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Authors whose works are in public domain in at least one jurisdiction

List of works by Wietse de Boer

'Root-food' and the rhizosphere microbial community composition

article

13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline

scientific article published on 13 March 2012

A 3-year study reveals that plant growth stage, season and field site affect soil fungal communities while cultivar and GM-trait have minor effects

scientific article

A fragrant neighborhood: volatile mediated bacterial interactions in soil

scientific article

A molecular biological protocol to distinguish potentially human pathogenic Stenotrophomonas maltophilia from plant-associated Stenotrophomonas rhizophila

scientific article published in November 2005

A thready affair: linking fungal diversity and community dynamics to terrestrial decomposition processes

scientific article published on 10 October 2012

Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood

scientific article

Anti-fungal properties of chitinolytic dune soil bacteria

article by Wietse de Boer et al published February 1998 in Soil Biology and Biochemistry

Antifungal Rhizosphere Bacteria Can increase as Response to the Presence of Saprotrophic Fungi

scientific article published on 22 September 2015

Biodiversity and ecology of soil fungi in a primary succession of a temperate coastal dune system

scientific article published in 2014

Biological activities associated with the volatile compound 2,5-bis(1-methylethyl)-pyrazine

scientific article published on 01 February 2019

Biosynthetic genes and activity spectrum of antifungal polyynes from Collimonas fungivorans Ter331.

scientific article

Calling from distance: attraction of soil bacteria by plant root volatiles

scientific article published on 22 January 2018

Changing soil legacies to direct restoration of plant communities

scientific article published on 23 August 2017

Chapter 8 Interactions between saprotrophic basidiomycetes and bacteria

scholarly article published 2008

Collimonas arenae sp. nov. and Collimonas pratensis sp. nov., isolated from (semi-)natural grassland soils.

scientific article

Collimonas fungivorans gen. nov., sp. nov., a chitinolytic soil bacterium with the ability to grow on living fungal hyphae

scientific article

Comparative analysis of gene sequences encoding ammonia monooxygenase of Nitrosospira sp. AHB1 and Nitrosolobus multiformis C-71.

scientific article published in November 1995

Comparative genomics of bacteria from the genus Collimonas: linking (dis)similarities in gene content to phenotypic variation and conservation.

scientific article

Comparative genomics of the pIPO2/pSB102 family of environmental plasmids: sequence, evolution, and ecology of pTer331 isolated from Collimonas fungivorans Ter331.

scientific article

Comparison of nutrient acquisition in exotic plant species and congeneric natives

article

Competition increases sensitivity of wheat (Triticum aestivum) to biotic plant-soil feedback.

scientific article

Context dependency and saturating effects of loss of rare soil microbes on plant productivity

scientific article published on 30 June 2015

Contribution of nitrification and denitrification to the no and N2O emissions of an acid forest soil, a river sediment and a fertilized grassland soil

Controlling the Microbiome: Microhabitat Adjustments for Successful Biocontrol Strategies in Soil and Human Gut.

scientific article published on 13 July 2016

Controls on coarse wood decay in temperate tree species: birth of the LOGLIFE experiment

scientific article (publication date: 2012)

Degradation of ethinyl estradiol by nitrifying activated sludge

scientific article

Different selective effects on rhizosphere bacteria exerted by genetically modified versus conventional potato lines.

scientific article published on 03 July 2013

Dinner in the dark: Illuminating drivers of soil organic matter decomposition

article

Disruption of root carbon transport into forest humus stimulates fungal opportunists at the expense of mycorrhizal fungi

scientific article published on 11 March 2010

Draft genome sequence of the antagonistic rhizosphere bacterium Serratia plymuthica strain PRI-2C.

scientific article published on August 2012

Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger

scientific article published on 26 May 2011

Early colonizers of unoccupied habitats represent a minority of the soil bacterial community

scientific article published on 15 March 2015

Ectomycorrhizal Cortinarius species participate in enzymatic oxidation of humus in northern forest ecosystems

scientific article published on 14 April 2014

Editorial: special issue on the ecology of soil microorganisms

scientific article published on 01 December 2019

Effect of the amount of organic trigger compounds, nitrogen and soil microbial biomass on the magnitude of priming of soil organic matter.

scientific article

Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms

scientific article

Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition

article

Environmental exposure assessment of ethinyl estradiol (EE) from a combined hormonal vaginal contraceptive ring after disposal; leaching from landfills

scientific article

Evaluation of a simple, non-alkaline extraction protocol to quantify soil ergosterol

article by Annelies S. de Ridder-Duine et al published September 2006 in Pedobiologia

Exploring bacterial interspecific interactions for discovery of novel antimicrobial compounds

scientific article

Exploring the genomic traits of fungus-feeding bacterial genus Collimonas

scientific article published on 24 December 2015

Exploring the reservoir of potential fungal plant pathogens in agricultural soil

scientific article published in December 2017

Filipin is a reliable in situ marker of ergosterol in the plasma membrane of germinating conidia (spores) of Penicillium discolor and stains intensively at the site of germ tube formation.

scientific article

Fungal biomass development in a chronosequence of land abandonment

article

Fungal diversity and potential tree pathogens in decaying logs and stumps

scientific article published in 2017

Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C

scientific article

Fungistasis and general soil biostasis – A new synthesis

Fungus-associated bacteriome in charge of their host behavior

scientific article published on 30 July 2016

Genomic comparison of chitinolytic enzyme systems from terrestrial and aquatic bacteria

scientific article published on 20 June 2014

Growth of chitinolytic dune soil beta-subclass Proteobacteria in response to invading fungal hyphae ⬇️

scientific article

Harnessing the microbiome to control plant parasitic weeds

scientific article published on 01 June 2019

Heterodera schachtii nematodes interfere with aphid-plant relations on Brassica oleracea. ⬇️

scientific article published on 8 September 2013

Identification and characterization of genes underlying chitinolysis in Collimonas fungivorans Ter331.

scientific article published on 30 July 2008

Impact of Collimonas bacteria on community composition of soil fungi

scientific article

Impact of interspecific interactions on antimicrobial activity among soil bacteria

scientific article published on 28 October 2014

Impact of matric potential and pore size distribution on growth dynamics of filamentous and non-filamentous soil bacteria

scientific article

Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil

scientific article published in February 2008

In vitro suppression of fungi caused by combinations of apparently non-antagonistic soil bacteria

scientific article published in January 2007

Initial decay of woody fragments in soil is influenced by size, vertical position, nitrogen availability and soil origin

Inter-specific interactions between carbon-limited soil bacteria affect behavior and gene expression

scientific article published on 7 March 2009

Legacy effects of anaerobic soil disinfestation on soil bacterial community composition and production of pathogen-suppressing volatiles.

scientific article published on 10 July 2015

Legacy effects of diversity in space and time driven by winter cover crop biomass and nitrogen concentration

article

Legacy of land use history determines reprogramming of plant physiology by soil microbiome

scientific article published in 2018

Living in a fungal world: impact of fungi on soil bacterial niche development

scientific article

Low abundant soil bacteria can be metabolically versatile and fast growing

scientific article published on 24 November 2016

Matgrass sward plant species benefit from soil organisms

article

Mechanism of antibacterial activity of the white-rot fungus Hypholoma fasciculare colonizing wood.

scientific article published in May 2010

Methods for Baiting and Enriching Fungus-Feeding (Mycophagous) Rhizosphere Bacteria

scientific article published on 22 December 2015

Methylovirgula ligni gen. nov., sp. nov., an obligately acidophilic, facultatively methylotrophic bacterium with a highly divergent mxaF gene

scientific article

Microbial Small Talk: Volatiles in Fungal-Bacterial Interactions

scientific article

Microbial community composition affects soil fungistasis

scientific article

Mycophagous growth of Collimonas bacteria in natural soils, impact on fungal biomass turnover and interactions with mycophagous Trichoderma fungi

scientific article published on 16 October 2008

Neglected role of fungal community composition in explaining variation in wood decay rates.

scientific article published on January 2015

Nitrosomonas europaea-like bacteria detected as the dominant β-subclass Proteobacteria ammonia oxidisers in reference and limed acid forest soils

No Paradox for Invasive Plants

scientific article published in Science

No apparent costs for facultative antibiotic production by the soil bacterium Pseudomonas fluorescens Pf0-1.

scientific article

Non-random species loss in bacterial communities reduces antifungal volatile production

scientific article published on August 2015

Oxalic acid: a signal molecule for fungus-feeding bacteria of the genus Collimonas?

scientific article

Pairwise Transcriptomic Analysis of the Interactions Between the Ectomycorrhizal Fungus Laccaria bicolor S238N and Three Beneficial, Neutral and Antagonistic Soil Bacteria

article

Pathogen suppression by microbial volatile organic compounds in soils

scientific article published on 01 August 2019

Patterns of natural fungal community assembly during initial decay of coniferous and broadleaf tree logs

scientific article published in 2016

Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood

scientific article published on 11 June 2009

Phylogeny-function analysis of (meta)genomic libraries: screening for expression of ribosomal RNA genes by large-insert library fluorescent in situ hybridization (LIL-FISH).

scientific article published in September 2004

Plant presence reduces root and shoot litter decomposition rates of crops and wild relatives

scientific article published on 18 March 2019

Plant–soil feedbacks of exotic plant species across life forms: a meta-analysis

article

Possible Mechanism for Spontaneous Establishment ofCalluna vulgarisin a Recently Abandoned Agricultural Field

article by Annemieke van der Wal et al published March 2009 in Restoration Ecology

Possible role of reactive chlorine in microbial antagonism and organic matter chlorination in terrestrial environments

scientific article published on 28 April 2009

Reciprocal effects of litter from exotic and congeneric native plant species via soil nutrients ⬇️

scientific article

Reduction of rare soil microbes modifies plant-herbivore interactions.

scientific article published on 11 January 2010

Relationship between home-field advantage of litter decomposition and priming of soil organic matter

scientific article published on 17 August 2018

Relative abundance and activity of melanized hyphae in different soil ecosystems

Restoration of species-rich grasslands on ex-arable land: Seed addition outweighs soil fertility reduction

article

Rhizosphere bacteria from sites with higher fungal densities exhibit greater levels of potential antifungal properties

Rhizosphere bacterial community composition in natural stands of Carex arenaria (sand sedge) is determined by bulk soil community composition

article

Secondary transport of amino acids in Nitrosomonas europaea

scholarly article by Maarten J. Frijlink published in April 1992

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

scientific article

Soil and Freshwater and Marine Sediment Food Webs: Their Structure and Function

Soil biotic legacy effects of extreme weather events influence plant invasiveness ⬇️

scientific article published on May 28, 2013

Soil networks become more connected and take up more carbon as nature restoration progresses.

scientific article

Soil-wood interactions: Influence of decaying coniferous and broadleaf logs on composition of soil fungal communities

article

Specific detection and real-time PCR quantification of potentially mycophagous bacteria belonging to the genus Collimonas in different soil ecosystems

scientific article published on 4 May 2007

Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

scientific article

Strategies to Maintain Natural Biocontrol of Soil-Borne Crop Diseases During Severe Drought and Rainfall Events

scientific article published in 2018

Suppression of soil-borne Fusarium pathogens of peanut by intercropping with the medicinal herb Atractylodes lancea

scholarly article by Xiaogang Li et al published January 2018 in Soil Biology and Biochemistry

The bacterial genus Collimonas: mycophagy, weathering and other adaptive solutions to life in oligotrophic soil environments

scientific article published on 22 July 2009

The bioenergetics of ammonia and hydroxylamine oxidation in Nitrosomonas europaea at acid and alkaline pH

scholarly article by Maarten J. Frijlink published in January 1992

The capacity to comigrate with Lyophyllum sp. strain Karsten through different soils is spread among several phylogenetic groups within the genus Burkholderia

scholarly article by R Nazir et al published July 2012 in Soil Biology and Biochemistry

The prey's scent - Volatile organic compound mediated interactions between soil bacteria and their protist predators.

scientific article

The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria

scholarly article by Max-Bernhard Ballhausen & Wietse de Boer published November 2016 in Soil Biology and Biochemistry

Trait Differentiation within the Fungus-Feeding (Mycophagous) Bacterial Genus Collimonas

scientific article

Transcriptional and antagonistic responses of Pseudomonas fluorescens Pf0-1 to phylogenetically different bacterial competitors

scientific article published on 13 January 2011

Unexpected role of canonical aerobic methanotrophs in upland agricultural soils

scientific article published in 2019

Unexpected stimulation of soil methane uptake as emergent property of agricultural soils following bio-based residue application.

scientific article published on 13 May 2015

Upscaling of fungal-bacterial interactions: from the lab to the field

scientific article

Ureolytic nitrification at low pH by Nitrosospira spec

scholarly article by Wietse de Boer published in July 1989

Volatile affairs in microbial interactions

scientific article published on 29 May 2015

Volatile-mediated antagonism of soil bacterial communities against fungi

scientific article published on 04 November 2019

Volatile-mediated interactions between phylogenetically different soil bacteria

scientific article

Volatile-mediated suppression of plant pathogens is related to soil properties and microbial community composition

article

Volatiles in Inter-Specific Bacterial Interactions

scientific article

Volatiles produced by the mycophagous soil bacterium Collimonas

scientific article published on 12 December 2013

Winter cover crop legacy effects on litter decomposition act through litter quality and microbial community changes

article

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