List of works by Rene S. Hendriksen

.Analysis of the contribution of bacteriophage ST64B to in vitro virulence traits of Salmonella enterica serovar Typhimurium

scientific article published on 9 December 2013

A metagenomic glimpse into the gut of wild and domestic animals: Quantification of antimicrobial resistance and more

scientific article published on 03 December 2020

An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes.

scientific article published on 29 November 2017

Antimicrobial resistance and molecular epidemiology of Salmonella Rissen from animals, food products, and patients in Thailand and Denmark

scientific article published on October 2008

Antimicrobial resistance in Salmonella spp. recovered from patients admitted to six different hospitals in Tehran, Iran from 2007 to 2008.

scientific article published on 4 February 2012

Antimicrobial resistance of zoonotic and commensal bacteria in Europe: the missing link between consumption and resistance in veterinary medicine

scientific article published on 03 February 2014

Antimicrobial susceptibilities, phage types, and molecular characterization of Salmonella enterica serovar Enteritidis from chickens and chicken meat in turkey

scientific article published in April 2009

Antimicrobial susceptibility and serovars of Salmonella from chickens and humans in Ibadan, Nigeria ⬇️

scientific article published on September 3, 2010

Antimicrobial-resistant Shigella infections from Iran: an overlooked problem?

scientific article

Application of different DNA extraction procedures, library preparation protocols and sequencing platforms: impact on sequencing results

scientific article published on 01 October 2019

Apramycin treatment affects selection and spread of a multidrug-resistant Escherichia coli strain able to colonize the human gut in the intestinal microbiota of pigs

scientific article

Association between antimicrobial resistance in Escherichia coli isolates from food animals and blood stream isolates from humans in Europe: an ecological study

scientific article

Audouin's gull, a potential vehicle of an extended spectrum β-lactamase producing Salmonella Agona

scientific article published on 4 December 2014

CHROMagar COL-APSE: a selective bacterial culture medium for the isolation and differentiation of colistin-resistant Gram-negative pathogens

scientific article

Carbapenemase VCC-1-Producing Vibrio cholerae in Coastal Waters of Germany

scientific article published on October 2017

Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and Environmental Sources in Thailand

scientific article

Characterization of Salmonella enterica serovar Enteritidis isolates recovered from blood and stool specimens in Thailand

scientific article

Characterization of Salmonella occurring at high prevalence in a population of the land iguana Conolophus subcristatus in Galápagos Islands, Ecuador

scientific article

Characterization of isolates of Salmonella enterica serovar Stanley, a serovar endemic to Asia and associated with travel

scientific article published on 11 January 2012

Comparative genomics of quinolone‐resistant and susceptible Campylobacter jejuni of poultry origin from major poultry producing European countries (GENCAMP)

Corrigendum: Occurrence and Characterization of mcr-1-Positive Escherichia coli Isolated From Food-Producing Animals in Poland, 2011-2016

scientific article published on 04 December 2019

Corrigendum: Surveillance and Genomics of Toxigenic Vibrio cholerae O1 From Fish, Phytoplankton and Water in Lake Victoria, Tanzania

scientific article published on 20 December 2019

Cross-Border Transmission of Salmonella Choleraesuis var. Kunzendorf in European Pigs and Wild Boar: Infection, Genetics, and Evolution

article

Detection of linezolid resistance due to the optrA gene in Enterococcus faecalis from poultry meat from the American continent (Colombia).

scientific article published on 20 December 2016

Detection of mcr-1 encoding plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection and imported chicken meat, Denmark 2015.

scientific article published on December 2015

Dissemination of clonal Salmonella enterica serovar Typhimurium isolates causing salmonellosis in Mauritius

scientific article published on 24 May 2013

Diversity and antimicrobial susceptibility of Salmonella enterica serovars isolated from pig farms in Ibadan, Nigeria

scientific article published on 28 July 2013

Draft Genome Sequence of subsp. Serotype Typhimurium Sequence Type 313, Isolated from India

Emergence and clonal dissemination of Salmonella enterica serovar Enteritidis causing salmonellosis in Mauritius

scientific article published on 15 April 2014

Emergence of a Clonal Lineage of Multidrug-Resistant ESBL-Producing Salmonella Infantis Transmitted from Broilers and Broiler Meat to Humans in Italy between 2011 and 2014.

scientific article

Emergence of multidrug-resistant salmonella concord infections in Europe and the United States in children adopted from Ethiopia, 2003-2007.

scientific article published in September 2009

Epidemiological investigation of Salmonella enterica serovar Kedougou in Thailand

scientific article published on 30 October 2010

Establishing streptomycin epidemiological cut-off values for Salmonella and Escherichia coli

scientific article published on 12 July 2011

Evaluation of temocillin for phenotypic carbapenemase screening of Escherichia coli and Salmonella enterica isolates in relation to the presence of genes encoding ESBLs and carbapenemase production

article

Extended-Spectrum ß-Lactamase-Producing <i>Escherichia coli</i> Among Humans, Beef Cattle, and Abattoir Environments in Nigeria

scientific article published on 07 April 2022

Extended-spectrum-beta-lactamases, AmpC beta-lactamases and plasmid mediated quinolone resistance in klebsiella spp. from companion animals in Italy

scientific article

External quality assurance system (EQAS) for identification of mastitis pathogens in Denmark from 2006 to 2011.

scientific article published on 27 November 2012

External quality assurance system for antibiotic resistance in bacteria of animal origin in Europe (ARBAO-II), 2003.

scientific article published on 30 January 2006

Extremely drug-resistant Salmonella enterica serovar Senftenberg infections in patients in Zambia

scientific article published on 17 October 2012

Final report of ENGAGE ‐ Establishing Next Generation sequencing Ability for Genomic analysis in Europe

First detection of linezolid resistance due to the optrA gene in enterococci isolated from food products in Denmark.

scientific article published on 20 May 2017

Genetic relatedness of multidrug resistant Escherichia coli isolated from humans, chickens and poultry environments

scientific article published on 23 March 2021

Genomic Epidemiology: Whole-Genome-Sequencing-Powered Surveillance and Outbreak Investigation of Foodborne Bacterial Pathogens

scientific article

Genomic dissection of travel-associated extended-spectrum-beta-lactamase-producing Salmonella enterica serovar typhi isolates originating from the Philippines: a one-off occurrence or a threat to effective treatment of typhoid fever?

scientific article

Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages

scientific article

Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic.

scientific article

Genomic insights into Vibrio cholerae O1 responsible for cholera epidemics in Tanzania between 1993 and 2017

scientific article published on 23 December 2019

Genomic signature of multidrug-resistant Salmonella enterica serovar typhi isolates related to a massive outbreak in Zambia between 2010 and 2012

scientific article

Genomics of an emerging clone of Salmonella serovar Typhimurium ST313 from Nigeria and the Democratic Republic of Congo

scientific article published on 15 October 2013

Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104.

scientific article

Global monitoring of Salmonella serovar distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: results of quality assured laboratories from 2001 to 2007.

scientific article

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

scientific article published on 08 March 2019

Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198

scientific article published on 20 May 2019

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

scientific article published on 08 July 2019

Human skin bacterial flora differ with altitudes in different ethnic groups of Nepal

scientific article published in 2019

Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B.

scientific article published on 18 September 2017

IncI1 ST3 and IncI1 ST7 plasmids from CTX-M-1-producing Escherichia coli obtained from patients with bloodstream infections are closely related to plasmids from E. coli of animal origin

scientific article published on 01 August 2019

Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response

scientific article

International spread of an epidemic population of Salmonella enterica serotype Kentucky ST198 resistant to ciprofloxacin.

scientific article published on 2 August 2011

International spread of multidrug-resistant Salmonella Schwarzengrund in food products

scientific article published on May 2007

Investigating Salmonella Eko from Various Sources in Nigeria by Whole Genome Sequencing to Identify the Source of Human Infections

scientific article

Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?

scientific article published on May 2016

Machine Learning Methods as a Tool for Predicting Risk of Illness Applying Next‐Generation Sequencing Data

scientific article published on 21 November 2018

Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering

scientific article published on 20 February 2020

Microbiologic and clinical features of Salmonella species isolated from bacteremic children in eastern Democratic Republic of Congo

scientific article published in June 2010

Molecular Epidemiology of mcr-Encoded Colistin Resistance in Enterobacteriaceae From Food-Producing Animals in Italy Revealed Through the EU Harmonized Antimicrobial Resistance Monitoring.

scientific article published on 12 June 2018

Molecular characterisation of multidrug-resistant Salmonella enterica serovar Typhimurium isolates from Gomel region, Belarus.

scientific article published on 13 August 2007

Molecular characterization and antimicrobial susceptibility of Salmonella isolates from infections in humans in Henan Province, China

scientific article published on 10 December 2008

Molecular characterization and occurrence of extended-spectrum beta-lactamase resistance genes among Salmonella enterica serovar Corvallis from Thailand, Bulgaria, and Denmark

scientific article published in January 2006

Molecular characterization of extended-spectrum cephalosporinase-producing Salmonella enterica serovar Choleraesuis isolates from patients in Thailand and Denmark

scientific article

Molecular clonality and antimicrobial resistance in Salmonella enterica serovars Enteritidis and Infantis from broilers in three Northern regions of Iran

scientific article

Multiplex PCR for detection of plasmid-mediated colistin resistance determinants, mcr-1, mcr-2, mcr-3, mcr-4 and mcr-5 for surveillance purposes

scientific article published in February 2018

Occurrence and Characterization of mcr-1-Positive Escherichia coli Isolated From Food-Producing Animals in Poland, 2011-2016

scientific article published on 08 August 2019

Occurrence and characterization of Salmonella Hiduddify from chickens and poultry meat in Nigeria

scientific article published in May 2009

Occurrence and characterization of Salmonella enterica subspecies enterica serovar 9,12:l,v:- strains from Bulgaria, Denmark, and the United States

scientific article published on 8 November 2008

Occurrence of Listeria spp. in retail meat and dairy products in the area of Addis Ababa, Ethiopia

scientific article published on 6 June 2013

Occurrence of Salmonella in retail beef and related meat products in Zaria, Nigeria

Occurrence of antimicrobial resistance among bacterial pathogens and indicator bacteria in pigs in different European countries from year 2002 - 2004: the ARBAO-II study

scientific article published on 13 June 2008

Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach

scientific article published on 10 October 2019

Persistence of fluoroquinolone-resistant Salmonella enterica serovar Kentucky from poultry and poultry sources in Nigeria

scientific article published on 13 March 2014

Phenotypic and genotypic comparison of salmonellae from diarrhoeic and healthy humans and cattle, Nigeria

scientific article

Plasmid-mediated quinolone resistance determinant qnrS1 detected in Salmonella enterica serovar Corvallis strains isolated in Denmark and Thailand

scientific article published on 16 July 2007

Population Genetic Structure of Listeria monocytogenes Strains as Determined by Pulsed-Field Gel Electrophoresis and Multilocus Sequence Typing

scientific article published on 27 May 2016

Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak

scientific article

Prevalence and antibiotic resistance of Salmonella isolated from a poultry farm and processing plant environment in the State of Kuwait

scientific article published in January 2007

Prevalence and characterization of human Shigella infections in Henan Province, China, in 2006.

scientific article

Prevalence of antimicrobial resistance among bacterial pathogens isolated from cattle in different European countries: 2002-2004.

scientific article published on 8 July 2008

Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets

scientific article published on 26 July 2019

Proficiency of WHO Global Foodborne Infections Network External Quality Assurance System Participants in Identification and Susceptibility Testing of Thermotolerant Campylobacter spp. from 2003 to 2012

scientific article published in 2018

Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities

scientific article

Reappearance of Salmonella serovar Choleraesuis var. Kunzendorf in Danish pig herds

scientific article published on 27 January 2015

Reply to "South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain".

scientific article published on November 2011

Results of use of WHO Global Salm-Surv external quality assurance system for antimicrobial susceptibility testing of Salmonella isolates from 2000 to 2007.

scientific article

Risk factors and epidemiology of the ten most common Salmonella serovars from patients in Thailand: 2002-2007.

scientific article published in October 2009

SCCmec Type IX Element in Methicillin Resistant Staphylococcusaureusspa Type t337 (CC9) Isolated from Pigs and Pork in Thailand

scientific article published on 22 March 2012

ST131 fimH22 Escherichia coli isolate with a blaCMY-2/IncI1/ST12 plasmid obtained from a patient with bloodstream infection: highly similar to E. coli isolates of broiler origin

scientific article published on 01 March 2019

Salmonella enterica serovar Typhimurium in Mauritius linked to consumption of marlin mousse.

scientific article

Salmonella serovars from humans and other sources in Thailand, 1993-2002

scientific article published in January 2004

Serotypes and antimicrobial resistance of Salmonella enterica ssp in central Thailand, 2001-2006.

scientific article published on November 2010

Serotyping, PCR, phage-typing and antibiotic sensitivity testing of Salmonella serovars isolated from urban drinking water supply systems of Nepal

scientific article

Shigella from humans in Thailand during 1993 to 2006: spatial-time trends in species and serotype distribution

scientific article published in December 2008

Spatio-temporal analysis of Salmonella surveillance data in Thailand.

scientific article

Surveillance and Genomics of Toxigenic O1 From Fish, Phytoplankton and Water in Lake Victoria, Tanzania

article

Symposium report: One Health meets sequencing

scientific article published on 08 August 2019

The Lake Chad Basin, an Isolated and Persistent Reservoir of Vibrio cholerae O1: A Genomic Insight into the Outbreak in Cameroon, 2010.

scientific article

The Salmonella enterica pan-genome

scientific article published on 4 June 2011

The first attempt of an active integrated laboratory-based Salmonella surveillance programme in the north-eastern region of Nigeria.

scientific article published on 13 August 2013

The global establishment of a highly-fluoroquinolone resistant Salmonella enterica serotype Kentucky ST198 strain

scientific article published on 18 December 2013

The invasome of Salmonella Dublin as revealed by whole genome sequencing

scientific article published on 4 August 2017

The role of the st313-td gene in virulence of Salmonella Typhimurium ST313.

scientific article published on 03 January 2014

Typhoid fever

scientific article (published 2015)

Using Genomics to Track Global Antimicrobial Resistance

scientific article published on 04 September 2019

Using next generation sequencing to tackle non-typhoidal Salmonella infections

scientific article published on 15 January 2013

WHO Global Salm-Surv external quality assurance system for serotyping of Salmonella isolates from 2000 to 2007.

scientific article published on July 2009

Whole-Genome Sequence of the First Sequence Type 27 Brucella ceti Strain Isolated from European Waters

scientific article published on 14 September 2017

Whole-Genome Sequencing Analysis of Nontyphoidal Salmonella enterica of Chicken Meat and Human Origin Under Surveillance in Sri Lanka

scientific article published on 21 May 2019

Worldwide human mitochondrial haplogroup distribution from urban sewage

scientific article published on 12 August 2019

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