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List of works by Joseph P Bielawski

Adaptive diversification of vomeronasal receptor 1 genes in rodents

scientific article published on 01 May 2005

Adaptive evolution of multicolored fluorescent proteins in reef-building corals

scientific article

BioMiCo: a supervised Bayesian model for inference of microbial community structure.

scientific article

BiomeNet: a Bayesian model for inference of metabolic divergence among microbial communities

scientific article

Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment.

scholarly article

Detecting the Signatures of Adaptive Evolution in Protein‐Coding Genes ⬇️

scientific article published on January 1, 2013

Early Changes in Microbial Community Structure Are Associated with Sustained Remission After Nutritional Treatment of Pediatric Crohn's Disease.

scientific article

Evolutionary rate variation among vertebrate beta globin genes: implications for dating gene family duplication events

scientific article

Evolutionary rates and expression level in Chlamydomonas

scientific article

Functional Divergence of the Nuclear Receptor NR2C1 as a Modulator of Pluripotentiality During Hominid Evolution

scientific article

Gene conversion and functional divergence in the beta-globin gene family

scientific article

Improved inference of site-specific positive selection under a generalized parametric codon model when there are multinucleotide mutations and multiple nonsynonymous rates

scientific article published on 14 January 2019

Improving evolutionary models for mitochondrial protein data with site-class specific amino acid exchangeability matrices

scientific article (publication date: 2013)

Inference of Episodic Changes in Natural Selection Acting on Protein Coding Sequences via CODEML.

scientific article published on 20 June 2016

Inference of functional divergence among proteins when the evolutionary process is non-stationary

scientific article

Investigating the gut microbial community and genes in children with differing levels of change in serum asparaginase activity during pegaspargase treatment for acute lymphoblastic leukemia

scientific article published on 01 December 2020

Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation

scientific article

Likelihood-based clustering (LiBaC) for codon models, a method for grouping sites according to similarities in the underlying process of evolution

scientific article published on 26 June 2008

Maximum likelihood methods for detecting adaptive evolution after gene duplication.

scientific article

Methods for selecting fixed-effect models for heterogeneous codon evolution, with comments on their application to gene and genome data.

scientific article

Molecular evolutionary characterization of a V1R subfamily unique to strepsirrhine primates

scientific article published on January 2014

Multilocus genotyping assays for single nucleotide polymorphism-based subtyping of Listeria monocytogenes isolates.

scientific article published on 17 October 2008

Novel Proteorhodopsin variants from the Mediterranean and Red Seas.

scientific article published in October 2003

Novel Strategies for Applied Metagenomics.

scientific article published on 4 February 2016

Phylogenomic analysis of natural selection pressure in Streptococcus genomes

scientific article

Portal protein diversity and phage ecology.

scientific article published on 31 July 2008

Positive Darwinian selection in the piston that powers proton pumps in complex I of the mitochondria of Pacific salmon

scientific article

Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates

scientific article published on 01 October 2005

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

scientific article

Proposed standard nomenclature for the alpha- and beta-globin gene families

scientific article published in October 2006

Randomly amplified polymorphic DNA (RAPD) analysis of Atlantic Coast striped bass

scientific article published on 01 January 1997

Recombination detection under evolutionary scenarios relevant to functional divergence

scientific article

Reconciling ecological and genomic divergence among lineages of listeria under an "extended mosaic genome concept".

scientific article

Seasonal assemblages and short-lived blooms in coastal north-west Atlantic Ocean bacterioplankton.

scientific article published on 22 September 2014

Smoothed Bootstrap Aggregation for Assessing Selection Pressure at Amino Acid Sites.

scientific article published on 2 August 2016

The Gut Microbiome of Pediatric Crohn's Disease Patients Differs from Healthy Controls in Genes That Can Influence the Balance Between a Healthy and Dysregulated Immune Response

scientific article

The origin and evolution of geminivirus-related DNA sequences in Nicotiana.

scientific article published in April 2004

Trade-offs between efficiency and robustness in bacterial metabolic networks are associated with niche breadth

scientific article published on 14 April 2009

Widespread adaptive evolution in the human immunodeficiency virus type 1 genome

scientific article published in August 2003

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