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List of works by Young Min Rhee

(DNS)C: a fluorescent, environmentally sensitive cytidine derivative for the direct detection of GGG triad sequences.

scientific article published on September 2013

A delicate electronic balance between metal and ligand in [Cu-P-Cu-P] diamondoids: oxidation state dependent plasticity and the formation of a singlet diradicaloid

scientific article published on 4 March 2008

A proton transfer network that generates deprotonated tyrosine is a key to producing reactive oxygen species in phototoxic KillerRed protein

scientific article published on 01 August 2018

A structural remedy toward bright dipolar fluorophores in aqueous media

scientific article published on 18 May 2015

Advances in methods and algorithms in a modern quantum chemistry program package.

scientific article

An improved algorithm for analytical gradient evaluation in resolution-of-the-identity second-order Møller-Plesset perturbation theory: Application to alanine tetrapeptide conformational analysis

scientific article (publication date: 15 April 2007)

Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing

scientific article

C3-symmetric cage-like receptors: chiral discrimination of α-chiral amines in a confined space

scientific article published in October 2010

Characterization of vinylgold intermediates: gold-mediated cyclization of acetylenic amides

scientific article published on 05 October 2011

Charge-dipole interactions in G-quadruplex thrombin-binding aptamer

scientific article published on 01 August 2018

Charged polycyclic aromatic hydrocarbon clusters and the galactic extended red emission

scholarly article

Coherent intermolecular proton transfer in the acid-base reaction of excited state pyranine.

scientific article published on 10 July 2017

Condensed phase molecular dynamics using interpolated potential energy surfaces with application to the resolvation process of coumarin 153.

scientific article published in July 2011

Constructing an Interpolated Potential Energy Surface of a Large Molecule: A Case Study with Bacteriochlorophyll a Model in the Fenna-Matthews-Olson Complex

scientific article

Constructing polyatomic potential energy surfaces by interpolating diabatic Hamiltonian matrices with demonstration on green fluorescent protein chromophore

scientific article published in April 2014

Diabatic Population Matrix Formalism for Performing Molecular Mechanics Style Simulations with Multiple Electronic States

scientific article published in December 2014

Dimerization of the p53 oligomerization domain: identification of a folding nucleus by molecular dynamics simulations.

scientific article

Dispersion-oriented soft interaction in a frustrated Lewis pair and the entropic encouragement effect in its formation

scientific article published in December 2009

Does native state topology determine the RNA folding mechanism?

scientific article published in April 2004

Does water play a structural role in the folding of small nucleic acids?

scientific article

Dynamics on the electronically excited state surface of the bioluminescent firefly luciferase-oxyluciferin system.

scientific article

Effect of Chromophore Potential Model on the Description of Exciton-Phonon Interactions.

scientific article published on 9 July 2015

Effect of Perturbative Vibronic Correction for Weak Fluorescence in Thermally Activated Delayed Fluorescence Systems

scientific article published on 27 November 2020

Effect of Underdamped Vibration on Excitation Energy Transfer: Direct Comparison between Two Different Partitioning Schemes

scientific article published on 31 January 2019

Efficiently Transplanting Potential Energy Interpolation Database between Two Systems: Bacteriochlorophyll Case with FMO and LH2 Complexes

scientific article published on 17 September 2019

Electric Field Keeps Chromophore Planar and Produces High Yield Fluorescence in GFP.

scientific article published on 23 September 2016

Emission shaping in fluorescent proteins: role of electrostatics and π-stacking.

scientific article

Excited state energy fluctuations in the Fenna-Matthews-Olson complex from molecular dynamics simulations with interpolated chromophore potentials.

scientific article published on 29 November 2017

Fluorescent peptide indicator displacement assay for monitoring interactions between RNA and RNA binding proteins

scientific article published in May 2013

Ground-state elevation approach to suppress side reactions in gold-sensing systems based on alkyne activation

scientific article published on 13 February 2014

How Does Solvation Affect the Binding of Hydrophilic Amino Saccharides to Cucurbit[7]uril with Exceptional Anomeric Selectivity?

scientific article published on 16 September 2016

How well can simulation predict protein folding kinetics and thermodynamics?

scientific article

Improving long time behavior of Poisson bracket mapping equation: a mapping variable scaling approach

scientific article published in September 2014

Improving long time behavior of Poisson bracket mapping equation: a non-Hamiltonian approach.

scientific article published on May 2014

Insights into nucleic acid conformational dynamics from massively parallel stochastic simulations

scientific article

Interpolated mechanics-molecular mechanics study of internal rotation dynamics of the chromophore unit in blue fluorescent protein and its variants

scientific article published on 30 August 2012

Kinetic definition of protein folding transition state ensembles and reaction coordinates

scientific article published on 14 April 2006

Modeling Charge Flux by Interpolating Atomic Partial Charges

scientific article published on 04 June 2019

Molecule-specific determination of atomic polarizabilities with the polarizable atomic multipole model.

scientific article published on 8 May 2012

N-heterocyclic carbene nitric oxide radicals

scientific article published on 06 April 2015

On surface hopping and time-reversal

scientific article published on 30 January 2015

On the mechanism of irreversible carbon dioxide binding with a frustrated lewis pair: solvent-assisted frustration and transition-state entropic encouragement

scientific article published on 27 April 2011

On the pH dependent behavior of the firefly bioluminescence: protein dynamics and water content in the active pocket.

scientific article

One-dimensional reaction coordinate and the corresponding potential of mean force from commitment probability distribution

scientific article published in April 2005

Performance of quasi-degenerate scaled opposite spin perturbation corrections to single excitation configuration interaction for excited state structures and excitation energies with application to the Stokes shift of 9-methyl-9,10-dihydro-9-silaphe

scientific article published in October 2009

Poly-cyclodextrin and poly-paclitaxel nano-assembly for anticancer therapy

scientific article published on 8 May 2014

Protein folding from heterogeneous unfolded state revealed by time-resolved X-ray solution scattering

scientific article published on 15 June 2020

Quartic-Scaling Analytical Gradient of Quasidegenerate Scaled Opposite Spin Second-Order Perturbation Corrections to Single Excitation Configuration Interaction

scientific article published in May 2009

Quasidegenerate scaled opposite spin second order perturbation corrections to single excitation configuration interaction

scientific article published in April 2008

Scaled second-order perturbation corrections to configuration interaction singles: efficient and reliable excitation energy methods

scientific article

Simple Method for Simulating the Mixture of Atomistic and Coarse-Grained Molecular Systems

scientific article

Simulations of the role of water in the protein-folding mechanism

scientific article

Solvent viscosity dependence of the protein folding dynamics

scientific article published on 30 January 2008

Spin-Vibronic Model for Quantitative Prediction of Reverse Intersystem Crossing Rate in Thermally Activated Delayed Fluorescence Systems

scientific article published on 31 December 2019

Studying interfacial reactions of cholesterol sulfate in an unsaturated phosphatidylglycerol layer with ozone using field induced droplet ionization mass spectrometry

scientific article published on 09 November 2011

The solvation interface is a determining factor in peptide conformational preferences

scientific article published on 05 December 2005

Toward monitoring the dissipative vibrational energy flows in open quantum systems by mixed quantum-classical simulations

scientific article published on 01 June 2020

Towards the realization of ab initio dynamics at the speed of molecular mechanics: simulations with interpolated diabatic Hamiltonian.

scientific article published on 30 July 2014

Two-oscillator mapping modification of the Poisson bracket mapping equation formulation of the quantum-classical Liouville equation

scientific article published on 01 December 2020

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