysis with applications to genomic data

scientific article

Extracting binary signals from microarray time-course data

scientific article

Fast Lasso method for large-scale and ultrahigh-dimensional Cox model with applications to UK Biobank

scientific article published on 29 September 2020

Fibromyalgia and the Risk of a Subsequent Motor Vehicle Crash

scientific article published on 15 May 2015

Finding consistent patterns: a nonparametric approach for identifying differential expression in RNA-Seq data

scientific article

Flawed analysis, implausible results--move on.

scientific article published on February 2004

Food allergy and omics

scientific article published in January 2018

Gene expression patterns in ovarian carcinomas

scientific article

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

scientific article (publication date: 11 September 2001)

Gene expression profiles at diagnosis in de novo childhood AML patients identify FLT3 mutations with good clinical outcomes

scientific article

Gene expression profiling differentiates germ cell tumors from other cancers and defines subtype-specific signatures

scientific article

Gene expression profiling identifies clinically relevant subtypes of prostate cancer

scholarly article

Gene expression profiling predicts survival in conventional renal cell carcinoma

scientific article

Genetics of 35 blood and urine biomarkers in the UK Biobank

Genome-wide characterization of gene expression variations and DNA copy number changes in prostate cancer cell lines

scientific article

Genome-wide measurement of RNA folding energies

scientific article

Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis

scientific article published on 16 May 2019

Genomic feature selection by coverage design optimization

Genomics of childhood leukemias: the virtue of complexity

scientific article published on 01 September 2008

Global transcriptional response to interferon is a determinant of HCV treatment outcome and is modified by race

scientific article published in August 2006

HGAL is a novel interleukin-4-inducible gene that strongly predicts survival in diffuse large B-cell lymphoma.

scientific article published in January 2003

Hierarchical Clustering With Prototypes via Minimax Linkage

scientific article published in January 2011

High-dimensional regression adjustments in randomized experiments

scientific article published on 25 October 2016

Hybrid hierarchical clustering with applications to microarray data

scientific article

IRF9 and STAT1 are required for IgG autoantibody production and B cell expression of TLR7 in mice

scientific article

Identification of diagnostic metabolic signatures in clear cell renal cell carcinoma using mass spectrometry imaging

scientific article published on 21 December 2019

Identification of gene microarray expression profiles in patients with chronic graft-versus-host disease following allogeneic hematopoietic cell transplantation

scientific article

Immune signatures in follicular lymphoma

scientific article published in April 2005

Improvements on Cross-Validation: The .632+ Bootstrap Method

article

In situ vaccination against mycosis fungoides by intratumoral injection of a TLR9 agonist combined with radiation: a phase 1/2 study

scientific article published on November 2011

In situ vaccination with a TLR9 agonist induces systemic lymphoma regression: a phase I/II study

scientific article

Increased diversity of gut microbiota during active oral immunotherapy in peanut allergic adults

scientific article published on 04 August 2020

Increasing value and reducing waste in research design, conduct, and analysis

scientific article

Independent Components Analysis through Product Density Estimation ⬇️

scientific article published in January 2003

Integrating genomic features for non-invasive early lung cancer detection

scientific article published on 25 March 2020

Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions

scientific article published on 12 October 2020

LMO2 and BCL6 are associated with improved survival in primary central nervous system lymphoma

scientific article

LMO2 protein expression predicts survival in patients with diffuse large B-cell lymphoma treated with anthracycline-based chemotherapy with and without rituximab

scientific article

Landscape of monoallelic DNA accessibility in mouse embryonic stem cells and neural progenitor cells

scientific article published on 23 January 2017

Least angle regression

article

Local false discovery rate facilitates comparison of different microarray experiments

scientific article published on December 2009

Log-ratio Lasso: Scalable, Sparse Estimation for Log-ratio Models

scientific article published on 29 March 2019

Long-term course of patients with primary ocular adnexal MALT lymphoma: a large single-institution cohort study

scientific article published on 27 October 2016

Lymphoma cell VEGFR2 expression detected by immunohistochemistry predicts poor overall survival in diffuse large B cell lymphoma treated with immunochemotherapy (R-CHOP).

scientific article

Mapping lung cancer epithelial-mesenchymal transition states and trajectories with single-cell resolution

scientific article published on 06 December 2019

Metabolic Dynamics and Prediction of Gestational Age and Time to Delivery in Pregnant Women

scientific article published on 01 June 2020

Metabolic Markers and Statistical Prediction of Serous Ovarian Cancer Aggressiveness by Ambient Ionization Mass Spectrometry Imaging

scientific article published on 17 April 2017

Methods for Analyzing Matched Designs with Double Controls: Excess Risk is Easily Estimated and Misinterpreted When Evaluating Traffic Deaths

scientific article published on 13 February 2018

MicroRNAs are independent predictors of outcome in diffuse large B-cell lymphoma patients treated with R-CHOP.

scientific article

Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors

scientific article

Microvessel density and expression of vascular endothelial growth factor and its receptors in diffuse large B-cell lymphoma subtypes

scientific article published on April 2007

Missing value estimation methods for DNA microarrays

scientific article (publication date: June 2001)

Molecular assessment of surgical-resection margins of gastric cancer by mass-spectrometric imaging

scientific article published on 03 February 2014

Molecular subtyping for clinically defined breast cancer subgroups

scientific article

Mouse strain-specific differences in vascular wall gene expression and their relationship to vascular disease.

scientific article published on 18 November 2004

Multicenter Study Using Desorption-Electrospray-Ionization-Mass-Spectrometry Imaging for Breast-Cancer Diagnosis

scientific article published on 18 September 2018

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy

Multiplexed proximity ligation assays to profile putative plasma biomarkers relevant to pancreatic and ovarian cancer

scientific article published on 02 January 2008

Noninvasive blood tests for fetal development predict gestational age and preterm delivery

scientific article published in Science

Normalization, testing, and false discovery rate estimation for RNA-sequencing data

scientific article

Notch signals positively regulate activity of the mTOR pathway in T-cell acute lymphoblastic leukemia

scientific article published on 15 March 2007

Note on "Comparison of model selection for regression" by Vladimir Cherkassky and Yunqian Ma.

scientific article published in July 2003

Nuclear penalized multinomial regression with an application to predicting at bat outcomes in baseball.

scientific article published on 11 June 2018

Oncogenic regulators and substrates of the anaphase promoting complex/cyclosome are frequently overexpressed in malignant tumors.

scientific article published on May 2007

Origins and clonal convergence of gastrointestinal IgE+ B cells in human peanut allergy

scientific article published on 01 March 2020

Outlier sums for differential gene expression analysis

scientific article published on 15 May 2006

Pancancer analysis of DNA methylation-driven genes using MethylMix

scientific article published on 29 January 2015

Pancreatic Cancer Surgical Resection Margins: Molecular Assessment by Mass Spectrometry Imaging

scientific article

Paraffin-based 6-gene model predicts outcome in diffuse large B-cell lymphoma patients treated with R-CHOP.

scientific article published on 29 April 2008

Pathophysiological significance and therapeutic targeting of germinal center kinase in diffuse large B-cell lymphoma

scientific article published on 05 May 2016

Penalized classification using Fisher's linear discriminant

scientific article published on November 2011

Physicians' warnings for unfit drivers and risk of road crashes

scientific article

Physicians' warnings for unfit drivers and the risk of trauma from road crashes

scientific article published in September 2012

Polygenic risk modeling with latent trait-related genetic components

scientific article published in 2021

Post-Selection Inference for ℓ1-Penalized Likelihood Models

scientific article published on 06 March 2017

Pre-validation and inference in microarrays.

scientific article

Precision and functional specificity in mRNA decay

scientific article

Predicting patient survival from longitudinal gene expression

scientific article

Prediction by Supervised Principal Components

Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment

scientific article

Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes

scientific article published in April 2004

Preoperative metabolic classification of thyroid nodules using mass spectrometry imaging of fine-needle aspiration biopsies

scientific article published on 07 October 2019

Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells

scientific article published on 11 February 2019

Prototype selection for interpretable classification

scientific article published in December 2011

QnAs with Robert Tibshirani

scientific article published on June 2015

Quantitative SD-OCT imaging biomarkers as indicators of age-related macular degeneration progression.

scientific article published on 9 October 2014

Regression Shrinkage and Selection Via the Lasso

scientific article published in 1996

Regularization Paths for Conditional Logistic Regression: The clogitL1 Package

scientific article published on July 2014

Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent

scientific article

Regularization Paths for Generalized Linear Models via Coordinate Descent

scientific article (publication date: 2010)

Regularized linear discriminant analysis and its application in microarrays

scientific article published on 7 April 2006

Relationship of differential gene expression profiles in CD34+ myelodysplastic syndrome marrow cells to disease subtype and progression

scientific article published on 02 October 2009

Repeated observation of breast tumor subtypes in independent gene expression data sets

scientific article (publication date: 8 July 2003)

Reply to J. Wang et al

scientific article published on 12 February 2019

Results from the second year of a collaborative effort to forecast influenza seasons in the United States

scientific article published on 24 February 2018

Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival

scientific article

SARS-CoV-2 Antibody Responses Correlate with Resolution of RNAemia But Are Short-Lived in Patients with Mild Illness

scientific article published on 17 August 2020

STANDARDIZATION AND THE GROUP LASSO PENALTY.

scientific article published on July 2012

Sample classification from protein mass spectrometry, by 'peak probability contrasts'.

scientific article

Scientific research in the age of omics: the good, the bad, and the sloppy

scientific article

Semi-supervised methods to predict patient survival from gene expression data

scientific article

Shaping of infant B cell receptor repertoires by environmental factors and infectious disease

scientific article published on 01 February 2019

Signature patterns of gene expression in mouse atherosclerosis and their correlation to human coronary disease

scientific article published on 03 May 2005

Significant sparse polygenic risk scores across 813 traits in UK Biobank

scientific article published on 24 March 2022

Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse

scientific article published on 5 March 2018

Some methods for heterogeneous treatment effect estimation in high dimensions

scientific article published on 6 March 2018

Sparse Principal Component Analysis

article by Hui Zou et al published June 2006 in Journal of Computational and Graphical Statistics

Sparse estimation of a covariance matrix

scientific article

Sparse inverse covariance estimation with the graphical lasso

scientific article

Sparse regression and marginal testing using cluster prototypes

scientific article

Spatial smoothing and hot spot detection for CGH data using the fused lasso

scientific article

Spectral Regularization Algorithms for Learning Large Incomplete Matrices.

scientific article

Statistical Learning with Sparsity

scientific article

Statistical Methods for Identifying Differentially Expressed Genes in DNA Microarrays

article

Statistical learning and selective inference

scientific article

Statistical significance for genomewide studies

scientific article

Strong rules for discarding predictors in lasso-type problems

scientific article

Successful immunotherapy induces previously unidentified allergen-specific CD4+ T-cell subsets

scientific article published on 25 January 2016

Supervised harvesting of expression trees

scientific article

Survival analysis with high-dimensional covariates

scientific article published on 04 August 2009

Sustained outcomes in oral immunotherapy for peanut allergy (POISED study): a large, randomised, double-blind, placebo-controlled, phase 2 study

scientific article published on 12 September 2019

Systems analysis of sex differences reveals an immunosuppressive role for testosterone in the response to influenza vaccination

scientific article published on 23 December 2013

TESTING SIGNIFICANCE OF FEATURES BY LASSOED PRINCIPAL COMPONENTS.

scientific article published on September 2008

THE LASSO METHOD FOR VARIABLE SELECTION IN THE COX MODEL

scientific article (publication date: 28 February 1997)

TRANSPOSABLE REGULARIZED COVARIANCE MODELS WITH AN APPLICATION TO MISSING DATA IMPUTATION

scientific article

Temporal changes in gene expression induced by sulforaphane in human prostate cancer cells

scientific article published on February 2009

The 'miss rate' for the analysis of gene expression data

scientific article

The Elements of Statistical Learning ⬇️

book on statistical learning (second edition, 2009)

The Entire Regularization Path for the Support Vector Machine ⬇️

scientific article published in January 2005

The Radiogenomic Risk Score: Construction of a Prognostic Quantitative, Noninvasive Image-based Molecular Assay for Renal Cell Carcinoma

scientific article published on 19 August 2015

The prognostic value of tumor-associated macrophages in leiomyosarcoma: a single institution study

scientific article published on February 2011

The use of plasma surface-enhanced laser desorption/ionization time-of-flight mass spectrometry proteomic patterns for detection of head and neck squamous cell cancers

scientific article

Toxicity from radiation therapy associated with abnormal transcriptional responses to DNA damage

scientific article

Transcriptional changes in peanut-specific CD4+ T cells over the course of oral immunotherapy

scientific article published on 09 August 2020

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

scientific article

Transcriptional programs activated by exposure of human prostate cancer cells to androgen

scientific article

Transparency and reproducibility in artificial intelligence

scientific article published on 14 October 2020

Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls

scientific article

Univariate shrinkage in the cox model for high dimensional data

scientific article

Unsupervised Learning

article

Unsupervised Learning ⬇️

chapter from 'The Elements of Statistical Learning' published in 2001

Use of gene-expression profiling to identify prognostic subclasses in adult acute myeloid leukemia

scientific article

Who is the Fastest Man in the World?

hCAP-D3 Expression Marks a Prostate Cancer Subtype With Favorable Clinical Behavior and Androgen Signaling Signature

scientific article published on 01 February 2008

“Preconditioning” for feature selection and regression in high-dimensional problems

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