List of works by José Luís Oliveira

A Cloud Architecture for Teleradiology-as-a-Service.

scientific article published on 04 March 2016

A Cytoscape-Based Web Tool for Representing Protein Networks

A De-Identification Pipeline for Ultrasound Medical Images in DICOM Format.

scientific article published on 13 April 2017

A Microarray Information Database

A Nanopublishing Architecture for Biomedical Data

article by Pedro Sernadela et al published 2014 in Advances in Intelligent Systems and Computing

A PACS archive architecture supported on cloud services.

scientific article

A RESTful image gateway for multiple medical image repositories

scientific article published on 18 November 2011

A centralized platform for geo-distributed PACS management

scientific article

A document processing pipeline for annotating chemical entities in scientific documents

scientific article

A machine learning methodology for medical imaging anonymization

scientific article published on August 2015

A modular framework for biomedical concept recognition

scientific article published on 24 September 2013

An Overview of Biomolecular Event Extraction from Scientific Documents

scientific article published on 26 October 2015

An integrative approach for codon repeats evolutionary analyses

scientific article published on January 2012

Analysing Relevant Diseases from Iberian Tweets

scientific article published in 2013

Ann2RDF

scientific article published in 2015

Automatic filtering and substantiation of drug safety signals

scientific article

BeCAS: biomedical concept recognition services and visualization

scientific article published on 4 June 2013

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

scientific article published in September 2016

Challenges Storing and Representing Biomedical Data

Challenges and Opportunities for Exploring Patient-Level Data

scientific article

Codon-triplet context unveils unique features of the Candida albicans protein coding genome

scientific article

Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction

scientific article

Computational methodology for predicting the landscape of the human-microbial interactome region level influence

scientific article published on 11 August 2015

Computational prediction of the human-microbial oral interactome

scientific article

Concept-based query expansion for retrieving gene related publications from MEDLINE.

scientific article

Conserved and highly expressed tRNA derived fragments in zebrafish.

scientific article published on 22 December 2015

Correction: Species-Specific Codon Context Rules Unveil Non-Neutrality Effects of Synonymous Mutations

scientific article

DICOM relay over the cloud.

scientific article published on 09 August 2012

Data Integration Solution for Organ-Specific Studies: An Application for Oral Biology

Design, development, exploitation and assessment of a Cardiology Web PACS.

scientific article published on 30 December 2008

Dicoogle - an open source peer-to-peer PACS

scientific article

Drug-induced acute myocardial infarction: identifying 'prime suspects' from electronic healthcare records-based surveillance system

scientific article (publication date: 2013)

Dynamic service integration using web-based workflows

DynamicFlow: A Client-Side Workflow Management System

Egas: a collaborative and interactive document curation platform

scientific article published on 11 June 2014

Endomyocardial Biopsy as Risk Factor in the Development of Tricuspid Insufficiency After Heart Transplantation

article

EuGene: maximizing synthetic gene design for heterologous expression.

scientific article published on 30 July 2012

Expanding Gene-Based PubMed Queries

scientific article published in 2010

Extracting Sentences Describing Biomolecular Events from the Biomedical Literature

scientific article published in 2014

From protein-protein interactions to rational drug design: are computational methods up to the challenge?

scientific article published on January 2013

From the salivary proteome to the OralOme: comprehensive molecular oral biology

scientific article published on 28 January 2012

Gathering and exploring scientific knowledge in pharmacovigilance

scientific article (publication date: 2013)

GeneBrowser 2: an application to explore and identify common biological traits in a set of genes

scientific article

General guidelines for biomedical software development.

scientific article

Gimli: open source and high-performance biomedical name recognition

scientific article published on 15 February 2013

Handling Noise in Protein Interaction Networks

scientific article published on 30 October 2019

Harmonization of gene/protein annotations: towards a gold standard MEDLINE.

scientific article published on 13 March 2012

Heart transplantation in arrhythmogenic right ventricular dysplasia: case reports

scientific article published in April 2009

Improving Cross Mapping in Biomedical Databases

scientific article published in 2010

Improving Literature Searches in Gene Expression Studies

article

Improving data and knowledge management to better integrate health care and research.

scientific article

Improving the accuracy of recombinant protein production through integration of bioinformatics, statistical and mass spectrometry methodologies.

scientific article published on 22 January 2015

Indexing and retrieving DICOM data in disperse and unstructured archives

scientific article

Integration of Genetic and Medical Information Through a Web Crawler System

Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure.

scientific article

Linked Registries: Connecting Rare Diseases Patient Registries through a Semantic Web Layer.

scientific article published on 29 October 2017

Long-Term Pulmonary Vascular Reactivity After Orthotopic Heart Transplantation by the Biatrial Versus the Bicaval Technique

scientific article published on 01 January 2011

Mining clinical attributes of genomic variants through assisted literature curation in Egas

scientific article published on 07 June 2016

Normalizing Heterogeneous Medical Imaging Data to Measure the Impact of Radiation Dose

scientific article

Open-Source Electronic Health Record Systems for Low-Resource Settings: Systematic Review.

scientific article published on 13 November 2017

OralCard: a bioinformatic tool for the study of oral proteome

scientific article

Parallel DNA pyrosequencing unveils new zebrafish microRNAs

scientific article

Passive Sensing of Health Outcomes Through Smartphones: Systematic Review of Current Solutions and Possible Limitations

scientific article published on 23 August 2019

Patient data discovery platforms as enablers of biomedical and translational research: A systematic review

scientific article published on 25 March 2019

Prioritizing Literature Search Results Using a Training Set of Classified Documents

scientific article published in 2011

Quantitative Characterization of Protein Networks of the Oral Cavity

RecRWR: a recursive random walk method for improved identification of diseases

scientific article

Recommendations for use of marginal donors in heart transplantation: Brazilian Association of Organs Transplantation guideline.

scientific article published in January 2011

Representation learning for mammography mass lesion classification with convolutional neural networks.

scientific article published on 7 January 2016

SCALEUS-FD: A FAIR Data Tool for Biomedical Applications

scientific article published on 26 August 2020

SCALEUS: Semantic Web Services Integration for Biomedical Applications

scientific article published on 18 February 2017

Sensor-based architecture for medical imaging workflow analysis

scientific article published on 24 June 2014

Species-specific codon context rules unveil non-neutrality effects of synonymous mutations

scientific article

Syntactic Parsing for Bio-molecular Event Detection from Scientific Literature

scientific article published in 2009

TASKA: A modular task management system to support health research studies

scientific article published on 02 July 2019

Telecardiology through ubiquitous internet services.

scientific article published on 17 June 2012

The EU-ADR Web Platform: delivering advanced pharmacovigilance tools

scientific article published on 4 December 2012

The landscape of protein biomarkers proposed for periodontal disease: markers with functional meaning

scientific article published on 26 June 2014

TrigNER: automatically optimized biomedical event trigger recognition on scientific documents.

scientific article published on 08 January 2014

Twitter: a good place to detect health conditions

scientific article

Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions

scientific article published in August 2015

WAVe: web analysis of the variome.

scientific article

Weighted Gene Co-expression Network Analysis Applied to Head and Neck Squamous Cell Carcinoma Data

article

XDS-I outsourcing proxy: ensuring confidentiality while preserving interoperability

scientific article published on July 2014

geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification

scientific article

mRNA secondary structure optimization using a correlated stem-loop prediction

scientific article published on 24 February 2016

mRNA secondary structure optimization using a correlated stem-loop prediction.

scientific article published on 15 January 2013

Paulina is supported by:

About Paulina

Help