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List of works by So Nakagawa

A high-throughput detection method for the clonality of Human T-cell leukemia virus type-1-infected cells in vivo

scientific article published on 29 July 2020

A naturally occurring feline APOBEC3 variant that loses anti-lentiviral activity by lacking two amino acid residues.

scientific article published on 3 April 2018

A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer.

scientific article

A role for gorilla APOBEC3G in shaping lentivirus evolution including transmission to humans

scientific article published on 10 September 2020

Altered oligomeric states in pathogenic ALS2 variants associated with juvenile motor neuron diseases cause loss of ALS2-mediated endosomal function

scientific article published on 17 September 2018

Baton pass hypothesis: successive incorporation of unconserved endogenous retroviral genes for placentation during mammalian evolution

scientific article

Comparative genomic analysis of translation initiation mechanisms for genes lacking the Shine-Dalgarno sequence in prokaryotes

scientific article

Comprehensive genomic analysis reveals dynamic evolution of endogenous retroviruses that code for retroviral-like protein domains

scientific article published on 17 September 2020

Construction of an infectious clone of simian foamy virus of Japanese macaque (SFVjm) and phylogenetic analyses of SFVjm isolates.

scientific article published on 11 July 2014

Corrigendum to "Susceptibility of domestic animals to pseudotype virus bearing RD-114 virus envelope protein" [Gene 567(2) (2015) 189-195]

scientific article published on 15 January 2019

DNA-binding specificity changes in the evolution of forkhead transcription factors

scientific article published on 08 July 2013

Detection of pathogenic bacteria in the blood from sepsis patients using 16S rRNA gene amplicon sequencing analysis

scientific article published in PLoS ONE

Different effects of two mutations on the infectivity of Ebola virus glycoprotein in nine mammalian species

scientific article published on 4 January 2018

Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes

scientific article

Dynamic evolution of endogenous retrovirus-derived genes expressed in bovine conceptuses during the period of placentation

scientific article published on January 2013

Dynamic evolution of translation initiation mechanisms in prokaryotes

scientific article

Efficient differentiation and polarization of primary cultured neurons on poly(lactic acid) scaffolds with microgrooved structures

scientific article published on 21 April 2020

Experimental infection of Japanese macaques with simian retrovirus 5

scientific article published on 04 January 2019

Fematrin-1 Is Involved in Fetomaternal Cell-to-Cell Fusion in Bovinae Placenta and Has Contributed to Diversity of Ruminant Placentation ⬇️

scientific article published on July 17, 2013

Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution

scientific article published on 26 January 2021

Functional mutations in spike glycoprotein of Zaire ebolavirus associated with an increase in infection efficiency

scientific article published on 13 January 2017

Genetic diversity in the feline leukemia virus gag gene

scientific article published on 17 April 2015

Genetic diversity of feline morbilliviruses isolated in Japan

scientific article published on 11 April 2014

Genome evolution of SARS-CoV-2 and its virological characteristics

scientific article published on 10 August 2020

Hepatic niche leads to aggressive natural killer cell leukemia proliferation through transferrin-transferrin receptor 1 axis

scientific article published in 2023

Heterogeneity of koala retrovirus isolates

scientific article published on 12 November 2013

Human short tandem repeat identification using a nanopore-based DNA sequencer: a pilot study

scientific article published on 24 October 2019

Identification and functional analysis of three isoforms of bovine BST-2

scientific article

Identification of a distinct lineage of aviadenovirus from crane feces

scientific article published on 23 September 2019

Identification of a novel subgroup of Koala retrovirus from Koalas in Japanese zoos.

scientific article published on 3 July 2013

Infectious endogenous retroviruses in cats and emergence of recombinant viruses

scientific article

Molecular characterization of feline paramyxovirus in Japanese cat populations

scientific article published on 10 December 2019

Multiple invasions of an infectious retrovirus in cat genomes

scientific article

Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells

scientific article published on 01 May 2021

Nanopore-based single molecule sequencing of the D4Z4 array responsible for facioscapulohumeral muscular dystrophy.

scientific article published in November 2017

New World feline APOBEC3 potently controls inter-genus lentiviral transmission.

scientific article published on 10 April 2018

Novel endogenous retrovirus-derived transcript expressed in the bovine placenta is regulated by WNT signaling

scientific article published on 12 September 2017

Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences

scientific article published on 01 October 2019

Phylogenetic analyses reveal that simian foamy virus isolated from Japanese Yakushima macaques (Macaca fuscata yakui) is distinct from most of Japanese Hondo macaques (Macaca fuscata fuscata)

scientific article published on 21 January 2020

Phylogenetic and structural diversity in the feline leukemia virus env gene.

scientific article

Placental Development and Endogenous Retroviruses

scientific article published on January 2016

RD-114 virus story: from RNA rumor virus to a useful viral tool for elucidating the world cats' journey.

scientific article published on January 2016

RXRB Is an MHC-Encoded Susceptibility Gene Associated with Anti-Topoisomerase I Antibody-Positive Systemic Sclerosis.

scientific article

Rapid bacterial identification by direct PCR amplification of 16S rRNA genes using the MinION™ nanopore sequencer

article

Rapid sequencing-based diagnosis of infectious bacterial species from meningitis patients in Zambia

scientific article published on 05 November 2019

Real-time diagnostic analysis of MinION™-based metagenomic sequencing in clinical microbiology evaluation: a case report

scientific article published on 19 March 2019

Simian retrovirus 4 induces lethal acute thrombocytopenia in Japanese macaques

scientific article

Structure of protein interaction networks and their implications on drug design

scientific article

Susceptibility of domestic animals to a pseudotype virus bearing RD-114 virus envelope protein.

scientific article published on 30 April 2015

Systematic survey of non-retroviral virus-like elements in eukaryotic genomes

scientific article published on 6 February 2018

The Phylogeny of Placental Evolution Through Dynamic Integrations of Retrotransposons

scientific article published on 16 January 2017

Transcriptional regulation of two conceptus interferon tau genes expressed in Japanese black cattle during peri-implantation period

scientific article

Usefulness of next-generation DNA sequencing for the diagnosis of urinary tract infection

scientific article published on 27 February 2020

gEVE: a genome-based endogenous viral element database provides comprehensive viral protein-coding sequences in mammalian genomes

scientific article published on 30 May 2016

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