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List of works by Jan Albert

A Method to Estimate the Size and Characteristics of HIV-positive Populations Using an Individual-based Stochastic Simulation Model

scientific article published on 24 November 2015

A Single Early Introduction of HIV-1 Subtype B into Central America Accounts for Most Current Cases ⬇️

scientific article published on April 24, 2013

A Single-Stranded Oligonucleotide Inhibits Toll-Like Receptor 3 Activation and Reduces Influenza A (H1N1) Infection

scientific article published on 12 September 2019

A new cell line-based neutralization assay for primary HIV type 1 isolates

scientific article

A real-time TaqMan PCR for routine quantitation of cytomegalovirus DNA in crude leukocyte lysates from stem cell transplant patients

scientific article published in June 2003

A simple and sensitive 'in-house' method for determining genotypic drug resistance in HIV-1

scientific article published on 01 January 2003

Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes

scientific article published on September 1994

Antiretroviral therapy does not induce HIV type 1-specific neutralizing activity against autologous HIV type 1 isolates

article

Antiretroviral treatment for HIV infection: Swedish recommendations 2016.

scientific article

Antiretroviral treatment for HIV infection: Swedish recommendations 2019

scientific article published on 11 January 2020

Antiretroviral treatment of HIV infection: Swedish recommendations 2005.

scientific article published in January 2006

Antiretroviral treatment of HIV infection: Swedish recommendations 2007.

scientific article published on January 2007

CCR5 or CXCR4 is required for efficient infection of peripheral blood mononuclear cells by promiscuous human immunodeficiency virus type 2 primary isolates

scientific article published in February 2002

COVID-19 Scenarios: an interactive tool to explore the spread and associated morbidity and mortality of SARS-CoV-2

scientific article published on 08 May 2020

Can the further clinical development of bevirimat be justified?

scientific article published in March 2010

Cerebrospinal fluid viral load, virus isolation, and intrathecal immunoactivation in HIV type 2 infection

scientific article published in July 2004

Challenges in modelling the proportion of undiagnosed HIV infections in Sweden

article

Challenges with using primer IDs to improve accuracy of next generation sequencing

scientific article published on 5 March 2015

Characterization of Binding of Magnetic Nanoparticles to Rolling Circle Amplification Products by Turn-On Magnetic Assay

scientific article published on 17 September 2019

Characterization of novel recombinant HIV-1 genomes using the branching index

scientific article published on November 2003

Coevolution of RANTES sensitivity and mode of CCR5 receptor use by human immunodeficiency virus type 1 of the R5 phenotype

scientific article published on November 2004

Coexistence of two clades of enterovirus D68 in pediatric Swedish patients in the summer and fall of 2014.

scientific article published on 14 May 2015

Comparison of HIV-1 resistance profiles in plasma RNA versus PBMC DNA in heavily treated patients in Honduras, a resource-limited country

scientific article published on 28 February 2012

Comparison of serologic and genetic porB-based typing of Neisseria gonorrhoeae: consequences for future characterization

scientific article published in September 2003

Comparison of variable region 3 sequences of human immunodeficiency virus type 1 from infected children with the RNA and DNA sequences of the virus populations of their mothers

scientific article

Contagiousness in treated HIV-1 infection

scientific article published on 12 October 2020

Coreceptor usage of HIV-1 isolates representing different genetic subtypes obtained from pregnant Cameroonian women. European Network for In Utero Transmission of HIV-1.

scientific article

Coreceptor usage of primary HIV type 1 isolates obtained from different lymph node subsets

scientific article published on 01 December 2005

Correction: Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis

scientific article

Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

scientific article published on 13 July 2017

Cross-reactive T-helper responses in patients infected with different subtypes of human immunodeficiency virus type 1.

scientific article published on May 2000

Daily Sampling of an HIV-1 Patient with Slowly Progressing Disease Displays Persistence of Multiple env Subpopulations Consistent with Neutrality ⬇️

scientific article published on August 2, 2011

Defining HIV-1 transmission clusters based on sequence data

scientific article

Delayed HIV diagnosis common in Sweden, 2003-2010

scientific article

Development and evaluation of an oligonucleotide ligation assay for detection of drug resistance-associated mutations in the human immunodeficiency virus type 2 pol gene.

scientific article published on 28 February 2007

Development and evaluation of the oligonucleotide ligation assay (OLA) for the detection of drug resistance mutations in HIV-2 patients on antiretroviral therapy.

scientific article

Differential pathogenesis of primary CCR5-using human immunodeficiency virus type 1 isolates in ex vivo human lymphoid tissue

scientific article published in September 2005

Distinct replicative and cytopathic characteristics of human immunodeficiency virus isolates

scientific article published on November 1988

Dual effect of interleukin 4 on HIV-1 expression: Implications for viral phenotypic switch and disease progression ⬇️

scientific article published on July 21, 1998

Dual tropism for macrophages and lymphocytes is a common feature of primary human immunodeficiency virus type 1 and 2 isolates ⬇️

scientific article published on October 1, 1994

Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing

scientific article

Dynamics of two separate but linked HIV-1 CRF01_AE outbreaks among injection drug users in Stockholm, Sweden, and Helsinki, Finland

scientific article

Easy and Accurate Reconstruction of Whole HIV Genomes from Short-Read Sequence Data

article

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

scientific article published in January 2018

Error rates, PCR recombination, and sampling depth in HIV-1 whole genome deep sequencing

scientific article published on 27 December 2016

Establishment and stability of the latent HIV-1 DNA reservoir

article

Establishment and stability of the latent HIV-1 DNA reservoir.

scientific article published on 15 November 2016

Estimates of HIV Transmitted Drug Resistance Can be Inflated Due to Natural Sequence Polymorphisms ⬇️

scientific article published on December 15, 2011

Estimating Time Of HIV-1 Infection From Next-Generation Sequence Diversity

article

Estimating time of HIV-1 infection from next-generation sequence diversity

scientific article published on 2 October 2017

Evaluation of bio-rad geenius HIV-1 and -2 assay as a confirmatory assay for detection of HIV-1 and -2 antibodies

scientific article

Evolution of DC-SIGN use revealed by fitness studies of R5 HIV-1 variants emerging during AIDS progression

scientific article published on 27 March 2008

Evolution of human immunodeficiency virus type 2 coreceptor usage, autologous neutralization, envelope sequence and glycosylation

scientific article published on December 2005

Expert consensus statement on the science of HIV in the context of criminal law

article

Fatal encephalitis associated with coronavirus OC43 in an immunocompromised child

scientific article published on 18 February 2020

Four SARS-CoV-2 Genome Sequences from Late April in Stockholm, Sweden, Reveal a Rare Mutation in the Spike Protein

scientific article published on 27 August 2020

Frequent Respiratory Viral Infections in Children with Febrile Neutropenia - A Prospective Follow-Up Study

scientific article

Genetic diversity in hepatitis C virus in Egypt and possible association with hepatocellular carcinoma

scientific article published on May 2007

Geographic and temporal trends in the molecular epidemiology and genetic mechanisms of transmitted HIV-1 drug resistance: an individual-patient- and sequence-level meta-analysis

scientific article

Getting more from heterogeneous HIV-1 surveillance data in a high immigration country: estimation of incidence and undiagnosed population size using multiple biomarkers

article

Global Dispersal Pattern of HIV Type 1 Subtype CRF01_AE: A Genetic Trace of Human Mobility Related to Heterosexual Sexual Activities Centralized in Southeast Asia

scientific article published on 15 December 2014

HIV biological variability unveiled: frequent isolations and chimeric receptors reveal unprecedented variation of coreceptor use.

scientific article published on December 2003

HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics

scientific article published on 14 January 2013

HIV-1 transmission between MSM and heterosexuals, and increasing proportions of circulating recombinant forms in the Nordic Countries

scientific article published on January 2016

HIV-1 transmission cluster with M41L 'singleton' mutation and decreased transmission of resistance in newly diagnosed Swedish homosexual men

scientific article published on 01 January 2006

HIV-2 genetic evolution in patients with advanced disease is faster than that in matched HIV-1 patients

scientific article

HIV‐1 evolution in relation to molecular epidemiology and antiretroviral resistance ⬇️

scientific article published on August 1, 2011

High intrapatient HIV-1 evolutionary rate is associated with CCR5-to-CXCR4 coreceptor switch.

scientific article published on 11 May 2013

Homogeneous Differential Magnetic Assay

scientific article published on 22 August 2019

How Much Do We Know about Drug Resistance Due to PrEP Use? Analysis of Experts' Opinion and Its Influence on the Projected Public Health Impact

scientific article

Human immunodeficiency virus type 1 is present in the cerebrospinal fluid of a majority of infected individuals

scientific article published on July 1992

Identification of two CRF11-cpx genomes and two preliminary representatives of a new circulating recombinant form (CRF13-cpx) of HIV type 1 in Cameroon.

scientific article published on August 2002

Immunodominant antigenic sites in primate immunodeficiency viruses and in vivo protection

scientific article

Impaired B cells survival upon production of inflammatory cytokines by HIV-1 exposed follicular dendritic cells.

scientific article published on 5 September 2016

Implications of HIV drug resistance on first- and second-line therapies in resource-limited settings: report from a workshop organized by the Collaborative HIV and Anti-HIV Drug Resistance Network

scientific article published on 5 June 2013

In vivo mutation rates and the landscape of fitness costs of HIV-1.

scientific article

In-vivo mutation rates and fitness landscape of HIV-1

article

Increase in transmitted drug resistance in migrants from Sub Saharan Africa diagnosed with HIV-1 in Sweden

scientific article published on 24 January 2018

Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe

scientific article

Increased sensitivity to broadly neutralizing antibodies of end-stage disease R5 HIV-1 correlates with evolution in Env glycosylation and charge

scientific article

Inference of Transmission Network Structure from HIV Phylogenetic Trees

scientific article

Inference of transmission network structure from HIV phylogenetic trees

article

Inferring transmission heterogeneity using virus genealogies: Estimation and targeted prevention

scientific article published on 03 September 2020

Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing

scientific article published on 01 January 2019

Introduction: HIV neutralizing antibodies: relevance to pathogenesis and vaccines.

scientific article published on July 2007

Limited cross-border infections in patients newly diagnosed with HIV in Europe

scientific article published on 3 April 2013

Link between the X4 phenotype in human immunodeficiency virus type 1-infected mothers and their children, despite the early presence of R5 in the child

scientific article published on 9 September 2002

Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy

scientific article

Longitudinal Ultradeep Characterization of HIV Type 1 R5 and X4 Subpopulations in Patients Followed from Primary Infection to Coreceptor Switch ⬇️

scientific article published on July 5, 2013

Low prevalence of transmitted drug resistance among newly diagnosed HIV‐1 patients in Latvia ⬇️

scientific article published on December 1, 2010

Low prevalence of transmitted drug resistance in patients newly diagnosed with HIV-1 infection in Sweden 2003-2010

scientific article

MT-2 cell tropism as prognostic marker for disease progression in human immunodeficiency virus type 1 infection

scientific article published on February 1994

Majority of CD4+ T cells from peripheral blood of HIV-1-infected individuals contain only one HIV DNA molecule

scientific article

Massive and rapid COVID-19 testing is feasible by extraction-free SARS-CoV-2 RT-PCR

scientific article published on 23 September 2020

Massive and rapid COVID-19 testing is feasible by extraction-free SARS-CoV-2 RT-qPCR

scientific article published on 18 April 2020

Microbial Translocation Correlates with the Severity of Both HIV‐1 and HIV‐2 Infections

scientific article published on 15 April 2010

Molecular and biological characterization of a replication competent human immunodeficiency type 2 (HIV-2) proviral clone

scientific article

Molecular epidemiology and the evolution of human coxsackievirus A6.

scientific article published on 29 September 2016

Molecular epidemiology of Neisseria gonorrhoeae: sequence analysis of the porB gene confirms presence of two circulating strains

scientific article

Monoclonal antibodies to native HIV type 1 reverse transcriptase and their interaction with enzymes from different subtypes

scientific article

Mt-2 Cell Tropism Of Human Immunodeficiency Virus Type 1 Isolates As A Marker For Response To Treatment And Development Of Drug Resistance

scientific article

Multiple HIV-1 introductions into the Swedish intravenous drug user population

scientific article published on 08 April 2008

Neopterin concentrations in cerebrospinal fluid and serum of individuals infected with HIV-1.

scientific article published in May 1989

Oral Antiretroviral Drugs as Public Health Tools for HIV Prevention: Global Implications for Adherence, Drug Resistance, and the Success of HIV Treatment Programs ⬇️

scientific article published on June 15, 2013

Outbreak of enterovirus D68 of the new B3 lineage in Stockholm, Sweden, August to September 2016

scientific article

PCR-induced transitions are the major source of error in cleaned ultra-deep pyrosequencing data

scientific article

Padlock Probe Assay for Detection and Subtyping of Seasonal Influenza

scientific article published on 26 September 2018

Patterns of transmitted HIV drug resistance in Europe vary by risk group

scientific article (publication date: 2014)

Peptide serology for analysis of the inter- and intra-individual variation in the HIV-1 V3 domain

scientific article

Performance of Ultra-Deep Pyrosequencing in Analysis of HIV-1 pol Gene Variation ⬇️

scientific article published on July 25, 2011

Performance of the Simplexa™ Flu A/B & RSV Direct Kit on respiratory samples collected in saline solution

scientific article published on 8 September 2014

Persistence of azidothymidine-resistant human immunodeficiency virus type 1 RNA genotypes in posttreatment sera

scientific article

Phylogenetic analysis of the Latvian HIV-1 epidemic

scientific article

Population genomics of intrapatient HIV-1 evolution ⬇️

scientific article

Potential impact of seasonal forcing on a SARS-CoV-2 pandemic

scientific article

Potential impact of seasonal forcing on a SARS-CoV-2 pandemic

scientific article published on 16 March 2020

Prevalence of transmitted HIV‐1 drug resistance among female sex workers and men who have sex with men in El Salvador, Central America ⬇️

scientific article published on October 1, 2012

Primary HIV-1 R5 isolates from end-stage disease display enhanced viral fitness in parallel with increased gp120 net charge

scientific article

Primary human immunodeficiency virus type 2 (HIV-2) isolates, like HIV-1 isolates, frequently use CCR5 but show promiscuity in coreceptor usage.

scientific article published on March 1999

Prophylaxis and treatment of HIV-1 infection in pregnancy - Swedish Recommendations 2017.

scientific article published on 24 January 2018

Prophylaxis and treatment of HIV-1 infection in pregnancy: Swedish Recommendations 2007.

scientific article published on January 2008

Prophylaxis and treatment of HIV-1 infection in pregnancy: Swedish Recommendations 2010

article

Prophylaxis and treatment of HIV-1 infection in pregnancy: Swedish recommendations 2013.

scientific article published on 22 April 2014

Pyrosequencing for detection of lamivudine-resistant hepatitis B virus

scientific article published on October 2004

Quality control assessment of human immunodeficiency virus type 2 (HIV-2) viral load quantification assays: results from an international collaboration on HIV-2 infection in 2006.

scientific article published on 23 April 2008

Quantification of HIV-1 using multiple competitors in a single-tube assay

scientific article

Rapid viral decay in simian immunodeficiency virus-infected macaques receiving quadruple antiretroviral therapy

scientific article

Replicative capacity, cytopathic effect and cell tropism of HIV.

scientific article

Reply to Redd et al

scientific article published in 2011

Risk of HIV transmission from patients on antiretroviral therapy: a position statement from the Public Health Agency of Sweden and the Swedish Reference Group for Antiviral Therapy

scientific article

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

scientific article published on 07 May 2020

Science in court: the myth of HIV fingerprinting

scientific article

Selection of human immunodeficiency virus type 1 R5 variants with augmented replicative capacity and reduced sensitivity to entry inhibitors during severe immunodeficiency.

scientific article

Sensitivity to inhibition by beta-chemokines correlates with biological phenotypes of primary HIV-1 isolates

scientific article published on December 1996

Short Communication: HIV Type 2 Dynamics

article

Short communication: high prevalence of drug resistance in HIV type 1-infected children born in Honduras and Belize 2001 to 2004.

scientific article published on 6 May 2011

Simple, sensitive, and specific detection of human immunodeficiency virus type 1 in clinical specimens by polymerase chain reaction with nested primers

scientific article published on July 1990

Six-week follow-up after HIV-1 exposure: a position statement from the Public Health Agency of Sweden and the Swedish Reference Group for Antiviral Therapy

scientific article published on 28 September 2015

Studies on toll-like receptor stimuli responsiveness in HIV-1 and HIV-2 infections

scientific article published on 17 April 2009

Tempo and mode of nucleotide substitutions in gag and env gene fragments in human immunodeficiency virus type 1 populations with a known transmission history

scientific article published in June 1997

Temporal trends in the Swedish HIV-1 epidemic: increase in non-B subtypes and recombinant forms over three decades

scientific article

The global spread of HIV-1 subtype B epidemic

scientific article

Therapy failure resulting from superinfection by a drug-resistant HIV variant

article

Timing and order of transmission events is not directly reflected in a pathogen phylogeny

scientific article

Towards Estimation of HIV-1 Date of Infection: A Time-Continuous IgG-Model Shows That Seroconversion Does Not Occur at the Midpoint between Negative and Positive Tests ⬇️

scientific article published on April 16, 2013

Towards an understanding of the migration of Crimean-Congo hemorrhagic fever virus

scientific article published on 7 October 2009

Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach

scientific article published on 20 May 2009

Transmission of HIV Drug Resistance and the Predicted Effect on Current First-line Regimens in Europe

scientific article published on 29 November 2015

Transmission of drug-resistant HIV-1 is stabilizing in Europe

scientific article published in November 2009

Transmission of the X4 Phenotype of HIV-1: Is There Evidence Against the "Random Transmission" Hypothesis? ⬇️

scientific article published on 05 December 2011

Transmitted drug resistance and type of infection in newly diagnosed HIV-1 individuals in Honduras

scientific article

Treatment of HIV infection: Swedish recommendations 2009.

scientific article published on January 2009

Treatment-associated polymorphisms in protease are significantly associated with higher viral load and lower CD4 count in newly diagnosed drug-naive HIV-1 infected patients

scientific article

Trends and predictors of transmitted drug resistance (TDR) and clusters with TDR in a local Belgian HIV-1 epidemic

scientific article (publication date: 2014)

Trends in Antiretroviral Therapy and Prevalence of HIV Drug Resistance Mutations in Sweden 1997–2011 ⬇️

scientific article published on March 22, 2013

Trends of HIV-1 incidence with credible intervals in Sweden 2002-09 reconstructed using a dynamic model of within-patient IgG growth

scientific article published in June 2015

Ugandan HIV-1 V3 loop sequences closely related to the U.S./European consensus

scientific article published on October 1, 1992

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

scientific article

Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial

scientific article

[Darwin's principles direct the development of A/H1N1. Influenza virus evolution enormously complex--the new influenza is not and exception]

scientific article published on 01 June 2009

pol gene sequence variation in Swedish HIV-2 patients failing antiretroviral therapy

scientific article published in July 2003

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