List of works by Ana Tereza R Vasconcelos

A System for Automated Bacterial (genome) Integrated Annotation--SABIA

scientific article published on 15 April 2004

A cellular automata-based mathematical model for thymocyte development

scientific article

A comparative in silico linear B-cell epitope prediction and characterization for South American and African Trypanosoma vivax strains.

scientific article published on 27 February 2018

A new set of bioinformatics tools for genome projects

scientific article published on 31 March 2004

A potential source for cellulolytic enzyme discovery and environmental aspects revealed through metagenomics of Brazilian mangroves

scientific article

A re-annotation of the Anopheles darlingi mobilome

scientific article published on 21 January 2019

AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services

scientific article

Abrolhos bank reef health evaluated by means of water quality, microbial diversity, benthic cover, and fish biomass data

scientific article (publication date: 2012)

Adaptive processes of Staphylococcus aureus isolates during the progression from acute to chronic bone and joint infections in patients

scientific article

An integrative, multi-omics approach towards the prioritization of Klebsiella pneumoniae drug targets.

scientific article published on 17 July 2018

Analysis of composition-based metagenomic classification

scientific article

Analysis of isolates from Bangladesh highlights multiple ways to carry resistance genes in Salmonella Typhi

scientific article published on 28 June 2019

Asexual propagation of a virulent clone complex in a human and feline outbreak of sporotrichosis.

scientific article

AtlasT4SS: a curated database for type IV secretion systems

scientific article

Automated smoother for the numerical decoupling of dynamics models

scientific article

BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies

scientific article

BioWorkbench: a high-performance framework for managing and analyzing bioinformatics experiments

scientific article published on 29 August 2018

Biochemical and phylogenetic analyses of phosphatidylinositol production in Angomonas deanei, an endosymbiont-harboring trypanosomatid

scientific article

Biogeographical distribution analysis of hydrocarbon degrading and biosurfactant producing genes suggests that near-equatorial biomes have higher abundance of genes with potential for bioremediation.

scientific article

Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses

scientific article

CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens

scientific article

Cestode strobilation: prediction of developmental genes and pathways

scientific article published on 16 July 2020

Characterisation of plasmid-mediated rmtB-1 in Enterobacteriaceae clinical isolates from São Paulo, Brazil

article

Characterization of BKC-1 class A carbapenemase from Klebsiella pneumoniae clinical isolates in Brazil.

scientific article

Chromosomal copy number variation reveals differential levels of genomic plasticity in distinct Trypanosoma cruzi strains

scientific article published on 4 July 2015

Closure of rRNA related gaps in the Chromobacterium violaceum genome with the PCR-assisted contig extension (PACE) protocol

scientific article published on 31 March 2004

Combination of measures distinguishes pre-miRNAs from other stem-loops in the genome of the newly sequenced Anopheles darlingi

scientific article

Combined genomic and structural analyses of a cultured magnetotactic bacterium reveals its niche adaptation to a dynamic environment

scientific article

Common ancestry of iron oxide- and iron-sulfide-based biomineralization in magnetotactic bacteria

scientific article

Community-acquired methicillin-resistant from ST1 lineage harboring a new SCC IV subtype (SCC IVm) containing the gene

scientific article published on 14 December 2018

Comparative Genomic Analysis of a Clinical Isolate of Klebsiella quasipneumoniae subsp. similipneumoniae, a KPC-2 and OKP-B-6 Beta-Lactamases Producer Harboring Two Drug-Resistance Plasmids from Southeast Brazil.

scientific article published on 16 February 2018

Comparative Studies of Transcriptional Regulation Mechanisms in a Group of Eight Gamma-proteobacterial Genomes

scientific article published on 04 October 2005

Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms

scientific article published on 22 January 2014

Comparative genome analysis of entomopathogenic fungi reveals a complex set of secreted proteins

scientific article

Comparative genomic analysis of magnetotactic bacteria from the Deltaproteobacteria provides new insights into magnetite and greigite magnetosome genes required for magnetotaxis

scientific article published on 23 April 2013

Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean

scientific article

Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis.

scientific article

Comparative metagenome of a stream impacted by the urbanization phenomenon.

scientific article

Comparative mitogenomic analyses of Amazona parrots and Psittaciformes

scientific article published on 01 July 2018

Complete Genome Sequence of Strain SS-5, a Magnetotactic Gammaproteobacterium Isolated from the Salton Sea, a Shallow, Saline, Endorheic Rift Lake Located on the San Andreas Fault in California

scientific article published on 07 January 2021

Complete Genome Sequence of a Variant of the Methicillin-Resistant Staphylococcus aureus ST239 Lineage, Strain BMB9393, Displaying Superior Ability To Accumulate ica-Independent Biofilm

scientific article published on 08 August 2013

Complete Genome Sequence of the MRSA Isolate HC1335 from ST239 Lineage Displaying a Truncated AgrC Histidine Kinase Receptor

scientific article published on 15 September 2016

Complete genome sequence of Burkholderia phenoliruptrix BR3459a (CLA1), a heat-tolerant, nitrogen-fixing symbiont of Mimosa flocculosa

scientific article

Complete genome sequence of an agr-dysfunctional variant of the ST239 lineage of the methicillin-resistant Staphylococcus aureus strain GV69 from Brazil

scientific article published on 4 May 2016

Conservation of key members in the course of the evolution of the insulin signaling pathway

scientific article published on 20 June 2008

Correlation between female sex, IL28B genotype, and the clinical severity of bronchiolitis in pediatric patients

scientific article published on 23 October 2019

Culture-independent characterization of novel psychrophilic magnetotactic cocci from Antarctic marine sediments

scientific article published on 31 May 2016

DASMiner: discovering and integrating data from DAS sources

scientific article

De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers

scientific article

Deciphering unusual uncultured magnetotactic multicellular prokaryotes through genomics

scientific article

Dense sampling of bird diversity increases power of comparative genomics

scientific article published on 11 November 2020

Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual

scientific article (publication date: August 2011)

Diversity in antifungal activity of strains of Chromobacterium violaceum from the Brazilian Amazon

scientific article

Draft Genome Sequence of Mycobacterium tuberculosis Clinical Strain G-12-005.

scientific article

Draft Genome Sequence of Tritrichomonas foetus Strain K

scientific article published on 20 April 2017

Draft Genome Sequence of the D-Xylose-Fermenting Yeast Spathaspora arborariae UFMG-HM19.1AT.

scientific article published on 16 January 2014

Draft Genome Sequence of the Fungus (Strain LaBioMMi 136), a Plant Endophyte from

article

Draft Genome Sequences of Six Actinobacillus pleuropneumoniae Serotype 8 Brazilian Clinical Isolates: Insight into New Applications

scientific article published on 5 March 2015

Draft genome sequence of Bizionia argentinensis, isolated from Antarctic surface water.

scientific article

Empirical assessment of sequencing errors for high throughput pyrosequencing data.

scientific article

Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers.

scientific article

Erratum to: Combined genomic and structural analyses of a cultured magnetotactic bacterium reveals its niche adaptation to a dynamic environment

scientific article published on 9 November 2016

Erratum to: Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction

scientific article published on 17 February 2017

Evolution and epidemic spread of SARS-CoV-2 in Brazil

preprint article published on 12 June 2020

Exploration of the core metabolism of symbiotic bacteria

scientific article

Exploratory Investigation of Bacteroides fragilis Transcriptional Response during In vitro Exposure to Subinhibitory Concentration of Metronidazole

scientific article published on 20 September 2016

Exploratory analysis of the copy number alterations in glioblastoma multiforme

scientific article

Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).

scientific article published on 27 January 2017

From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters

scientific article

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

scientific article published in 2022

Genes involved in cell division in mycoplasmas

article

Genetic Characterization of Plasmid-Borne bla OXA-58 in Distinct Acinetobacter Species

scientific article published on 16 October 2019

Genetic characterization of Chromobacterium isolates from black water environments in the Brazilian Amazon

scientific article published in January 2005

Genome Sequence of Bradyrhizobium tropiciagri Strain CNPSo 1112T, Isolated from a Root Nodule of Neonotonia wightii

scientific article

Genome Sequence of Bradyrhizobium viridifuturi Strain SEMIA 690T, a Nitrogen-Fixing Symbiont of Centrosema pubescens

scientific article published on 17 December 2015

Genome and plasmid context of two rmtG-carrying Enterobacter hormaechei isolated from urinary tract infections in Brazil

scientific article published on 03 July 2019

Genome of Rhizobium leucaenae strains CFN 299(T) and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions

scientific article

Genome of the avirulent human-infective trypanosome--Trypanosoma rangeli

scientific article published in September 2014

Genome-Wide Analysis of Secondary Metabolite Gene Clusters in Ophiostoma ulmi and Ophiostoma novo-ulmi Reveals a Fujikurin-Like Gene Cluster with a Putative Role in Infection

scientific article

Genome-wide DNA methylation analysis of Metarhizium anisopliae during tick mimicked infection condition

scientific article published on 11 November 2019

Genome-wide diversity and differentiation in New World populations of the human malaria parasite Plasmodium vivax.

scientific article

Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal

scientific article published in 2022

Genomic analyses and transcriptional profiles of the glycoside hydrolase family 18 genes of the entomopathogenic fungus Metarhizium anisopliae

scientific article

Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales

scientific article

Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).

scientific article

Genomic insights into the versatility of the plant growth-promoting bacterium Azospirillum amazonense

scientific article

Genomic panorama of Bradyrhizobium japonicum CPAC 15, a commercial inoculant strain largely established in Brazilian soils and belonging to the same serogroup as USDA 123

article

Genomic taxonomy of Vibrios

scientific article

Gut bacterial communities in the giant land snail Achatina fulica and their modification by sugarcane-based diet

scientific article

Heterologous induction of a predicted promoter sequence for paraquat-inducible genes of Chromobacterium violaceum in response to paraquat compound

article

High-quality draft genome sequence resources of eight Xylella fastidiosa strains isolated from citrus, coffee, plum and hibiscus in South America

scientific article published on 10 June 2020

ITGA6 gene silencing by RNA interference modulates the expression of a large number of cell migration-related genes in human thymic epithelial cells

scientific article

Identification of non-coding RNAs in environmental vibrios

scientific article

Identification of yebG as a DNA damage-inducible Escherichia coli gene

article

Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria.

scientific article

Impact of long-term cropping of glyphosate-resistant transgenic soybean [Glycine max (L.) Merr.] on soil microbiome

scientific article published on 12 February 2016

Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling

scientific article (publication date: 13 May 2016)

Intraclonal Genome Stability of the Metallo-β-lactamase SPM-1-producing Pseudomonas aeruginosa ST277, an Endemic Clone Disseminated in Brazilian Hospitals.

scientific article published on 05 December 2016

Isolation of Infective Zika Virus from Urine and Saliva of Patients in Brazil

scientific article

Isolation, cultivation and genomic analysis of magnetosome biomineralization genes of a new genus of South-seeking magnetotactic cocci within the Alphaproteobacteria

scientific article

Laminin database: a tool to retrieve high-throughput and curated data for studies on laminins

scientific article

Laminin-database v.2.0: an update on laminins in health and neuromuscular disorders

scientific article

Local Diversification of Methicillin- Resistant ST239 in South America After Its Rapid Worldwide Dissemination

scientific article published in 2019

MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies

scientific article

Metagenome enrichment approach used for selection of oil-degrading bacteria consortia for drill cutting residue bioremediation.

scientific article published on 16 January 2018

Metagenomic analysis of sediments under seaports influence in the Equatorial Atlantic Ocean

scientific article

Metagenomic analysis of the microbiota from the crop of an invasive snail reveals a rich reservoir of novel genes ⬇️

scientific article

Metagenomic analysis reveals microbial functional redundancies and specificities in a soil under different tillage and crop-management regimes

article

Microbiome overview in swine lungs

scientific article published on 18 July 2017

Mitochondrial respiration and genomic analysis provide insight into the influence of the symbiotic bacterium on host trypanosomatid oxygen consumption.

scientific article published on 27 August 2014

Molecular alterations in the extracellular matrix in the brains of newborns with congenital Zika syndrome

scientific article published on 09 June 2020

Monophyletic origin of magnetotaxis and the first magnetosomes.

scientific article published on 25 February 2013

Mycoplasma non-coding RNA: identification of small RNAs and targets

scientific article

New insights on the Golgi complex of Tritrichomonas foetus

scientific article

New insights on the biology of swine respiratory tract mycoplasmas from a comparative genome analysis

scientific article

Novel genes related to nodulation, secretion systems, and surface structures revealed by a genome draft of Rhizobium tropici strain PRF 81.

scientific article published on 29 January 2009

Origins of the Xylella fastidiosa prophage-like regions and their impact in genome differentiation

scientific article

Outstanding impact of soil tillage on the abundance of soil hydrolases revealed by a metagenomic approach.

scientific article published on 31 March 2018

Parameter optimization in S-system models

scientific article

Parrot Genomes and the Evolution of Heightened Longevity and Cognition

scientific article published on 06 December 2018

Peroxide sensing and signaling in the Sporothrix schenckii complex: an in silico analysis to uncover putative mechanisms regulating the Hog1 and AP-1 like signaling pathways

scientific article published on 30 December 2014

Phylodynamic analysis of SARS-CoV-2 spread in Rio de Janeiro, Brazil, highlights how metropolitan areas act as dispersal hubs for new variants

scientific article published in 2022

Ploidy Determination in the Pathogenic Fungus spp

scientific article published on 25 February 2019

Predicting the proteins of Angomonas deanei, Strigomonas culicis and their respective endosymbionts reveals new aspects of the trypanosomatidae family

scientific article published in 2013

Predicting transcriptional regulatory interactions with artificial neural networks applied to E. coli multidrug resistance efflux pumps

scientific article

Prediction of TF target sites based on atomistic models of protein-DNA complexes

scientific article

Pyrosequencing-based analysis reveals a novel capsular gene cluster in a KPC-producing Klebsiella pneumoniae clinical isolate identified in Brazil

scientific article

Reply to "Mobilization of blaBKC-1 by ISKpn23?".

scientific article published on 22 July 2016

Restriction-modification systems in Mycoplasma spp

Secondary metabolite gene clusters in the entomopathogen fungus Metarhizium anisopliae: genome identification and patterns of expression in a cuticle infection model

scientific article

Shifts in taxonomic and functional microbial diversity with agriculture: How fragile is the Brazilian Cerrado?

scientific article

Short interrupted palindromes on the extragenic DNA of Escherichia coli K-12, Haemophilus influenzae and Neisseria meningitidis

scientific article published in November 2000

Small interference ITGA6 gene targeting in the human thymic epithelium differentially regulates the expression of immunological synapse-related genes

scientific article published on 11 May 2017

Soil metagenomics reveals differences under conventional and no-tillage with crop rotation or succession

scientific article published in 2013

Strict network analysis of evolutionary conserved and brain-expressed genes reveals new putative candidates implicated in Intellectual Disability and in Global Development Delay

scientific article published on 11 September 2020

Structural analysis of a novel N-carbamoyl-d-amino acid amidohydrolase from a Brazilian Bradyrhizobium japonicum strain: In silico insights by molecular modelling, docking and molecular dynamics

Structural descriptor database: a new tool for sequence-based functional site prediction

scientific article

Structure-based functional inference of hypothetical proteins from Mycoplasma hyopneumoniae

scientific article published on 26 August 2011

Superoxide radical-generating compounds activate a predicted promoter site for paraquat-inducible genes of the Chromobacterium violaceum bacterium in a dose-dependent manner.

scientific article

Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae

scientific article

Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing

scientific article

TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes

scientific article

Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis

scientific article

Taxonomic and functional profiles of soil samples from Atlantic forest and Caatinga biomes in northeastern Brazil

scientific article

The Importance of Glycerophospholipid Production to the Mutualist Symbiosis of Trypanosomatids

scientific article published on 04 January 2022

The assembly and annotation of the complete Rufous-bellied thrush mitochondrial genome

scientific article published on 18 December 2015

The changing epidemiology of Acinetobacter spp. producing OXA carbapenemases causing bloodstream infections in Brazil: a BrasNet report.

scientific article published on 12 August 2015

The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes

scientific article

The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability

scientific article

The complete mitochondrial genome of Crassostrea gasar (Bivalvia: Ostreidae).

scientific article published on 27 February 2016

The costa of trichomonads: A complex macromolecular cytoskeleton structure made of uncommon proteins

scientific article published on 31 March 2017

The genome of Anopheles darlingi, the main neotropical malaria vector

scientific article published on 12 June 2013

The polymyxin B-induced transcriptomic response of a clinical, multidrug-resistant Klebsiella pneumoniae involves multiple regulatory elements and intracellular targets

scientific article

The transposable element-rich genome of the cereal pest Sitophilus oryzae

scientific article published on 09 November 2021

Tolerance to stress and environmental adaptability of Chromobacterium violaceum.

scientific article published on 31 March 2004

Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes

scientific article

Transcriptional and proteomic responses to carbon starvation in Paracoccidioides

scientific article

Trypanosoma cruzi Clone Dm28c Draft Genome Sequence

scientific article published on 30 January 2014

Unravelling the transcriptome profile of the Swine respiratory tract mycoplasmas

scientific article

Whole-exome sequencing reveals insights into genetic susceptibility to Congenital Zika Syndrome

scientific article

Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains

scientific article published on January 2012

Zika virus disrupts gene expression in human myoblasts and myotubes: Relationship with susceptibility to infection

scientific article published in 2022

Zika virus targets the human thymic epithelium

scientific article published on 28 January 2020

miRNA Genetic Variants Alter Their Secondary Structure and Expression in Patients With RASopathies Syndromes

scientific article published on 13 November 2019

Paulina is supported by:

About Paulina

Help