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List of works by Petr Man

14-3-3 protein binding blocks the dimerization interface of caspase-2

scientific article published on 21 January 2020

A Dynamic Core in Human NQO1 Controls the Functional and Stability Effects of Ligand Binding and Their Communication across the Enzyme Dimer

scientific article published on 12 November 2019

A highly diverse spectrum of naphthoquinone derivatives produced by the endophytic fungus Biatriospora sp. CCF 4378.

scientific article

A three-pronged "Pitchfork" strategy enables an extensive description of the human membrane proteome and the identification of missing proteins

scientific article published on 06 June 2019

Accessibility changes within diphtheria toxin T domain upon membrane penetration probed by hydrogen exchange and mass spectrometry.

scientific article

Accessibility changes within diphtheria toxin T domain when in the functional molten globule state, as determined using hydrogen/deuterium exchange measurements.

scientific article

Activation of macrophages by gliadin fragments: isolation and characterization of active peptide

scientific article published on 01 April 2002

Addressing proteolytic efficiency in enzymatic degradation therapy for celiac disease

scientific article published on 02 August 2016

Application of proteomics in the search for novel proteins associated with the anti-cancer effect of the synthetic cyclin-dependent kinases inhibitor, bohemine.

scientific article

Architecture of TAF11/TAF13/TBP complex suggests novel regulation properties of general transcription factor TFIID.

scientific article published on 7 November 2017

Aspartic protease nepenthesin-1 as a tool for digestion in hydrogen/deuterium exchange mass spectrometry.

scientific article

Asymmetric Preorganization of Inverted Pair Residues in the Sodium-Calcium Exchanger

scientific article published on 15 February 2016

Bacteriocin ASM1 is an O/S-diglycosylated, plasmid-encoded homologue of glycocin F

scientific article published on 12 December 2019

Biologically active metabolites produced by the basidiomycete Quambalaria cyanescens

scientific article

Blue native protein electrophoresis for studies of mouse polyomavirus morphogenesis and interactions between the major capsid protein VP1 and cellular proteins.

scientific article published on 24 August 2011

Bordetella pertussis and Bordetella bronchiseptica filamentous hemagglutinins are processed at different sites

scientific article published on 20 June 2018

Carboxylated calixarenes bind strongly to CD69 and protect CD69(+) killer cells from suicidal cell death induced by tumor cell surface ligands

scientific article published on 11 January 2010

Catalytic enhancement of the heme-based oxygen-sensing phosphodiesterase EcDOS by hydrogen sulfide is caused by changes in heme coordination structure.

scientific article

Characterization of the NADH:ubiquinone oxidoreductase (complex I) in the trypanosomatid Phytomonas serpens (Kinetoplastida)

scientific article published on 22 May 2007

Characterization of the lectin from females of Phlebotomus duboscqi sand flies.

scientific article

Chemical Cross-Linking and H/D Exchange for Fast Refinement of Protein Crystal Structure

scientific article published on 23 December 2011

Chimeric Cellobiose Dehydrogenases Reveal the Function of Cytochrome Domain Mobility for the Electron Transfer to Lytic Polysaccharide Monooxygenase

scientific article published on 24 December 2020

Chloride intracellular channel (CLIC) proteins function as fusogens

scientific article published in 2024

Cloning of the first human anti-JCPyV/VP1 neutralizing monoclonal antibody: epitope definition and implications in risk stratification of patients under natalizumab therapy

scientific article published on 5 June 2014

Comparison of amino acid compositions of peptides eluted from HLA-B27 molecules of healthy individuals and patients with ankylosing spondylitis

scientific article published on 15 November 2005

Conformational Dynamics and Interactions of Membrane Proteins by Hydrogen/Deuterium Mass Spectrometry

scientific article published in January 2016

Conformational changes in p47(phox) upon activation highlighted by mass spectrometry coupled to hydrogen/deuterium exchange and limited proteolysis

scientific article published on 2 February 2009

Conformational dynamics of the bovine mitochondrial ADP/ATP carrier isoform 1 revealed by hydrogen/deuterium exchange coupled to mass spectrometry.

scientific article published on 30 August 2010

Conserved cysteine dioxidation enhances membrane interaction of human Cl- intracellular channel 5

scientific article published on 17 June 2020

Conversion of a heme-based oxygen sensor to a heme oxygenase by hydrogen sulfide: effects of mutations in the heme distal side of a heme-based oxygen sensor phosphodiesterase (Ec DOS).

scientific article published on 5 June 2013

Coordination and redox state-dependent structural changes of the heme-based oxygen sensor AfGcHK associated with intraprotein signal transduction

scientific article published in November 2017

Crystal structure of native β-N-acetylhexosaminidase isolated from Aspergillus oryzae sheds light onto its substrate specificity, high stability, and regulation by propeptide

scientific article

Crystallization of nepenthesin I using a low-pH crystallization screen

scientific article published on January 2016

Cysteine S-glycosylation, a new post-translational modification found in glycopeptide bacteriocins

scientific article

Cysteine residues mediate high-affinity binding of thioredoxin to ASK1.

scientific article

Deciphering Dorin M glycosylation by mass spectrometry.

scientific article published on January 2008

Defining the interacting regions between apomyoglobin and lipid membrane by hydrogen/deuterium exchange coupled to mass spectrometry

scientific article published on 13 February 2007

Different Reaction Specificities of F420H2-Dependent Reductases Facilitate Pyrrolobenzodiazepines and Lincomycin To Fit Their Biological Targets

scientific article published on 28 January 2020

Different phenotypic outcome due to site-specific phosphorylation in the cancer-associated NQO1 enzyme studied by phosphomimetic mutations

scientific article published in 2022

Dynamic distinctions in the Na+/Ca2+ exchanger adopting the inward- and outward-facing conformational states

scientific article published in June 2017

Effective removal of nonionic detergents in protein mass spectrometry, hydrogen/deuterium exchange, and proteomics.

scientific article published in June 2010

Effects of hydrogen sulfide on the heme coordination structure and catalytic activity of the globin-coupled oxygen sensor AfGcHK.

scientific article

Ergochromes: Heretofore Neglected Side of Ergot Toxicity

scientific article published on 25 July 2019

Expression and characterization of plant aspartic protease nepenthesin-1 from Nepenthes gracilis

scientific article (publication date: March 2014)

Facile production of Aspergillus niger α-N-acetylgalactosaminidase in yeast.

scientific article published on 29 September 2011

Fluorescent labelled thiourea-bridged glycodendrons

scientific article

HSPA1A conformational mutants reveal a conserved structural unit in Hsp70 proteins

scientific article published on 30 October 2019

High-performance liquid chromatography-off line mass spectrometry analysis of anthraquinones produced by Geosmithia lavendula

scientific article published on 11 August 2010

High-throughput quantification of lincomycin traces in fermentation broth of genetically modified Streptomyces spp

scientific article published on 27 November 2006

Human Stress-inducible Hsp70 Has a High Propensity to Form ATP-dependent Antiparallel Dimers That Are Differentially Regulated by Cochaperone Binding

scientific article published on 20 November 2018

Human procaspase-2 phosphorylation at both S139 and S164 is required for 14-3-3 binding

scientific article

Hydroxylated anthraquinones produced by Geosmithia species.

scientific article published on 2 August 2009

Identification of a second Nutlin-3 responsive interaction site in the N-terminal domain of MDM2 using hydrogen/deuterium exchange mass spectrometry

scientific article

Identification of heme binding protein complexes in murine erythroleukemic cells: study by a novel two-dimensional native separation -- liquid chromatography and electrophoresis.

scientific article

Identification of the N-glycosylation sites on glutamate carboxypeptidase II necessary for proteolytic activity

scientific article

Impact of Chemical Cross-Linking on Protein Structure and Function.

scientific article published on 12 December 2017

Improving the Sequence Coverage of Integral Membrane Proteins during Hydrogen/Deuterium Exchange Mass Spectrometry Experiments

scientific article published on 13 August 2019

Insights into the pathogenesis of primary hyperoxaluria type I from the structural dynamics of alanine:glyoxylate aminotransferase variants

scholarly article published on 19 January 2024

Interaction of late apoptotic and necrotic cells with vitronectin

scientific article

Interdomain electron transfer in cellobiose dehydrogenase is governed by surface electrostatics.

scientific article published on 13 November 2016

Introduction of water into the heme distal side by Leu65 mutations of an oxygen sensor, YddV, generates verdoheme and carbon monoxide, exerting the heme oxygenase reaction

scientific article published on 24 June 2014

LC MALDI-TOF MS/MS and LC ESI FTMS analyses of HLA-B27 associated peptides isolated from peripheral blood cells.

scientific article

Large Propeptides of Fungal β-N-Acetylhexosaminidases Are Novel Enzyme Regulators That Must Be Intracellularly Processed to Control Activity, Dimerization, and Secretion into the Extracellular Environment†

scientific article published on 16 February 2007

Large-scale identification of membrane proteins based on analysis of trypsin-protected transmembrane segments.

scientific article published on 11 March 2016

Loss of stability and unfolding cooperativity in hPGK1 upon gradual structural perturbation of its N-terminal domain hydrophobic core

scientific article published in 2022

MS-Based Approaches Enable the Structural Characterization of Transcription Factor/DNA Response Element Complex

scientific article published on 26 September 2019

Mapping the Binding Site of a Cross-Reactive Plasmodium falciparum PfEMP1 Monoclonal Antibody Inhibitory of ICAM-1 Binding.

scientific article

Mass spectrometric analysis of the glycosphingolipid-enriched microdomains of rat natural killer cells.

scientific article published on January 2005

Modified electrophoretic and digestion conditions allow a simplified mass spectrometric evaluation of disulfide bonds.

scientific article

Molecular characterization of binding of calcium and carbohydrates by an early activation antigen of lymphocytes CD69

scientific journal article

Monitoring of in vitro deamidation of gliadin peptic fragment by mass spectrometry may reflect one of the molecular mechanisms taking place in celiac disease development

scientific article

Motif orientation matters: structural characterization of TEAD1 recognition of genomic DNA

scientific article published on 10 December 2020

Mouse Clr-g, a ligand for NK cell activation receptor NKR-P1F: crystal structure and biophysical properties

scientific article

N-glycosylated catalytic unit meets O-glycosylated propeptide: complex protein architecture in a fungal hexosaminidase.

scientific article published in November 2004

Native proteomic analysis of protein complexes in murine intestinal brush border membranes

scientific article published in January 2007

Neprosin, a Selective Prolyl Endoprotease for Bottom-up Proteomics and Histone Mapping

scientific article

Novel Entropically Driven Conformation-specific Interactions with Tomm34 Protein Modulate Hsp70 Protein Folding and ATPase Activities ⬇️

scientific article published on 4 March 2016

Oligomeric interface modulation causes misregulation of purine 5´-nucleotidase in relapsed leukemia.

scientific article

Peptides eluted from HLA-B27 of human splenocytes and blood cells reveal a similar but partially different profile compared to in vitro grown cell lines

scientific article published on 01 July 2004

Photoinduced damage of AsLOV2 domain is accompanied by increased singlet oxygen production due to flavin dissociation

scientific article published on 05 March 2020

Protein patterns of pig oocytes during in vitro maturation

scientific article

Proteome study ofFrancisella tularensis live vaccine strain-containing phagosome inBcg/Nramp1 congenic macrophages: Resistant allele contributes to permissive environment and susceptibility to infection ⬇️

scientific article published on January 1, 2002

Proteomic analysis of erythroid differentiation induced by hexamethylene bisacetamide in murine erythroleukemia cells

scientific article published on February 2007

Proteomic analysis of hepatic iron overload in mice suggests dysregulation of urea cycle, impairment of fatty acid oxidation, and changes in the methylation cycle

scientific article published on 15 February 2007

Proteomic analysis of iron overload in human hepatoma cells

scientific article published on 12 January 2006

Proteomics application exercise of the Swiss Proteomics Society: Report of the SPS'02 session

article

Purification and characterization of a saccharide-binding protein from penetration glands of Diplostomum pseudospathaceum--a bifunctional molecule with cysteine protease activity

scientific article published in July 2003

Recombinant Nepenthesin II for Hydrogen/Deuterium Exchange Mass Spectrometry.

scientific article

Recombinant Tyrosinase from Polyporus arcularius: Overproduction in Escherichia coli, Characterization, and Use in a Study of Aurones as Tyrosinase Effectors

scientific article published on 10 March 2016

Recombinant immobilized rhizopuspepsin as a new tool for protein digestion in hydrogen/deuterium exchange mass spectrometry

scientific article published in November 2009

Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments

scientific article published on 27 June 2019

Retraction notice to “Carboxylated calixarenes bind strongly to CD69 and protect CD69+ killer cells from suicidal cell death induced by tumor cell surface ligands” [Bioorg. Med. Chem. 18 (4) (2010) 1434–1440]

scientific article published on 01 June 2014

Role of the EF-hand-like motif in the 14-3-3 protein-mediated activation of yeast neutral trehalase Nth1.

scientific article

Separation of nuclear protein complexes by blue native polyacrylamide gel electrophoresis

scientific journal article

Sequence analysis and heterologous expression of the lincomycin biosynthetic cluster of the type strain Streptomyces lincolnensis ATCC 25466.

scientific article

Structural Basis for the 14-3-3 Protein-Dependent Inhibition of Phosducin Function

scientific article published in April 2017

Structural Characterization of Phosducin and Its Complex with the 14-3-3 Protein.

scientific article published on 13 May 2015

Structural Dynamics of Lytic Polysaccharide Monooxygenase during Catalysis

scientific article published on 05 February 2020

Structural Insight into the 14-3-3 Protein-dependent Inhibition of Protein Kinase ASK1 (Apoptosis Signal-regulating kinase 1).

scientific article published on 11 August 2016

Structural basis for the 14-3-3 protein-dependent inhibition of the regulator of G protein signaling 3 (RGS3) function

scientific article

Structural basis of heterotetrameric assembly and disease mutations in the human cis-prenyltransferase complex

scientific article published on 19 October 2020

Structural basis of the 14-3-3 protein-dependent activation of yeast neutral trehalase Nth1.

scientific article published on 29 May 2013

Structural characterization of the heme-based oxygen sensor, AfGcHK, its interactions with the cognate response regulator, and their combined mechanism of action in a bacterial two-component signaling system.

scientific article

Structural dynamics of Na+ and Ca2+ interactions with full-size mammalian NCX

scientific article published in 2024

Structural insight into the calcium ion modulated interdomain electron transfer in cellobiose dehydrogenase

scientific article published on 08 April 2015

Structural insights and in vitro reconstitution of membrane targeting and activation of human PI4KB by the ACBD3 protein

scientific article

Structural model of lymphocyte receptor NKR-P1C revealed by mass spectrometry and molecular modeling

article

Structure of the dimeric N-glycosylated form of fungal beta-N-acetylhexosaminidase revealed by computer modeling, vibrational spectroscopy, and biochemical studies.

scientific article

The H2O2-dependent activity of a fungal lytic polysaccharide monooxygenase investigated with a turbidimetric assay

scientific article published on 05 March 2020

The Isoforms of Rat Natural Killer Cell Receptor NKR-P1 Display a Distinct Binding of Complex Saccharide Ligands - RETRACTED

scientific article published in 2004

The assembly and intermolecular properties of the Hsp70-Tomm34-Hsp90 molecular chaperone complex

scientific article published on 24 February 2014

The combination of hydrogen/deuterium exchange or chemical cross-linking techniques with mass spectrometry: mapping of human 14-3-3ζ homodimer interface

scientific article published on 2 May 2012

The extracellular domain of Emiliania huxleyi HV1 mediates zinc binding and regulates channel function

scholarly article

The interaction of the mitochondrial protein importer TOMM34 with HSP70 is regulated by TOMM34 phosphorylation and binding to 14-3-3 adaptors

scientific article published on 05 May 2020

The tick plasma lectin, Dorin M, is a fibrinogen-related molecule

scientific article

The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding.

scientific article published on 13 November 2017

Thiopurine intolerance-causing mutations in NUDT15 induce temperature-dependent destabilization of the catalytic site

scientific article published on 10 January 2019

Utilization of high-accuracy FTICR-MS data in protein quantitation experiments

scientific article published in November 2009

VDAC2 and aldolase A identified as membrane proteins of K562 cells with increased expression under iron deprivation.

scientific article

VP1, the major capsid protein of the mouse polyomavirus, binds microtubules, promotes their acetylation and blocks the host cell cycle.

scientific article

p47phox molecular activation for assembly of the neutrophil NADPH oxidase complex

scientific article

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