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List of works by Matti Nykter

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The evolutionary history of lethal metastatic prostate cancer

scientific article published on April 2015
Circulating plasma MiR-141 is a novel biomarker for metastatic colon cancer and predicts poor prognosis

scientific article
Integrated analyses identify a master microRNA regulatory network for the mesenchymal subtype in serous ovarian cancer

scientific article published on February 2013
Function of C/EBPdelta in a regulatory circuit that discriminates between transient and persistent TLR4-induced signals

scientific article published on 8 March 2009
Genomic Alterations in Cell-Free DNA and Enzalutamide Resistance in Castration-Resistant Prostate Cancer

scientific article
The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma

scientific article published on 9 January 2013
Driver Fusions and Their Implications in the Development and Treatment of Human Cancers

scientific article published in April 2018
Circulating tumor DNA genomics correlate with resistance to abiraterone and enzalutamide in prostate cancer

scientific article published on 24 January 2018
Gene expression dynamics in the macrophage exhibit criticality

scholarly article
Insulin-like growth factor-binding protein 2-driven glioma progression is prevented by blocking a clinically significant integrin, integrin-linked kinase, and NF-κB network

scientific article published on 15 February 2012
Loss of PTEN is associated with aggressive behavior in ERG-positive prostate cancer

scientific article
Concordance of Circulating Tumor DNA and Matched Metastatic Tissue Biopsy in Prostate Cancer.

scientific article published in December 2017
Gene-pair expression signatures reveal lineage control

scientific article
Treatment Outcomes and Tumor Loss of Heterozygosity in Germline DNA Repair-deficient Prostate Cancer

scientific article
Ageing-associated changes in the human DNA methylome: genomic locations and effects on gene expression.

scientific article published on 14 March 2015
Two mature products of MIR-491 coordinate to suppress key cancer hallmarks in glioblastoma

scientific article
Circulating Tumor DNA Reveals Clinically Actionable Somatic Genome of Metastatic Bladder Cancer.

scientific article published on 31 July 2017
Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression

scientific article
Androgen Receptor Deregulation Drives Bromodomain-Mediated Chromatin Alterations in Prostate Cancer

scientific article published on June 2017
Transcriptome Sequencing Reveals PCAT5 as a Novel ERG-Regulated Long Noncoding RNA in Prostate Cancer.

scientific article published on 17 August 2015
A linear model for transcription factor binding affinity prediction in protein binding microarrays

scientific article
Integrative proteomics in prostate cancer uncovers robustness against genomic and transcriptomic aberrations during disease progression

scientific article published on 21 March 2018
Integrative genomic characterization and a genomic staging system for gastrointestinal stromal tumors

scientific article
Genomic and Molecular Characterization of Malignant Peripheral Nerve Sheath Tumor Identifies the IGF1R Pathway as a Primary Target for Treatment

scientific article published on October 31, 2011
Transcriptional analysis reveals gender-specific changes in the aging of the human immune system.

scientific article published on 11 June 2013
Circulating Tumor DNA Abundance and Potential Utility in De Novo Metastatic Prostate Cancer

scientific article published on 10 January 2019
MiR-1247-5p is overexpressed in castration resistant prostate cancer and targets MYCBP2.

scientific article
Epigenetically altered miR-193b targets cyclin D1 in prostate cancer

scientific article
Chromatin accessibility is associated with CRISPR-Cas9 efficiency in the zebrafish (Danio rerio).

scientific article published on 23 April 2018
Oncogenic K-Ras upregulates ITGA6 expression via FOSL1 to induce anoikis resistance and synergizes with αV-Class integrins to promote EMT.

scientific article published on 12 June 2017
Simulation of microarray data with realistic characteristics.

scientific article
Biological Information as Set-Based Complexity

scientific article published on 25 February 2010
Mutational Landscapes of Smoking-Related Cancers in Caucasians and African Americans: Precision Oncology Perspectives at Wake Forest Baptist Comprehensive Cancer Center

scientific article
Twist predicts poor outcome of patients with astrocytic glioma

scientific article published on 10 July 2015
Circulating mutational portrait of cancer: manifestation of aggressive clonal events in both early and late stages.

scientific article
Genome-wide repression of eRNA and target gene loci by the ETV6-RUNX1 fusion in acute leukemia

scientific article published on 12 September 2016
Integrated clinical, whole-genome, and transcriptome analysis of multisampled lethal metastatic prostate cancer.

scientific article published on May 2016
Recurrent SKIL-activating rearrangements in ETS-negative prostate cancer.

scientific article published on March 2015
Transcriptome and small RNA deep sequencing reveals deregulation of miRNA biogenesis in human glioma

scientific article published on February 2013
Recurrent LRP1-SNRNP25 and KCNMB4-CCND3 fusion genes promote tumor cell motility in human osteosarcoma

scientific article
Microseminoprotein-Beta Expression in Different Stages of Prostate Cancer

scientific article
Information diversity in structure and dynamics of simulated neuronal networks

scientific article published on June 2011
Quantitative analysis of colony morphology in yeast

scientific article
Leukemia prediction using sparse logistic regression

scientific article
Cancer genome sequencing: understanding malignancy as a disease of the genome, its conformation, and its evolution.

scientific article
Computational Characterization of Suppressive Immune Microenvironments in Glioblastoma

scientific article published on 19 June 2018
Constitutively active androgen receptor splice variants AR-V3, AR-V7 and AR-V9 are co-expressed in castration-resistant prostate cancer metastases

scientific article published on 10 July 2018
A data integration framework for prediction of transcription factor targets

scientific article
Proprotein convertase subtilisin/kexin type 7 (PCSK7) is essential for the zebrafish development and bioavailability of transforming growth factor β1a (TGFβ1a).

scientific article published on 31 October 2013
Characterization of aberrant pathways across human cancers

scientific article

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