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List of works by Tong Zhu

A developmental transcriptional network for maize defines coexpression modules

scientific article published on 6 February 2013

A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function

scientific article

A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization

scientific article

A novel transcriptomic approach to identify candidate genes for grain quality traits in wheat

scientific article published in June 2009

A putative CCAAT-binding transcription factor is a regulator of flowering timing in Arabidopsis.

scientific article published on 13 July 2007

A single nuclear locus phylogeny of soybean based on DNA sequence

scientific article

Abscisic acid-induced modulation of metabolic and redox control pathways in Arabidopsis thaliana

scientific article published on 12 November 2008

Analysis of differential gene expression by ligation specificity-based transcript profiling

scientific article

Autophagy regulated by day length determines the number of fertile florets in wheat

scientific article

Characterization of the early response of Arabidopsis to Alternaria brassicicola infection using expression profiling.

scientific article

Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization

scientific article

Contribution of transcriptional regulation to natural variations in Arabidopsis.

scientific article

Crosstalk between cytosolic and plastidial pathways of isoprenoid biosynthesis in Arabidopsis thaliana

scientific article

Distinct regulation of salinity and genotoxic stress responses by Arabidopsis MAP kinase phosphatase 1.

scientific article published on December 2002

Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants

scientific article published on 01 January 2003

EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels.

scientific article published on 23 January 2007

EMF genes maintain vegetative development by repressing the flower program in Arabidopsis.

scientific article published on March 2003

Engineering herbicide-resistant maize using chimeric RNA/DNA oligonucleotides.

scientific article published on May 2000

Epigenetic regulation of gene programs by EMF1 and EMF2 in Arabidopsis

scientific article published on 25 September 2009

Epigenetic regulation of transcription in intermediate heterochromatin

scientific article published on 3 November 2006

Expression differences between normal and indeterminate1 maize suggest downstream targets of ID1, a floral transition regulator in maize

scientific article published on 10 October 2007

Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses.

scientific article

Expression profiles of Arabidopsis thaliana in mineral deficiencies reveal novel transporters involved in metal homeostasis.

scientific article

Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation

scientific article published on June 2004

Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array

scientific article published on 12 October 2004

Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions

scientific article published in July 2005

Finding unexpected patterns in microarray data.

scientific article

Gene expression phenotypes of Arabidopsis associated with sensitivity to low temperatures

scientific article published on 15 May 2003

Gene expression signatures from three genetically separable resistance gene signaling pathways for downy mildew resistance

scientific article published on 4 June 2004

Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity

scientific article published in November 2005

Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA

scientific article published on 21 September 2007

Genome-wide expression profiling of maize in response to individual and combined water and nitrogen stresses

scientific article

Genomic organization and evolution of the soybean SB92 satellite sequence

scientific article published in November 1995

Global analysis of gene expression using GeneChip microarrays.

scientific article published in October 2003

Global patterns of gene expression in the aleurone of wild-type and dwarf1 mutant rice

scientific article published on 29 December 2005

Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis

scientific article

High-definition genome profiling for genetic marker discovery.

scientific article published on 9 April 2007

Hypomethylated sequences: characterization of the duplicate soybean genome

scientific article published on 01 September 1994

Identification of nutrient partitioning genes participating in rice grain filling by singular value decomposition (SVD) of genome expression data

scientific article

Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling

scientific article published on 14 August 2009

Integrative analysis of transcript and metabolite profiling data sets to evaluate the regulation of biochemical pathways during photomorphogenesis.

scientific article

Large-scale identification of single-feature polymorphisms in complex genomes

scientific article published on March 2003

Large-scale profiling of the Arabidopsis transcriptome

scientific article published in December 2000

Metabolic and co-expression network-based analyses associated with nitrate response in rice

scientific article

Networks of transcription factors with roles in environmental stress response.

scientific article

Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding

scientific article

Orchestrated transcription of key pathways in Arabidopsis by the circadian clock

scientific article (publication date: 15 December 2000)

Quantitative cytology of the alfalfa generative cell and its relation to male plastid inheritance patterns in three genotypes

scientific article published on 01 January 1991

Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae

scientific article

Reduced expression of selected FASCICLIN-LIKE ARABINOGALACTAN PROTEIN genes associates with the abortion of kernels in field crops of Zea mays (maize) and of Arabidopsis seeds

scientific article published on 5 January 2018

Rice cytokinin GATA transcription Factor1 regulates chloroplast development and plant architecture

scientific article published on 2 April 2013

SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice

scientific article published on 21 August 2009

Single feature polymorphisms between two rice cultivars detected using a median polish method

scientific article

The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice.

scientific article

The STR120 satellite DNA of soybean: organization, evolution and chromosomal specificity

scientific article published on September 1, 1997

The maize root stem cell niche: a partnership between two sister cell populations

scientific article

The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis.

scientific article

The transcriptome of rhizobacteria-induced systemic resistance in arabidopsis.

scientific article

Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping

scientific article published in April 2003

Trait stacking in transgenic crops: challenges and opportunities.

scientific article published on July 2010

Transcription profile analyses identify genes and pathways central to root cap functions in maize

scientific article published in February 2006

Transcription profiling of the early gravitropic response in Arabidopsis using high-density oligonucleotide probe microarrays

scientific article

Transcriptional control of nutrient partitioning during rice grain filling

scientific article published in January 2003

Transcriptional profiling reveals novel interactions between wounding, pathogen, abiotic stress, and hormonal responses in Arabidopsis

scientific article

Transcriptome analysis of nitrogen-efficient rice over-expressing alanine aminotransferase.

scientific article

Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress

scientific article published on December 2002

Transcriptome response to nitrogen starvation in rice

scientific article published on 01 September 2012

Ubiquitination-mediated protein degradation and modification: an emerging theme in plant-microbe interactions.

scientific article

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