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List of works by Yasuyuki Ohkawa

A One-Step Immunostaining Method to Visualize Rodent Muscle Fiber Type within a Single Specimen

scientific article

A chromatin integration labelling method enables epigenomic profiling with lower input

scientific article published on 10 December 2018

A cluster of noncoding RNAs activates the ESR1 locus during breast cancer adaptation.

scientific article published on 29 April 2015

A co-localization model of paired ChIP-seq data using a large ENCODE data set enables comparison of multiple samples

scientific article

A genome-wide analysis identifies a notch-RBP-Jκ-IL-7Rα axis that controls IL-17-producing γδ T cell homeostasis in mice

scientific article published on 26 November 2014

A panel of specific monoclonal antibodies directed against various phosphorylated histones H3.

scientific article

A rat monoclonal antibody against the chromatin remodeling factor CHD5.

scientific article

A triad of serum response factor and the GATA and NK families governs the transcription of smooth and cardiac muscle genes

scientific article published on 14 December 2001

Acute hyperglycemia impairs functional improvement after spinal cord injury in mice and humans

scientific article published on 01 October 2014

Age-related differences in cellular and molecular profiles of inflammatory responses after spinal cord injury

scientific article published on 01 April 2012

Alterations in Fetal Leydig Cell Gene Expression during Fetal and Adult Development

scientific article published on 14 December 2016

An Improved Restriction Enzyme Accessibility Assay for Analyzing Changes in Chromatin Structure in Samples of Limited Cell Number ⬇️

scientific article published on January 1, 2012

Anti-tumour effects of antimicrobial peptides, components of the innate immune system, against haematopoietic tumours in Drosophila mxc mutants

scientific article published on 18 June 2019

Author Correction: Senescence atlas reveals an aged-like inflamed niche that blunts muscle regeneration

scientific article published in 2023

Biochemical and immunological characterization of a novel monoclonal antibody against mouse leukotriene B4 receptor 1.

scientific article published on 18 September 2017

CHD8 haploinsufficiency results in autistic-like phenotypes in mice

scientific article published on 7 September 2016

Calcineurin-mediated pathway involved in the differentiated phenotype of smooth muscle cells

scientific article published in January 2003

Cdt1-binding protein GRWD1 is a novel histone-binding protein that facilitates MCM loading through its influence on chromatin architecture

scientific journal article

Cell-autonomous and redundant roles of Hey1 and HeyL in muscle stem cells: HeyL requires Hes1 to bind diverse DNA sites

scientific article published on 20 February 2019

Chd2 interacts with H3.3 to determine myogenic cell fate

scientific journal article

Chd2 regulates chromatin for proper gene expression toward differentiation in mouse embryonic stem cells

scientific article published on 26 May 2017

Chd5 Regulates MuERV-L/MERVL Expression in Mouse Embryonic Stem Cells Via H3K27me3 Modification and Histone H3.1/H3.2.

scientific article published on 11 September 2015

Chromatin accessibility and transcription factor binding at the PPARγ2 promoter during adipogenesis is protein kinase A-dependent.

scientific article

Chromatin architecture may dictate the target site for DMC1, but not for RAD51, during homologous pairing

scientific article published on 7 April 2016

Chromatin integration labeling for mapping DNA-binding proteins and modifications with low input

scientific article published on 17 August 2020

Chromatin loading of MCM hexamers is associated with di-/tri-methylation of histone H4K20 toward S phase entry

scientific article published on 01 December 2021

Chromatin remodelling in mammalian differentiation: lessons from ATP-dependent remodellers

scientific article

Chromatin-bound CRM1 recruits SET-Nup214 and NPM1c onto clusters causing aberrant expression in leukemia cells

scientific article published on 22 November 2019

Chromatin-prebound Crm1 recruits Nup98-HoxA9 fusion to induce aberrant expression of Hox cluster genes.

scientific article

Correction: PSMC5, a 19S proteasomal ATPase, regulates cocaine action in the nucleus accumbens

scientific article published on 25 June 2015

Cryo-EM structure of the nucleosome containing the ALB1 enhancer DNA sequence

scientific article published in March 2018

Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8.

scientific article published on 4 April 2017

Crystal structure of the overlapping dinucleosome composed of hexasome and octasome.

scientific article published in April 2017

Differential lactate and cholesterol synthetic activities in XY and XX Sertoli cells.

scientific article published on 02 February 2017

Direct Reprogramming of Spiral Ganglion Non-neuronal Cells into Neurons: Toward Ameliorating Sensorineural Hearing Loss by Gene Therapy

scientific article published on 14 February 2018

Direct isolation and RNA-seq reveal environment-dependent properties of engrafted neural stem/progenitor cells

scientific article published on January 2012

Direct reprogramming of human umbilical vein- and peripheral blood-derived endothelial cells into hepatic progenitor cells

scientific article published on 21 October 2020

Discriminative feature of cells characterizes cell populations of interest by a small subset of genes

scientific article published on 19 November 2021

Distribution of histone H4 modifications as revealed by a panel of specific monoclonal antibodies

scientific article

Dmrt factors determine the positional information of cerebral cortical progenitors via differential suppression of homeobox genes

scientific article published on 13 August 2019

Does ossification of the posterior longitudinal ligament affect the neurological outcome after traumatic cervical cord injury?

scientific article published on 01 May 2009

Engrafted Neural Stem/Progenitor Cells Promote Functional Recovery through Synapse Reorganization with Spared Host Neurons after Spinal Cord Injury.

scientific article published on 14 July 2015

Epiregulin as a major autocrine/paracrine factor released from ERK- and p38MAPK-activated vascular smooth muscle cells

scientific article

Establishment of neutralizing rat monoclonal antibodies for fibroblast growth factor-2

scientific article

Evolution of the sperm methylome of primates is associated with retrotransposon insertions and genome instability

scientific article published on 20 June 2017

Exploration of nucleosome positioning patterns in transcription factor function

scientific article published on 21 January 2016

Flow cytometric sorting of neuronal and glial nuclei from central nervous system tissue

scientific article published on 01 February 2011

GWAS of clinically defined gout and subtypes identifies multiple susceptibility loci that include urate transporter genes

scientific article published on 29 November 2016

Gene expression and functional abnormalities in XX/Sry Leydig cells

scientific article published on 12 January 2021

Generation of a monoclonal antibody for INI1/hSNF5/BAF47.

scientific article published on February 2014

Generation of a rat monoclonal antibody specific for Brm.

scientific article

Generation of a rat monoclonal antibody specific for CHD2.

scientific article

Generation of a rat monoclonal antibody specific for Pax7.

scientific article

Generation of a rat monoclonal antibody specific for heat shock cognate protein 70

scientific article published on 01 October 2010

Generation of a rat monoclonal antibody specific for hsp72

scientific article published on 01 August 2011

Genome-wide analysis of histone modifications in human endometrial stromal cells.

scientific article

Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells

scientific article published on 17 June 2020

Genomewide identification of target genes of histone methyltransferase dG9a during Drosophila embryogenesis

scientific article published on 3 September 2015

Glycolytic genes are targets of the nuclear receptor Ad4BP/SF-1.

scientific article published on 14 April 2014

H4K20me1 and H3K27me3 are concurrently loaded onto the inactive X chromosome but dispensable for inducing gene silencing

scientific article published on 19 February 2021

Heterochromatin Dynamics during the Differentiation Process Revealed by the DNA Methylation Reporter Mouse, Methyl

Heterochromatin dynamics during the differentiation process revealed by the DNA methylation reporter mouse, MethylRO.

scientific article

High-depth spatial transcriptome analysis by photo-isolation chemistry

scientific article published on 20 July 2021

Histone H3.3 sub-variant H3mm7 is required for normal skeletal muscle regeneration

scientific article published on 11 April 2018

Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis

scientific article published on 15 January 2016

Histone H4 lysine 20 acetylation is associated with gene repression in human cells

scientific article

Histone chaperone CAF-1 mediates repressive histone modifications to protect preimplantation mouse embryos from endogenous retrotransposons

scientific article

Histone methyltransferase G9a is a key regulator of the starvation-induced behaviors in Drosophila melanogaster

scientific article

Hsc70 contributes to cancer cell survival by preventing Rab1A degradation under stress conditions

scientific article

Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I.

scientific article published on 17 May 2013

Identification of Immunoglobulin Gene Sequences from a Small Read Number of mRNA-Seq Using Hybridomas

scientific article

Identification of low-abundance proteins in serum via the isolation of HSP72 complexes

scientific article published on 15 January 2016

Identification of miR-305, a microRNA that promotes aging, and its target mRNAs in Drosophila

scientific article published on 5 January 2018

Identification of myelin transcription factor 1 (MyT1) as a subunit of the neural cell type-specific lysine-specific demethylase 1 (LSD1) complex.

scientific article

Incorporation of histone H3.1 suppresses the lineage potential of skeletal muscle.

scientific article published on 24 December 2014

Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA.

scientific article published on October 2015

Interaction of reactive astrocytes with type I collagen induces astrocytic scar formation through the integrin-N-cadherin pathway after spinal cord injury

scientific article

Interleukin-10-producing plasmablasts exert regulatory function in autoimmune inflammation

scientific article published on 4 November 2014

Isolation and Characterization of Fetal Leydig Progenitor Cells of Male Mice

scientific article published on 23 December 2015

Isolation of nuclei from skeletal muscle satellite cells and myofibers for use in chromatin immunoprecipitation assays

scientific article

Kupffer cells induce Notch-mediated hepatocyte conversion in a common mouse model of intrahepatic cholangiocarcinoma

scientific article

LATS2 Positively Regulates Polycomb Repressive Complex 2.

scientific article

Ly6C+ Ly6G- Myeloid-derived suppressor cells play a critical role in the resolution of acute inflammation and the subsequent tissue repair process after spinal cord injury.

scientific article published on 15 January 2013

MED26 regulates the transcription of snRNA genes through the recruitment of little elongation complex

scientific article published on 9 January 2015

MRG15 is required for pre-mRNA splicing and spermatogenesis

scientific article published on 29 August 2016

Macrophage centripetal migration drives spontaneous healing process after spinal cord injury

scientific article published on 15 May 2019

Modeling population size independent tissue epigenomes by ChIL-seq with single thin sections

scientific article published on 01 November 2021

Monoclonal antibody specific for Dhx9/NDHII/RHA.

scientific article published on June 2010

Mutation of the SNF2 family member Chd2 affects mouse development and survival

scientific article published on 01 October 2006

Myeloperoxidase exacerbates secondary injury by generating highly reactive oxygen species and mediating neutrophil recruitment in experimental spinal cord injury

scientific article published on July 2012

Myogenin and the SWI/SNF ATPase Brg1 maintain myogenic gene expression at different stages of skeletal myogenesis

scientific article published on 27 December 2006

Opposing calcium-dependent signalling pathways control skeletal muscle differentiation by regulating a chromatin remodelling enzyme

scientific article

Ossification of the posterior longitudinal ligament of the lumbar spine: a case series

scientific article published on 01 November 2010

PSMC5, a 19S Proteasomal ATPase, Regulates Cocaine Action in the Nucleus Accumbens

scientific article published on 11 May 2015

Periostin Promotes Scar Formation through the Interaction between Pericytes and Infiltrating Monocytes/Macrophages after Spinal Cord Injury.

scientific article published on 9 January 2017

Persistent detection of alternatively spliced BCR-ABL variant results in a failure to achieve deep molecular response

scientific article published on 12 August 2017

Production of a monoclonal antibody for C/EBPβ: the subnuclear localization of C/EBPβ in mouse L929 cells

scientific article published on February 2014

Production of a rat monoclonal antibody against Brg1.

scientific article

Production of a rat monoclonal antibody specific for Myf5.

scientific article published on February 2010

Rat monoclonal antibody specific for MyoD.

scientific article published on June 2010

Rat monoclonal antibody specific for the chromatin remodeling factor, CHD1.

scientific article published on June 2010

Regulation of RNA polymerase II activation by histone acetylation in single living cells.

scientific article published on 21 September 2014

Role of Ad4-binding protein/steroidogenic factor 1 in regulating NADPH production in adrenocortical Y-1 cells

scientific article published on 14 February 2017

Roles of histone H3.5 in human spermatogenesis and spermatogenic disorders.

scientific article published on 27 November 2017

SWI/SNF chromatin remodeling complex is obligatory for BMP2-induced, Runx2-dependent skeletal gene expression that controls osteoblast differentiation

scientific journal article

SWI/SNF chromatin-remodeling complexes function in noncoding RNA-dependent assembly of nuclear bodies.

scientific article

Senescence atlas reveals an aged-like inflamed niche that blunts muscle regeneration

scientific article published in 2022

Sensitive detection of fluorescence in western blotting by merging images

scientific article published on 19 January 2018

Ser7 of RNAPII-CTD facilitates heterochromatin formation by linking ncRNA to RNAi

scientific article published on 13 December 2017

Sex determination. foxl3 is a germ cell-intrinsic factor involved in sperm-egg fate decision in medaka

scientific article

Skeletal muscle specification by myogenin and Mef2D via the SWI/SNF ATPase Brg1

scientific article

Spatial re-organization of myogenic regulatory sequences temporally controls gene expression

scientific article

SraTailor: graphical user interface software for processing and visualizing ChIP-seq data.

scientific article

Structure and function of human histone H3.Y nucleosome

scientific article

Subnuclear gene positioning through lamina association affects copper tolerance

scientific article published on 20 November 2020

Surf4 modulates STIM1-dependent calcium entry

scientific article published on 15 May 2012

TLR signals posttranscriptionally regulate the cytokine trafficking mediator sortilin.

scientific article published on 25 May 2016

Temporal regulation of chromatin during myoblast differentiation.

scientific article

Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis

scientific article published in January 2017

The Autism-Related Protein CHD8 Cooperates with C/EBPβ to Regulate Adipogenesis

scientific article published on 01 May 2018

The LTB4-BLT1 axis mediates neutrophil infiltration and secondary injury in experimental spinal cord injury

scientific article

The PPARγ locus makes long-range chromatin interactions with selected tissue-specific gene loci during adipocyte differentiation in a protein kinase A dependent manner

scientific article published on 20 January 2014

The classification of mRNA expression levels by the phosphorylation state of RNAPII CTD based on a combined genome-wide approach.

scientific article

The feasibility of in vivo imaging of infiltrating blood cells for predicting the functional prognosis after spinal cord injury.

scientific article published on 9 May 2016

The microphthalmia-associated transcription factor requires SWI/SNF enzymes to activate melanocyte-specific genes

scientific article

The novel heme-dependent inducible protein, SRRD regulates heme biosynthesis and circadian rhythms.

scientific article published on 9 August 2017

The protein arginine methyltransferase Prmt5 is required for myogenesis because it facilitates ATP-dependent chromatin remodeling

scientific article published on 16 October 2006

The requirement of Mettl3-promoted MyoD mRNA maintenance in proliferative myoblasts for skeletal muscle differentiation

scientific article

Therapeutic activities of engrafted neural stem/precursor cells are not dormant in the chronically injured spinal cord

scientific article published in August 2013

Thymine DNA glycosylase modulates DNA damage response and gene expression by base excision repair-dependent and independent mechanisms.

scientific article

Tissue-specific expression of histone H3 variants diversified after species separation

scientific article

Tmsb10 triggers fetal Leydig differentiation by suppressing the RAS/ERK pathway

scientific article published in 2022

Unusual nucleosome formation and transcriptome influence by the histone H3mm18 variant

scientific article published on 01 January 2022

Vascular remodeling induced by naturally occurring unsaturated lysophosphatidic acid in vivo

scientific article published on 22 September 2003

Wnt signaling regulates left-right axis formation in the node of mouse embryos

scientific article published on 21 May 2013

agplus: a rapid and flexible tool for aggregation plots

scientific article

miR-124 dosage regulates prefrontal cortex function by dopaminergic modulation

scientific article published on 05 March 2019

β-Catenin signaling regulates Foxa2 expression during endometrial hyperplasia formation.

scientific article published on 3 September 2012

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