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List of works by Veit Schwämmle

2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software

scientific article published in 2023

A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation

scientific article published on 25 June 2019

A community proposal to integrate proteomics activities in ELIXIR

scientific article

A computational model for histone mark propagation reproduces the distribution of heterochromatin in different human cell types

scientific article

A model of Barchan dunes including lateral shear stress

scientific article published on 31 January 2005

A novel method for the simultaneous enrichment, identification, and quantification of phosphopeptides and sialylated glycopeptides applied to a temporal profile of mouse brain development

scientific article

A proteomics approach to the identification of biomarkers for psoriasis utilising keratome biopsy

scientific article published on 20 September 2013

A proteomics sample metadata representation for multiomics integration and big data analysis

scientific article published in 2021

A simple and fast method to determine the parameters for fuzzy c–means cluster analysis ⬇️

scientific article published on September 29, 2010

Accumulation of histone variant H3.3 with age is associated with profound changes in the histone methylation landscape.

scientific article

Analysis of the Effect of Intestinal Ischemia and Reperfusion on the Rat Neutrophils Proteome

scientific article published on 29 November 2018

Assessment and improvement of statistical tools for comparative proteomics analysis of sparse data sets with few experimental replicates

scientific article

Automated workflow composition in mass spectrometry-based proteomics

scientific article published on 01 February 2019

Breeding and solitary wave behavior of dunes

scientific article published on 31 August 2005

CoExpresso: assess the quantitative behavior of protein complexes in human cells

article by Morteza H Chalabi et al published 9 January 2019 in BMC Bioinformatics

Community curation of bioinformatics software and data resources

scientific article published on 16 October 2019

ComplexBrowser: A Tool for Identification and Quantification of Protein Complexes in Large-scale Proteomics Datasets

scientific article published on 25 August 2019

Computational and Statistical Methods for High-Throughput Mass Spectrometry-Based PTM Analysis.

scientific article

Computational and statistical methods for high-throughput analysis of post-translational modifications of proteins.

scientific article published on 24 July 2015

Consequences of the H theorem from nonlinear Fokker-Planck equations

scientific article published on 17 October 2007

Correction: Quantifying Online News Media Coverage of the COVID-19 Pandemic: Text Mining Study and Resource

scientific article published in 2021

Depolarization-dependent induction of site-specific changes in sialylation on N-linked glycoproteins in rat nerve terminals

scientific article published on 09 June 2020

Different topologies for a herding model of opinion

scientific article published on 25 June 2007

Distinct urinary glycoprotein signatures in prostate cancer patients

Dune formation under bimodal winds

scientific article

Extensive Characterization of Heavily Modified Histone Tails by 193 nm Ultraviolet Photodissociation Mass Spectrometry via a Middle–Down Strategy

scientific article published on 16 August 2018

Geomorphology: solitary wave behaviour of sand dunes.

scientific article

High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications

article

Individual-based model with global competition interaction: fluctuation effects in pattern formation

scientific article published on 26 February 2008

IsoProt: A Complete and Reproducible Workflow To Analyze iTRAQ/TMT Experiments

scientific article published on 20 March 2019

IsoProt: A complete and reproducible workflow to analyse iTRAQ/TMT experiments

Isotope labeling-based quantitative proteomics of developing seeds of castor oil seed (Ricinus communis L.).

scientific article published on 10 October 2013

JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools

scientific article published on 08 January 2020

Large scale analysis of co-existing post-translational modifications in histone tails reveals global fine structure of cross-talk

scientific article

Maximizing Sequence Coverage in Top-Down Proteomics By Automated Multimodal Gas-Phase Protein Fragmentation

scientific article published on 10 October 2018

Middle-Down Proteomic Analyses with Ion Mobility Separations of Endogenous Isomeric Proteoforms

scientific article published on 17 January 2020

Middle-down hybrid chromatography/tandem mass spectrometry workflow for characterization of combinatorial post-translational modifications in histones

scientific article

Neuronal process structure and growth proteins are targets of heavy PTM regulation during brain development

scientific article published on 18 February 2014

Neutrophil proteomic analysis reveals the participation of antioxidant enzymes, motility and ribosomal proteins in the prevention of ischemic effects by preconditioning.

scientific article published on 18 May 2016

Nuclear phosphoproteome analysis of 3T3-L1 preadipocyte differentiation reveals system-wide phosphorylation of transcriptional regulators

scientific article published on 26 September 2016

One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science

scientific article published on 29 August 2019

Performance of isobaric and isotopic labeling in quantitative plant proteomics

scientific article published on 9 April 2012

Perspectives on automated composition of workflows in the life sciences

scientific article

PolySTest: Robust statistical testing of proteomics data with missing values improves detection of biologically relevant features

scientific article published on 18 May 2020

Precision mapping of coexisting modifications in histone H3 tails from embryonic stem cells by ETD-MS/MS.

scientific article published on 16 August 2013

ProForma: A Standard Proteoform Notation.

scientific article published on 5 February 2018

Proceedings of the EuBIC Winter School 2017.

scientific article published on 03 April 2017

Proceedings of the EuBIC Winter School 2019

scientific article published on 01 March 2019

Proceedings of the EuBIC developer's meeting 2018

article

Proteomics Software in bio.tools: Coverage and Annotations

scientific article published on 15 March 2021

Quantifying Online News Media Coverage of the COVID-19 Pandemic: Text Mining Study and Resource

scientific article published in 2021

Quantitative Proteomic Map of the Trypanosomatid Strigomonas culicis: The Biological Contribution of its Endosymbiotic Bacterium

scientific article published on 01 November 2019

Quantitative assessment of in-solution digestion efficiency identifies optimal protocols for unbiased protein analysis

scientific article published on 21 June 2013

Quantitative behavior of protein complexes in human cells

article published in 2018

Quantitative proteome analysis of Streptomyces coelicolor Nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures.

scientific article published on September 2010

Quantitative proteomic and phosphoproteomic analysis of Trypanosoma cruzi amastigogenesis.

scientific article published on 15 September 2014

Quantitative proteomics analysis of Streptomyces coelicolor development demonstrates that onset of secondary metabolism coincides with hypha differentiation.

scientific article

Selective renal vasoconstriction, exaggerated natriuresis and excretion rates of exosomic proteins in essential hypertension

scientific article published on 25 July 2014

Simulations of a mortality plateau in the sexual Penna model for biological aging

scientific article published on 19 September 2005

Spatial and temporal effects in protein post-translational modification distributions in the developing mouse brain

scientific article

Systems Level Analysis of Histone H3 Post-translational Modifications (PTMs) Reveals Features of PTM Crosstalk in Chromatin Regulation

scientific article published on 14 June 2016

The AIMe registry for artificial intelligence in biomedical research

scientific article published on 25 August 2021

The bio.tools registry of software tools and data resources for the life sciences

article

The cultural divide: exponential growth in classical 2D and metabolic equilibrium in 3D environments

scientific article

Thermodynamic behavior of a phase transition in a model for sympatric speciation

scientific article published on 09 August 2006

Time-resolved quantitative phosphoproteomics: new insights into Angiotensin-(1-7) signaling networks in human endothelial cells.

scientific article

Tools and data services registry: a community effort to document bioinformatics resources

scientific article

VSClust: Feature-based variance-sensitive clustering of omics data.

scientific article published on 9 April 2018

WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

scientific article published in December 2023

biotoolsSchema: a formalized schema for bioinformatics software description

scientific article published in January 2021

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