List of works - Daniel Weindl

AMICI: high-performance sensitivity analysis for large ordinary differential equation models

scientific article published in 2021

Benchmarking optimization methods for parameter estimation in large kinetic models.

scientific article published in March 2019

Bridging the gap between non-targeted stable isotope labeling and metabolic flux analysis

scientific article published on 23 April 2016

Community-driven roadmap for integrated disease maps.

scientific article published on 23 April 2018

Complexity of dopamine metabolism.

scientific article published on 17 May 2013

Efficient Parameter Estimation Enables the Prediction of Drug Response Using a Mechanistic Pan-Cancer Pathway Model

scientific article published on 28 November 2018

Efficient gradient-based parameter estimation for dynamic models using qualitative data

scientific article published in 2021

Efficient parameterization of large-scale dynamic models based on relative measurements

scientific article published on 01 January 2020

Fragment formula calculator (FFC): determination of chemical formulas for fragment ions in mass spectrometric data

scientific article

How metabolites modulate metabolic flux.

scientific article

Isotope cluster-based compound matching in gas chromatography/mass spectrometry for non-targeted metabolomics

scientific article published on 5 April 2013

Isotopologue ratio normalization for non-targeted metabolomics

scientific article published on 17 February 2015

Loss of DJ-1 impairs antioxidant response by altered glutamine and serine metabolism.

scientific article published on 30 January 2016

MIA: non-targeted mass isotopolome analysis

scientific article published on 06 June 2016

Metabolome-Wide Analysis of Stable Isotope Labeling-Is It Worth the Effort?

scientific article

Mini-batch optimization enables training of ODE models on large-scale datasets

scientific article published in 2022

NTFD--a stand-alone application for the non-targeted detection of stable isotope-labeled compounds in GC/MS data

scientific article

Non-targeted Tracer Fate Detection

scientific article published on 14 June 2015

PESTO: Parameter EStimation TOolbox

scientific article published on 23 October 2017

Simultaneous extraction of proteins and metabolites from cells in culture.

scientific article published on 18 July 2014

List of works by Daniel Weindl

AMICI: high-performance sensitivity analysis for large ordinary differential equation models

Benchmarking optimization methods for parameter estimation in large kinetic models.

Bridging the gap between non-targeted stable isotope labeling and metabolic flux analysis

Community-driven roadmap for integrated disease maps.

Complexity of dopamine metabolism.

Efficient Parameter Estimation Enables the Prediction of Drug Response Using a Mechanistic Pan-Cancer Pathway Model

Efficient gradient-based parameter estimation for dynamic models using qualitative data

Efficient parameterization of large-scale dynamic models based on relative measurements

Fragment formula calculator (FFC): determination of chemical formulas for fragment ions in mass spectrometric data

How metabolites modulate metabolic flux.

Isotope cluster-based compound matching in gas chromatography/mass spectrometry for non-targeted metabolomics

Isotopologue ratio normalization for non-targeted metabolomics

Loss of DJ-1 impairs antioxidant response by altered glutamine and serine metabolism.

MIA: non-targeted mass isotopolome analysis

Metabolome-Wide Analysis of Stable Isotope Labeling-Is It Worth the Effort?

Mini-batch optimization enables training of ODE models on large-scale datasets

NTFD--a stand-alone application for the non-targeted detection of stable isotope-labeled compounds in GC/MS data

Non-targeted Tracer Fate Detection

PESTO: Parameter EStimation TOolbox

Simultaneous extraction of proteins and metabolites from cells in culture.